AT1G31300

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001172
Physical Location & Seq
Forward (+)
11193625 .. 11196397
2773 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G31300.2

Sequence Viewer

Length: 837 bp
ATGTCGACGACGTCTTTGCAAACGATTGGTGCTATTAAGTCTTATCATCATCAAGCTCAGCATTTGGTTAAGAATTATCTCTTAGCTGATCCTTTTATTCCTTACACTTCTGTCCTCACCGGCATTTTCCTTTGCAAAGTGGTTTATGATCTTTGTCATTTTATCAGCAACTCACATTCTAAGACTTATATCATCCTCACGAAAATTCAAAGAATCGAATGGAATAACCGTGGTATCTCGACAGTTCATGCTATTTTTATTTCGGCTATGTCGCTGTACTTTGTGTTCTGGTCCGACCTCTTTTCCGATAGGTGGCATAATGATCTTGTTGTTTTCCGGAGCTCACGACTTTCTTCTCTTGGTTTAGGGATATCTATTGGTTACTTCCTTGCTGATCTTGGGATGATCTTCTGGAAATATCCTTCTTTGGGTGGAATTGAGTATATTGTGCATCACTCGCTATCGGGGGTTGCAGTTGCCTACTCTTTATTTTCCGGGGAAGGACAGTTATATACCTACATGGTCCTCATCTCCGAGATTACAACCCCAGAGATCAACTTGAGATGGTACCTGGACACGGCTGGTATGAAAAAATCATTGGCATACGTTGTTAATGGCGTTTTCATCTTCTTGGCTTGGCTGGTTGCTAGAATTCTACTGTTCATATACATGTTTTATCATGTTTATCTCCACTACAACCAGGTCATGAGGATGCACATCTTTGGTTACGTTCTGGTATTCGGCGTACCAGCTGCGCTCGGTGTCATGAACTTGATATGGTTCGGGAAGATTGTGAGAGGGGTAAAGAAAACATTAGCAAAGAGATGTGAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

278

Amino Acids

31.88

Weight (kDa)

9.31

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 73 - 266 6.9e-32 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
Acc65I GGTACC 1 cut(s) 567
AccB1I GGYRCC 1 cut(s) 567
AccI GTMKAC 1 cut(s) 5
AccIII TCCGGA 1 cut(s) 336
AclWI GGATC 1 cut(s) 83
AcsI RAATTY 2 cut(s) 204, 651
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 3 cut(s) 278, 569, 747
AfiI CCNNNNNNNGG 3 cut(s) 312, 428, 577
AflIII ACRYGT 1 cut(s) 669
AgsI TTSAA 1 cut(s) 209
AjnI CCWGG 2 cut(s) 570, 699
AjuI GAANNNNNNNTTGG 2 cut(s) 581, 613
AluBI AGCT 4 cut(s) 56, 86, 342, 752
AluI AGCT 4 cut(s) 56, 86, 342, 752
Alw21I GWGCWC 1 cut(s) 344
AlwI GGATC 1 cut(s) 83
Aor13HI TCCGGA 1 cut(s) 336
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 2 cut(s) 204, 651
ArsI GACNNNNNNTTYG 1 cut(s) 30
Asp718I GGTACC 1 cut(s) 567
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 2 cut(s) 291, 523
AsuC2I CCSGG 1 cut(s) 496
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 2 cut(s) 291, 523
BaeI ACNNNNGTAYC 2 cut(s) 217, 250
BanI GGYRCC 1 cut(s) 567
BanII GRGCYC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 739
BccI CCATC 1 cut(s) 558
BceAI ACGGC 1 cut(s) 594
BcgI CGANNNNNNTGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 572, 701
BcnI CCSGG 1 cut(s) 496
BfaI CTAG 1 cut(s) 648
BisI GCNGC 1 cut(s) 753
BlpI GCTNAGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 754
Bme1390I CCNGG 3 cut(s) 496, 572, 701
Bme18I GGWCC 2 cut(s) 291, 523
BmgT120I GGNCC 2 cut(s) 291, 523
BmiI GGNNCC 1 cut(s) 569
BmrFI CCNGG 3 cut(s) 496, 572, 701
BmsI GCATC 2 cut(s) 460, 702
Bpu1102I GCTNAGC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 580
BpuMI CCSGG 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 716
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 2 cut(s) 229, 495
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 3 cut(s) 312, 428, 577
Bse118I RCCGGY 1 cut(s) 119
Bse8I GATNNNNATC 1 cut(s) 716
BseAI TCCGGA 1 cut(s) 336
BseBI CCWGG 2 cut(s) 572, 701
BseDI CCNNGG 2 cut(s) 229, 495
BseGI GGATG 3 cut(s) 192, 408, 717
BseJI GATNNNNATC 1 cut(s) 716
BseLI CCNNNNNNNGG 3 cut(s) 312, 428, 577
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 739
BshNI GGYRCC 1 cut(s) 567
BsiHKAI GWGCWC 1 cut(s) 344
BsiSI CCGG 3 cut(s) 120, 337, 495
BslI CCNNNNNNNGG 3 cut(s) 312, 428, 577
Bsp1286I GDGCHC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 336
Bsp143I GATC 6 cut(s) 88, 148, 322, 394, 405, 552
Bsp1720I GCTNAGC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 70
BspEI TCCGGA 1 cut(s) 336
BspHI TCATGA 2 cut(s) 705, 765
BspLI GGNNCC 1 cut(s) 569
BspPI GGATC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 2 cut(s) 229, 495
BssMI GATC 6 cut(s) 88, 148, 322, 394, 405, 552
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 2 cut(s) 572, 701
Bst4CI ACNGT 4 cut(s) 230, 244, 507, 660
BstACI GRCGYC 1 cut(s) 11
BstDEI CTNAG 3 cut(s) 57, 82, 180
BstDSI CCRYGG 1 cut(s) 229
BstF5I GGATG 3 cut(s) 192, 408, 717
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 6 cut(s) 91, 151, 325, 397, 408, 555
BstMBI GATC 6 cut(s) 88, 148, 322, 394, 405, 552
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNI CCWGG 2 cut(s) 572, 701
BstNSI RCATGY 1 cut(s) 673
BstSCI CCNGG 3 cut(s) 494, 570, 699
BstV1I GCAGC 1 cut(s) 739
BtgI CCRYGG 1 cut(s) 229
BtsCI GGATG 3 cut(s) 192, 408, 717
CciI TCATGA 2 cut(s) 705, 765
CfoI GCGC 1 cut(s) 757
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 291, 523
CsiI ACCWGGT 1 cut(s) 699
Csp6I GTAC 3 cut(s) 277, 568, 746
CviAII CATG 6 cut(s) 248, 520, 670, 680, 706, 766
CviJI RGCY 8 cut(s) 56, 86, 266, 342, 581, 635, 640, 752
CviKI_1 RGCY 8 cut(s) 56, 86, 266, 342, 581, 635, 640, 752
CviQI GTAC 3 cut(s) 277, 568, 746
DdeI CTNAG 3 cut(s) 57, 82, 180
DpnI GATC 6 cut(s) 90, 150, 324, 396, 407, 554
DpnII GATC 6 cut(s) 88, 148, 322, 394, 405, 552
Ecl136II GAGCTC 1 cut(s) 342
Eco24I GRGCYC 1 cut(s) 344
Eco32I GATATC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 291, 523
Eco53kI GAGCTC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 342
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 2 cut(s) 570, 699
EcoRV GATATC 1 cut(s) 372
EcoT38I GRGCYC 1 cut(s) 344
FaeI CATG 6 cut(s) 251, 523, 673, 683, 709, 769
FatI CATG 6 cut(s) 247, 519, 669, 679, 705, 765
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 3 cut(s) 179, 415, 724
FriOI GRGCYC 1 cut(s) 344
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 1 cut(s) 648
GlaI GCGC 1 cut(s) 756
GluI GCNGC 1 cut(s) 753
HapII CCGG 3 cut(s) 120, 337, 495
HhaI GCGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 6 cut(s) 251, 523, 673, 683, 709, 769
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 1 cut(s) 213
HpaII CCGG 3 cut(s) 120, 337, 495
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 295, 307, 535
Hpy188III TCNNGA 8 cut(s) 199, 238, 337, 345, 412, 706, 766, 784
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 2 cut(s) 432, 494
HpyCH4III ACNGT 4 cut(s) 230, 244, 507, 660
HpyCH4IV ACGT 3 cut(s) 11, 606, 729
HpyCH4V TGCA 5 cut(s) 19, 135, 451, 473, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 3 cut(s) 57, 82, 180
HpySE526I ACGT 3 cut(s) 11, 606, 729
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 6 cut(s) 251, 523, 673, 683, 709, 769
HspAI GCGC 1 cut(s) 755
Kpn2I TCCGGA 1 cut(s) 336
KpnI GGTACC 1 cut(s) 571
Kzo9I GATC 6 cut(s) 88, 148, 322, 394, 405, 552
LmnI GCTCC 1 cut(s) 339
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 2 cut(s) 460, 702
MabI ACCWGGT 1 cut(s) 699
MaeI CTAG 1 cut(s) 648
MaeII ACGT 3 cut(s) 11, 606, 729
MaeIII GTNAC 2 cut(s) 380, 725
MalI GATC 6 cut(s) 90, 150, 324, 396, 407, 554
MboI GATC 6 cut(s) 88, 148, 322, 394, 405, 552
MboII GAAGA 4 cut(s) 345, 400, 619, 799
MhlI GDGCHC 1 cut(s) 344
MluCI AATT 4 cut(s) 73, 204, 435, 651
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 6 cut(s) 125, 206, 308, 536, 702, 791
MroI TCCGGA 1 cut(s) 336
MseI TTAA 3 cut(s) 36, 69, 612
MslI CAYNNNNRTG 2 cut(s) 668, 710
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 3 cut(s) 120, 337, 495
MspR9I CCNGG 3 cut(s) 496, 572, 701
MvaI CCWGG 2 cut(s) 572, 701
MwoI GCNNNNNNNGC 1 cut(s) 457
NciI CCSGG 1 cut(s) 496
NdeII GATC 6 cut(s) 88, 148, 322, 394, 405, 552
NlaIII CATG 6 cut(s) 251, 523, 673, 683, 709, 769
NlaIV GGNNCC 1 cut(s) 569
NspI RCATGY 1 cut(s) 673
PagI TCATGA 2 cut(s) 705, 765
PciI ACATGT 1 cut(s) 669
PfeI GAWTC 1 cut(s) 213
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 754
PscI ACATGT 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 344
Psp6I CCWGG 2 cut(s) 570, 699
PspGI CCWGG 2 cut(s) 570, 699
PspN4I GGNNCC 1 cut(s) 569
PspPI GGNCC 2 cut(s) 291, 523
PsrI GAACNNNNNNTAC 2 cut(s) 269, 301
PsyI GACNNNGTC 1 cut(s) 10
PvuII CAGCTG 1 cut(s) 752
RsaI GTAC 3 cut(s) 278, 569, 747
RsaNI GTAC 3 cut(s) 277, 568, 746
RseI CAYNNNNRTG 2 cut(s) 668, 710
SacI GAGCTC 1 cut(s) 344
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 3 cut(s) 36, 69, 612
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 6 cut(s) 88, 148, 322, 394, 405, 552
Sau96I GGNCC 2 cut(s) 291, 523
ScrFI CCNGG 3 cut(s) 496, 572, 701
SduI GDGCHC 1 cut(s) 344
SexAI ACCWGGT 1 cut(s) 699
SfaNI GCATC 2 cut(s) 460, 702
SinI GGWCC 2 cut(s) 291, 523
SmiMI CAYNNNNRTG 2 cut(s) 668, 710
SmlI CTYRAG 1 cut(s) 559
SmoI CTYRAG 1 cut(s) 559
Sse9I AATT 4 cut(s) 73, 204, 435, 651
SspMI CTAG 1 cut(s) 648
SstI GAGCTC 1 cut(s) 344
StyD4I CCNGG 3 cut(s) 494, 570, 699
TaaI ACNGT 4 cut(s) 230, 244, 507, 660
TaiI ACGT 3 cut(s) 14, 609, 732
TaqI TCGA 3 cut(s) 5, 216, 239
TasI AATT 4 cut(s) 73, 204, 435, 651
TatI WGTACW 1 cut(s) 276
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 3 cut(s) 36, 69, 612
Tru9I TTAA 3 cut(s) 36, 69, 612
TseI GCWGC 1 cut(s) 752
TspDTI ATGAA 5 cut(s) 236, 602, 613, 652, 782
Tth111I GACNNNGTC 1 cut(s) 10
VpaK11BI GGWCC 2 cut(s) 291, 523
XapI RAATTY 2 cut(s) 204, 651
XceI RCATGY 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 648
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.