Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Reverse (-)

66955535 .. 66957104

Gene Structure 1570 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020631

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTCATTGTACTTGGTGTTTTGGTCGAATCTCTATTCCGACTATTCTGACAACCAACTCAAGCCATTTGTTACTTTGCAGAGCTCCCCATTGTCTACATTTGTATTGGGGGTTTCAGTTGGGTACTTCCTATCTGACCTTGGCATGATCTTTTGGTTTTACCCTGCTCTAGGTGGATTGGAATATGTGATTCATCATCTTCTTTCTCTAGCATCTGTAGCATATGCAATGTTGACTGGGGAAGGACAACTGTATACCTACATGGTTCTTATCTCCGAGACAACCACCCCCGGTATCAATTTGAGATGGTATCTTGACACTGCTGGAATGAAGAGGACTAAAACTTATATGATAAACGGGGTTGTAATCTTCATTGCTTGGCTGGTTGCCAGAATCCTTCTGTTCATGTTTCTGTTCTACCATCTCTACCTGCATTATGAACAGGTAAAACAAATGCACGCCGTTGGACAATTTTTAGCTTTCGGGGTGCCACCGATACTAGCTGTCATGAATTTGATATGGTTTGGGAAGATTTTGAAGGGATTGAAGAAGACATTAGCAAAGAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

191

Amino Acids

21.8

Weight (kDa)

9.32

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	2 - 180	3.8e-28	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	438
AccB1I	GGYRCC	1 cut(s)	487
AccI	GTMKAC	2 cut(s)	95, 254
AcsI	RAATTY	1 cut(s)	511
AfaI	GTAC	2 cut(s)	11, 125
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	2 cut(s)	538, 547
AluBI	AGCT	3 cut(s)	84, 479, 503
AluI	AGCT	3 cut(s)	84, 479, 503
Alw21I	GWGCWC	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	557
Bbv12I	GWGCWC	1 cut(s)	86
BccI	CCATC	2 cut(s)	300, 429
BceAI	ACGGC	1 cut(s)	446
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	3 cut(s)	170, 209, 500
BfmI	CTRYAG	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	438
Bme1390I	CCNGG	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	489
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	246
BpiI	GAAGAC	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	139, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	2 cut(s)	234, 372
BseDI	CCNNGG	2 cut(s)	139, 289
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMI	GCAATG	2 cut(s)	234, 372
BseNI	ACTGG	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	487
BsiHKAI	GWGCWC	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	147
BspHI	TCATGA	1 cut(s)	507
BspLI	GGNNCC	1 cut(s)	489
BspMI	ACCTGC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	487
BsrDI	GCAATG	2 cut(s)	234, 372
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	139, 289
BssMI	GATC	1 cut(s)	147
BssNAI	GTATAC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	139
Bst1107I	GTATAC	1 cut(s)	255
Bst4CI	ACNGT	1 cut(s)	252
Bst6I	CTCTTC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	459
BstENI	CCTNNNNNAGG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	557
BstZ17I	GTATAC	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	318
BtsIMutI	CAGTG	1 cut(s)	318
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	1 cut(s)	507
Csp6I	GTAC	2 cut(s)	10, 124
CviAII	CATG	4 cut(s)	145, 262, 406, 508
CviJI	RGCY	5 cut(s)	64, 84, 382, 479, 503
CviKI_1	RGCY	5 cut(s)	64, 84, 382, 479, 503
CviQI	GTAC	2 cut(s)	10, 124
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Ecl136II	GAGCTC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	84
EcoICRI	GAGCTC	1 cut(s)	84
EcoNI	CCTNNNNNAGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	86
ErhI	CCWWGG	1 cut(s)	139
FaeI	CATG	4 cut(s)	148, 265, 409, 511
FatI	CATG	4 cut(s)	144, 261, 405, 507
FauNDI	CATATG	1 cut(s)	223
FblI	GTMKAC	2 cut(s)	95, 254
FriOI	GRGCYC	1 cut(s)	86
FspBI	CTAG	3 cut(s)	170, 209, 500
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	4 cut(s)	148, 265, 409, 511
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	3 cut(s)	28, 190, 393
HpaII	CCGG	1 cut(s)	291
Hpy166II	GTNNAC	3 cut(s)	96, 234, 255
Hpy188I	TCNGA	4 cut(s)	40, 49, 136, 277
Hpy188III	TCNNGA	2 cut(s)	314, 508
Hpy8I	GTNNAC	3 cut(s)	96, 234, 255
HpyAV	CCTTC	3 cut(s)	236, 407, 532
HpyCH4III	ACNGT	1 cut(s)	252
HpyCH4V	TGCA	4 cut(s)	79, 227, 433, 457
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	4 cut(s)	148, 265, 409, 511
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	8 cut(s)	177, 222, 304, 309, 368, 403, 428, 443
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	3 cut(s)	170, 209, 500
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	6 cut(s)	191, 343, 361, 541, 559, 562
MhlI	GDGCHC	1 cut(s)	86
MluCI	AATT	3 cut(s)	298, 470, 511
MmeI	TCCRAC	2 cut(s)	63, 445
MnlI	CCTC	2 cut(s)	327, 558
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	1 cut(s)	218
NciI	CCSGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	4 cut(s)	148, 265, 409, 511
NlaIV	GGNNCC	1 cut(s)	489
PagI	TCATGA	1 cut(s)	507
PfeI	GAWTC	3 cut(s)	28, 190, 393
Psp124BI	GAGCTC	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	489
RsaI	GTAC	2 cut(s)	11, 125
RsaNI	GTAC	2 cut(s)	10, 124
SacI	GAGCTC	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	86
SetI	ASST	8 cut(s)	86, 141, 175, 260, 432, 447, 481, 505
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	3 cut(s)	298, 470, 511
SspMI	CTAG	3 cut(s)	170, 209, 500
SstI	GAGCTC	1 cut(s)	86
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	139
TaaI	ACNGT	1 cut(s)	252
TaqI	TCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	298, 470, 511
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	3 cut(s)	28, 190, 393
TscAI	CASTG	1 cut(s)	325
TspDTI	ATGAA	6 cut(s)	182, 344, 361, 394, 453, 524
TspRI	CASTG	1 cut(s)	325
XagI	CCTNNNNNAGG	1 cut(s)	168
XapI	RAATTY	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	95, 254
XspI	CTAG	3 cut(s)	170, 209, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.