Rorug02G0432800

Transmembrane protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000570
Physical Location & Seq
Forward (+)
55412208 .. 55417374
5167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0432800.1

Sequence Viewer

Length: 651 bp
ATGTCTTTGGAGACGTGTGTTTATCGTAGCAGAGTGTTTCATTTACGTTCACCCTTCCAGCTGCTAGGGGAGGACGAGCTTTTAATTAGATTAAAGCTCTTCAGGATGAAAGCAAGCCGCCGTCAGAGGACTGATCCATTTACTGTTGAAAGTAGAGCTCTAGCAGCTGTAACAGAATTTTGGGTCAATTTCTCTAGTATTAAGCAATCCAATAATAGGAGTGAGTACACACAGATGATAGCTGGGTCTCTTTCACGCATGGGTGTCCCGGAAGCTGAACATCCAACTATCATTGAAAACATATACCTGGTCCTTGACGTGGCTGTCTCCCCCGAGCTGCCTGTCATTGTGGCCGTTTGGGACATGACTTGCATCAGGTGTAGTCCCGATCTGGTTCCTGCAGTACCAAATATTGTTGTTCCTGCAACTAGCTCATCAATTGAGGAGGGTTTGGAGGAAGCAGAGGCTATAGTTGCAGAGACTCCATCATGTGTTATTTGCACCGAGGATCTTCCACTAGGCGATGAACAACTGATTAATCGTTTGCCCTGCAAACACCATTTTCATGTGCATTGCATTCTCCGGTGGCTGGAGATCAGTGGCGTATGTCCACTCTGCCGATCCGAATGCGGCCAGCAACCATATCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

216

Amino Acids

24.31

Weight (kDa)

5.28

Isoelectric Point (pI)

77.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 163 - 207 2.2e-13 Ring finger domain
zf-RING_11 PF17123 164 - 193 5.1e-06 RING-like zinc finger
zf-C3HC4_2 PF13923 164 - 206 5.8e-06 Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11 PF12861 174 - 209 8.5e-07 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1 PF12678 181 - 207 2.2e-08 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45110 AT5G45110
fragaria_vesca FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa Rorug02G0432800 Rorug05G0051600
rosa_samantha Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AciI CCGC 2 cut(s) 118, 630
AclWI GGATC 3 cut(s) 128, 516, 615
AcoI YGGCCR 2 cut(s) 351, 631
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 85
AfaI GTAC 2 cut(s) 227, 405
AfiI CCNNNNNNNGG 3 cut(s) 216, 319, 589
AflIII ACRYGT 1 cut(s) 14
AgsI TTSAA 2 cut(s) 149, 296
AjiI CACGTC 2 cut(s) 15, 319
AjnI CCWGG 1 cut(s) 306
AluBI AGCT 9 cut(s) 61, 79, 97, 158, 167, 242, 275, 337, 432
AluI AGCT 9 cut(s) 61, 79, 97, 158, 167, 242, 275, 337, 432
Alw21I GWGCWC 1 cut(s) 160
Alw26I GTCTC 4 cut(s) 5, 252, 331, 473
AlwI GGATC 3 cut(s) 128, 516, 615
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 2 cut(s) 351, 631
ApeKI GCWGC 3 cut(s) 61, 164, 337
ApoI RAATTY 1 cut(s) 176
AseI ATTAAT 1 cut(s) 537
AspS9I GGNCC 1 cut(s) 310
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 332
AvaII GGWCC 1 cut(s) 310
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 3 cut(s) 48, 176, 324
BccI CCATC 1 cut(s) 493
BceAI ACGGC 2 cut(s) 105, 338
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BciT130I CCWGG 1 cut(s) 308
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 4 cut(s) 5, 252, 331, 473
BfaI CTAG 5 cut(s) 65, 161, 195, 429, 518
BfmI CTRYAG 2 cut(s) 399, 468
BisI GCNGC 5 cut(s) 62, 118, 165, 338, 631
BlsI GCNGC 5 cut(s) 63, 119, 166, 339, 632
Bme1390I CCNGG 2 cut(s) 269, 308
Bme18I GGWCC 1 cut(s) 310
BmeT110I CYCGRG 1 cut(s) 332
BmgBI CACGTC 2 cut(s) 15, 319
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 396
BmrFI CCNGG 2 cut(s) 269, 308
BmsI GCATC 1 cut(s) 381
BpmI CTGGAG 1 cut(s) 611
BpuMI CCSGG 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 504
BsaWI WCCGGW 1 cut(s) 582
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 319, 589
Bse3DI GCAATG 1 cut(s) 571
BseBI CCWGG 1 cut(s) 308
BseDI CCNNGG 1 cut(s) 504
BseGI GGATG 2 cut(s) 111, 280
BseLI CCNNNNNNNGG 3 cut(s) 216, 319, 589
BseMI GCAATG 1 cut(s) 571
BseRI GAGGAG 1 cut(s) 458
BseXI GCAGC 3 cut(s) 48, 176, 324
BseYI CCCAGC 1 cut(s) 242
BshFI GGCC 2 cut(s) 353, 633
BsiHKAI GWGCWC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 2 cut(s) 269, 583
BslFI GGGAC 3 cut(s) 251, 369, 374
BslI CCNNNNNNNGG 3 cut(s) 216, 319, 589
BsmAI GTCTC 4 cut(s) 5, 252, 331, 473
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 3 cut(s) 251, 369, 374
BsmI GAATGC 2 cut(s) 576, 632
BsnI GGCC 2 cut(s) 353, 633
Bso31I GGTCTC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 5 cut(s) 133, 388, 508, 594, 620
BspACI CCGC 2 cut(s) 118, 630
BspANI GGCC 2 cut(s) 353, 633
BspLI GGNNCC 1 cut(s) 396
BspMAI CTGCAG 1 cut(s) 403
BspPI GGATC 3 cut(s) 128, 516, 615
BspQI GCTCTTC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 252
BsrDI GCAATG 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 504
BssMI GATC 5 cut(s) 133, 388, 508, 594, 620
Bst2UI CCWGG 1 cut(s) 308
Bst4CI ACNGT 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 115, 635
BstF5I GGATG 2 cut(s) 111, 280
BstKTI GATC 5 cut(s) 136, 391, 511, 597, 623
BstMAI GTCTC 4 cut(s) 5, 252, 331, 473
BstMBI GATC 5 cut(s) 133, 388, 508, 594, 620
BstMWI GCNNNNNNNGC 2 cut(s) 164, 473
BstNI CCWGG 1 cut(s) 308
BstSCI CCNGG 2 cut(s) 267, 306
BstSFI CTRYAG 2 cut(s) 399, 468
BstV1I GCAGC 3 cut(s) 48, 176, 324
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 2 cut(s) 353, 633
BtgZI GCGATG 1 cut(s) 537
BtrI CACGTC 2 cut(s) 15, 319
BtsCI GGATG 2 cut(s) 111, 280
BtsIMutI CAGTG 1 cut(s) 604
Cac8I GCNNGC 2 cut(s) 115, 635
Cfr13I GGNCC 1 cut(s) 310
CsiI ACCWGGT 1 cut(s) 306
Csp6I GTAC 2 cut(s) 226, 404
CviAII CATG 4 cut(s) 259, 364, 489, 566
CviQI GTAC 2 cut(s) 226, 404
DpnI GATC 5 cut(s) 135, 390, 510, 596, 622
DpnII GATC 5 cut(s) 133, 388, 508, 594, 620
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 2 cut(s) 351, 631
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 158
Eco24I GRGCYC 1 cut(s) 160
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 310
Eco53kI GAGCTC 1 cut(s) 158
Eco57I CTGAAG 1 cut(s) 85
Eco88I CYCGRG 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 160
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 4 cut(s) 262, 367, 492, 569
FaiI YATR 9 cut(s) 260, 302, 304, 365, 470, 490, 567, 607, 643
FaqI GGGAC 3 cut(s) 251, 369, 374
FatI CATG 4 cut(s) 258, 363, 488, 565
Fnu4HI GCNGC 5 cut(s) 62, 118, 165, 338, 631
FokI GGATG 2 cut(s) 118, 267
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 5 cut(s) 62, 118, 165, 338, 631
FspBI CTAG 5 cut(s) 65, 161, 195, 429, 518
GluI GCNGC 5 cut(s) 62, 118, 165, 338, 631
GsaI CCCAGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 611
HaeIII GGCC 2 cut(s) 353, 633
HapII CCGG 2 cut(s) 269, 583
Hin1II CATG 4 cut(s) 262, 367, 492, 569
HinfI GANTC 1 cut(s) 481
HpaII CCGG 2 cut(s) 269, 583
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 3 cut(s) 50, 228, 611
Hpy188I TCNGA 2 cut(s) 126, 625
Hpy188III TCNNGA 2 cut(s) 103, 386
Hpy8I GTNNAC 3 cut(s) 50, 228, 611
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 3 cut(s) 14, 46, 318
HpyCH4V TGCA 8 cut(s) 372, 401, 425, 476, 501, 552, 571, 576
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 473
HpySE526I ACGT 3 cut(s) 14, 46, 318
Hsp92II CATG 4 cut(s) 262, 367, 492, 569
Kzo9I GATC 5 cut(s) 133, 388, 508, 594, 620
LguI GCTCTTC 1 cut(s) 104
Lsp1109I GCAGC 3 cut(s) 48, 176, 324
LweI GCATC 1 cut(s) 381
MabI ACCWGGT 1 cut(s) 306
MaeI CTAG 5 cut(s) 65, 161, 195, 429, 518
MaeII ACGT 3 cut(s) 14, 46, 318
MaeIII GTNAC 1 cut(s) 169
MalI GATC 5 cut(s) 135, 390, 510, 596, 622
MboI GATC 5 cut(s) 133, 388, 508, 594, 620
MboII GAAGA 2 cut(s) 91, 503
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 1 cut(s) 508
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 4 cut(s) 84, 176, 187, 438
MlyI GAGTC 1 cut(s) 475
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 7 cut(s) 64, 120, 436, 439, 448, 457, 499
MseI TTAA 5 cut(s) 83, 92, 201, 537, 649
MslI CAYNNNNRTG 2 cut(s) 233, 564
MspA1I CMGCKG 2 cut(s) 61, 167
MspI CCGG 2 cut(s) 269, 583
MspR9I CCNGG 2 cut(s) 269, 308
MunI CAATTG 1 cut(s) 438
Mva1269I GAATGC 2 cut(s) 576, 632
MvaI CCWGG 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 164, 473
NciI CCSGG 1 cut(s) 269
NdeII GATC 5 cut(s) 133, 388, 508, 594, 620
NlaIII CATG 4 cut(s) 262, 367, 492, 569
NlaIV GGNNCC 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 2 cut(s) 576, 632
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 5 cut(s) 63, 119, 166, 339, 632
PleI GAGTC 1 cut(s) 475
PpsI GAGTC 1 cut(s) 475
PshBI ATTAAT 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 160
Psp6I CCWGG 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 310
PstI CTGCAG 1 cut(s) 403
PsuI RGATCY 1 cut(s) 508
PvuII CAGCTG 2 cut(s) 61, 167
RsaI GTAC 2 cut(s) 227, 405
RsaNI GTAC 2 cut(s) 226, 404
RseI CAYNNNNRTG 2 cut(s) 233, 564
SacI GAGCTC 1 cut(s) 160
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 5 cut(s) 83, 92, 201, 537, 649
SatI GCNGC 5 cut(s) 62, 118, 165, 338, 631
Sau3AI GATC 5 cut(s) 133, 388, 508, 594, 620
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 1 cut(s) 475
ScrFI CCNGG 2 cut(s) 269, 308
SduI GDGCHC 1 cut(s) 160
SexAI ACCWGGT 1 cut(s) 306
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 2 cut(s) 399, 468
SinI GGWCC 1 cut(s) 310
SmiMI CAYNNNNRTG 2 cut(s) 233, 564
Sse9I AATT 4 cut(s) 84, 176, 187, 438
SsiI CCGC 2 cut(s) 118, 630
SspI AATATT 1 cut(s) 412
SspMI CTAG 5 cut(s) 65, 161, 195, 429, 518
SstI GAGCTC 1 cut(s) 160
StyD4I CCNGG 2 cut(s) 267, 306
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 3 cut(s) 17, 49, 321
TasI AATT 4 cut(s) 84, 176, 187, 438
TatI WGTACW 1 cut(s) 225
TauI GCSGC 2 cut(s) 120, 633
Tru1I TTAA 5 cut(s) 83, 92, 201, 537, 649
Tru9I TTAA 5 cut(s) 83, 92, 201, 537, 649
TscAI CASTG 1 cut(s) 604
TseI GCWGC 3 cut(s) 61, 164, 337
TspDTI ATGAA 4 cut(s) 29, 122, 540, 554
TspRI CASTG 1 cut(s) 604
VpaK11BI GGWCC 1 cut(s) 310
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 1 cut(s) 176
XspI CTAG 5 cut(s) 65, 161, 195, 429, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.