Rh5AG142400

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000570
Physical Location & Seq
Reverse (-)
14866040 .. 14871250
5211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG142400.1

Sequence Viewer

Length: 1317 bp
ATGGCCAATTCAGCTGAGCCATCATCTTCTTTGAGCTTCACTTCACCTTCCCATATATCAAATGGTTCAATCAGCCACAACTTATCTTCCTTTGAAGCCCTGCCTAGTCTTGAAGTCATCAGTTTGACCAAGCTTAGCCTTAGTTTGGACCAGCTCTTGGGTGATTCTGGCTGTGATTATTGTGATGCTGAAATCATAGTTGAGGGAGAATCTGTTGGTGTTCACCGATGTATATTAGCTTCTAGGAGTAAGTTTTTTTGCAAACTATTCAAGCGAGAAAAGGGGTCTTCTGAGAAGGAGGGCAAACCGAGCAAACCAAAGTATAGTATGAAGGATTTGCTACCTTATGGTGACATTGGATATGAAGCATTTTCGGTTTTCTTGAGCTACGTGTATACTGGAAAGCTGAAGCCTTCTCCCGTGGAGGTGTCAACTTGCGTGCACAATGTATGCGCCCATGACTCATGTAGACCTGCAATCAATTTTGCTGTGGAATTGATGTATGCCTCTTCCATTTTCCAAATGCCAGATCTGGTTTCAATATTCGAGCGACGCCTTCTTAATTTTGTTGGGAAAGCTCTGGCAGAAGATGTTATCCCAATCCTTTTGGCTGCTTTCCACTGTCAGTTGAGCGAGCTTCTCACTCATTCTATAGAGAGAGTGGCACGATCAGATCTTGATAGCATCTGTATTGACAAGGAACTTCCGTATGAGGTTGTAGAGAAAGTTAATTTGCTTCGTCATGATTCTCAACATGATGGTGGACTGAACACGCCACCTGTGGACCCCTTGCGTGAAAAAAGAATCAGGCGAATACATAAGGCATTGGACTCAGATGATGTTGAACTTGTGAAACTTCTTTTATCTGAGTCGAATATAACCTTAGATGAAGCCCATGCTCTCCACTACGCTGCAGCTTACTGTGATCGTAAGATTGTTACTGAAGTTCTTGCTTTGGGTCTGGCTGATGTTAACCTTCGGAATTCTCGGGGTTATACCGTGCTTCACATTGCTGTGATGCGCAAAGAGCCATCAATTATAGTATTGCTTCTTAGTAAAGGAGCTCGTGCATCAGAGCTGACATCAGATGGTCAGAGTGCGGTTAGTATTTGCCGGCGGTTGACAAGGCCAAAGGATTATCATTCAAAAACAGGGCAGGGGCAAGAAACGAACAAGGATCGAATTTGCATTGATGTTCTAGAGAGAGAAATGCGGAGGAATCCAATGGCGGGAAATGCATCTATGTCTTCCCAAACAATGGCTGATGATCTGCACATGAAATTGCTGTACCTGGAGAACAGAGGTAAGGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0042802 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

438

Amino Acids

48.56

Weight (kDa)

6.32

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 59 - 150 6.5e-12 BTB/POZ domain
DUF3420 PF11900 225 - 273 8.2e-11 Domain of unknown function (DUF3420)
Ank_2 PF12796 273 - 356 8.2e-10 Ankyrin repeats (3 copies)
NPR1_like_C PF12313 372 - 434 3.3e-24 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45110 AT5G45110
fragaria_vesca FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa Rorug02G0432800 Rorug05G0051600
rosa_samantha Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1022
Acc36I ACCTGC 1 cut(s) 481
AccB7I CCANNNNNTGG 2 cut(s) 157, 1258
AccI GTMKAC 2 cut(s) 395, 469
AciI CCGC 4 cut(s) 1100, 1117, 1213, 1229
AclWI GGATC 1 cut(s) 1185
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 982, 1182
AcuI CTGAAG 2 cut(s) 428, 963
AcyI GRCGYC 1 cut(s) 553
AfaI GTAC 1 cut(s) 1289
AfiI CCNNNNNNNGG 4 cut(s) 145, 157, 1229, 1258
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 7 cut(s) 69, 95, 113, 271, 540, 845, 1146
AjnI CCWGG 1 cut(s) 1290
Alw21I GWGCWC 2 cut(s) 444, 1066
Alw44I GTGCAC 1 cut(s) 440
AlwI GGATC 1 cut(s) 1185
Ama87I CYCGRG 1 cut(s) 987
AoxI GGCC 2 cut(s) 3, 1127
ApaLI GTGCAC 1 cut(s) 440
ApeKI GCWGC 3 cut(s) 611, 911, 914
ApoI RAATTY 2 cut(s) 982, 1182
AspLEI GCGC 2 cut(s) 455, 1023
AspS9I GGNCC 2 cut(s) 148, 784
AsuHPI GGTGA 4 cut(s) 36, 173, 215, 362
AvaI CYCGRG 1 cut(s) 987
AvaII GGWCC 2 cut(s) 148, 784
BaeGI GKGCMC 1 cut(s) 444
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 1066
BarI GAAGNNNNNNTAC 2 cut(s) 223, 255
BauI CACGAG 1 cut(s) 1065
BbsI GAAGAC 2 cut(s) 279, 1239
Bbv12I GWGCWC 2 cut(s) 444, 1066
BbvI GCAGC 3 cut(s) 598, 898, 926
BccI CCATC 4 cut(s) 28, 752, 1039, 1082
BciT130I CCWGG 1 cut(s) 1292
BfaI CTAG 3 cut(s) 105, 243, 1199
BfmI CTRYAG 2 cut(s) 651, 912
BfuAI ACCTGC 1 cut(s) 481
BglII AGATCT 2 cut(s) 529, 673
BisI GCNGC 3 cut(s) 612, 912, 915
BlpI GCTNAGC 2 cut(s) 15, 134
BlsI GCNGC 3 cut(s) 613, 913, 916
Bme1390I CCNGG 1 cut(s) 1292
Bme18I GGWCC 2 cut(s) 148, 784
BmeT110I CYCGRG 1 cut(s) 987
BmgT120I GGNCC 2 cut(s) 148, 784
BmiI GGNNCC 1 cut(s) 786
BmrFI CCNGG 1 cut(s) 1292
BmsI GCATC 5 cut(s) 175, 693, 1008, 1079, 1247
BpiI GAAGAC 2 cut(s) 279, 1239
BpmI CTGGAG 1 cut(s) 1313
Bpu1102I GCTNAGC 2 cut(s) 15, 134
BpuEI CTTGAG 1 cut(s) 403
BsaAI YACGTR 1 cut(s) 391
BsaHI GRCGYC 1 cut(s) 553
BsaJI CCNNGG 1 cut(s) 420
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 157, 1229, 1258
Bse118I RCCGGY 1 cut(s) 1113
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 1008
BseBI CCWGG 1 cut(s) 1292
BseDI CCNNGG 1 cut(s) 420
BseLI CCNNNNNNNGG 4 cut(s) 145, 157, 1229, 1258
BseMI GCAATG 1 cut(s) 1008
BseMII CTCAG 4 cut(s) 6, 282, 846, 858
BseNI ACTGG 1 cut(s) 403
BseSI GKGCMC 1 cut(s) 444
BseXI GCAGC 3 cut(s) 598, 898, 926
BsgI GTGCAG 1 cut(s) 1256
BshFI GGCC 2 cut(s) 5, 1129
BsiHKAI GWGCWC 2 cut(s) 444, 1066
BsiHKCI CYCGRG 1 cut(s) 987
BsiSI CCGG 1 cut(s) 1114
BslI CCNNNNNNNGG 4 cut(s) 145, 157, 1229, 1258
BsnI GGCC 2 cut(s) 5, 1129
BsoBI CYCGRG 1 cut(s) 987
Bsp1286I GDGCHC 2 cut(s) 444, 1066
Bsp143I GATC 6 cut(s) 529, 668, 673, 925, 1177, 1267
Bsp1720I GCTNAGC 2 cut(s) 15, 134
BspACI CCGC 4 cut(s) 1100, 1117, 1213, 1229
BspANI GGCC 2 cut(s) 5, 1129
BspCNI CTCAG 4 cut(s) 7, 283, 845, 859
BspHI TCATGA 1 cut(s) 742
BspLI GGNNCC 1 cut(s) 786
BspMAI CTGCAG 1 cut(s) 916
BspMI ACCTGC 1 cut(s) 481
BspPI GGATC 1 cut(s) 1185
BsrDI GCAATG 1 cut(s) 1008
BsrFI RCCGGY 1 cut(s) 1113
BsrI ACTGG 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 1113
BssECI CCNNGG 1 cut(s) 420
BssMI GATC 6 cut(s) 529, 668, 673, 925, 1177, 1267
BssNAI GTATAC 1 cut(s) 396
BssNI GRCGYC 1 cut(s) 553
BssSI CACGAG 1 cut(s) 1065
Bst1107I GTATAC 1 cut(s) 396
Bst2BI CACGAG 1 cut(s) 1065
Bst2UI CCWGG 1 cut(s) 1292
Bst4CI ACNGT 3 cut(s) 623, 923, 1000
Bst6I CTCTTC 1 cut(s) 514
BstACI GRCGYC 1 cut(s) 553
BstBAI YACGTR 1 cut(s) 391
BstC8I GCNNGC 3 cut(s) 440, 635, 1115
BstDEI CTNAG 8 cut(s) 15, 134, 140, 291, 832, 867, 883, 1052
BstDSI CCRYGG 1 cut(s) 420
BstHHI GCGC 2 cut(s) 455, 1023
BstKTI GATC 6 cut(s) 532, 671, 676, 928, 1180, 1270
BstMBI GATC 6 cut(s) 529, 668, 673, 925, 1177, 1267
BstMWI GCNNNNNNNGC 4 cut(s) 11, 309, 1027, 1235
BstNI CCWGG 1 cut(s) 1292
BstSCI CCNGG 1 cut(s) 1290
BstSFI CTRYAG 2 cut(s) 651, 912
BstSLI GKGCMC 1 cut(s) 444
BstV1I GCAGC 3 cut(s) 598, 898, 926
BstV2I GAAGAC 2 cut(s) 279, 1239
BstX2I RGATCY 2 cut(s) 529, 673
BstYI RGATCY 2 cut(s) 529, 673
BstZ17I GTATAC 1 cut(s) 396
BsuRI GGCC 2 cut(s) 5, 1129
BtgI CCRYGG 1 cut(s) 420
BtsIMutI CAGTG 1 cut(s) 619
BveI ACCTGC 1 cut(s) 481
Cac8I GCNNGC 3 cut(s) 440, 635, 1115
CciI TCATGA 1 cut(s) 742
CfoI GCGC 2 cut(s) 455, 1023
Cfr10I RCCGGY 1 cut(s) 1113
Cfr13I GGNCC 2 cut(s) 148, 784
CseI GACGC 1 cut(s) 561
Csp6I GTAC 1 cut(s) 1288
CviAII CATG 6 cut(s) 458, 465, 743, 755, 896, 1276
CviQI GTAC 1 cut(s) 1288
DdeI CTNAG 8 cut(s) 15, 134, 140, 291, 832, 867, 883, 1052
DpnI GATC 6 cut(s) 531, 670, 675, 927, 1179, 1269
DpnII GATC 6 cut(s) 529, 668, 673, 925, 1177, 1267
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 514
EarI CTCTTC 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 1064
Eco24I GRGCYC 1 cut(s) 1066
Eco47I GGWCC 2 cut(s) 148, 784
Eco53kI GAGCTC 1 cut(s) 1064
Eco57I CTGAAG 2 cut(s) 428, 963
Eco88I CYCGRG 1 cut(s) 987
EcoICRI GAGCTC 1 cut(s) 1064
EcoRI GAATTC 1 cut(s) 982
EcoRII CCWGG 1 cut(s) 1290
EcoT22I ATGCAT 1 cut(s) 1240
EcoT38I GRGCYC 1 cut(s) 1066
FaeI CATG 6 cut(s) 461, 468, 746, 758, 899, 1279
FatI CATG 6 cut(s) 457, 464, 742, 754, 895, 1275
FauI CCCGC 1 cut(s) 1222
FblI GTMKAC 2 cut(s) 395, 469
Fnu4HI GCNGC 3 cut(s) 612, 912, 915
FriOI GRGCYC 1 cut(s) 1066
Fsp4HI GCNGC 3 cut(s) 612, 912, 915
FspBI CTAG 3 cut(s) 105, 243, 1199
FspI TGCGCA 1 cut(s) 1022
GlaI GCGC 2 cut(s) 454, 1022
GluI GCNGC 3 cut(s) 612, 912, 915
GsuI CTGGAG 1 cut(s) 1313
HaeIII GGCC 2 cut(s) 5, 1129
HapII CCGG 1 cut(s) 1114
HgaI GACGC 1 cut(s) 561
HhaI GCGC 2 cut(s) 455, 1023
Hin1I GRCGYC 1 cut(s) 553
Hin1II CATG 6 cut(s) 461, 468, 746, 758, 899, 1279
Hin6I GCGC 2 cut(s) 453, 1021
HinP1I GCGC 2 cut(s) 453, 1021
HincII GTYRAC 3 cut(s) 432, 973, 1122
HindII GTYRAC 3 cut(s) 432, 973, 1122
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 8 cut(s) 164, 209, 461, 746, 804, 830, 869, 1219
HpaI GTTAAC 1 cut(s) 973
HpaII CCGG 1 cut(s) 1114
HphI GGTGA 4 cut(s) 36, 173, 215, 362
Hpy166II GTNNAC 9 cut(s) 223, 396, 432, 442, 470, 764, 784, 973, 1122
Hpy188I TCNGA 8 cut(s) 292, 673, 835, 868, 981, 1075, 1087, 1095
Hpy188III TCNNGA 5 cut(s) 110, 382, 677, 743, 1199
Hpy8I GTNNAC 9 cut(s) 223, 396, 432, 442, 470, 764, 784, 973, 1122
Hpy99I CGWCG 1 cut(s) 555
HpyAV CCTTC 6 cut(s) 57, 289, 325, 423, 566, 986
HpyCH4III ACNGT 3 cut(s) 623, 923, 1000
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 8 cut(s) 261, 442, 476, 914, 1070, 1188, 1238, 1273
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 309, 1027, 1235
HpyF3I CTNAG 8 cut(s) 15, 134, 140, 291, 832, 867, 883, 1052
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 553
Hsp92II CATG 6 cut(s) 461, 468, 746, 758, 899, 1279
HspAI GCGC 2 cut(s) 453, 1021
KroI GCCGGC 1 cut(s) 1113
KroNI GCCGGC 1 cut(s) 1115
KspAI GTTAAC 1 cut(s) 973
Kzo9I GATC 6 cut(s) 529, 668, 673, 925, 1177, 1267
LmnI GCTCC 1 cut(s) 1061
Lsp1109I GCAGC 3 cut(s) 598, 898, 926
LweI GCATC 5 cut(s) 175, 693, 1008, 1079, 1247
MaeI CTAG 3 cut(s) 105, 243, 1199
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 350, 937
MalI GATC 6 cut(s) 531, 670, 675, 927, 1179, 1269
MboI GATC 6 cut(s) 529, 668, 673, 925, 1177, 1267
MboII GAAGA 6 cut(s) 18, 78, 279, 501, 599, 1239
MflI RGATCY 2 cut(s) 529, 673
MhlI GDGCHC 2 cut(s) 444, 1066
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 7, 481, 494, 562, 730, 982, 1035, 1182, 1280
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 455, 824, 878
MnlI CCTC 7 cut(s) 196, 292, 418, 517, 706, 1209, 1295
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1240
MroNI GCCGGC 1 cut(s) 1113
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 561, 729, 972
MslI CAYNNNNRTG 2 cut(s) 759, 1013
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 1114
MspR9I CCNGG 1 cut(s) 1292
MvaI CCWGG 1 cut(s) 1292
MwoI GCNNNNNNNGC 4 cut(s) 11, 309, 1027, 1235
NaeI GCCGGC 1 cut(s) 1115
NdeII GATC 6 cut(s) 529, 668, 673, 925, 1177, 1267
NgoMIV GCCGGC 1 cut(s) 1113
NlaIII CATG 6 cut(s) 461, 468, 746, 758, 899, 1279
NlaIV GGNNCC 1 cut(s) 786
NmuCI GTSAC 1 cut(s) 350
NsbI TGCGCA 1 cut(s) 1022
NsiI ATGCAT 1 cut(s) 1240
PagI TCATGA 1 cut(s) 742
PdiI GCCGGC 1 cut(s) 1115
PfeI GAWTC 5 cut(s) 164, 209, 746, 804, 1219
PflMI CCANNNNNTGG 2 cut(s) 157, 1258
PkrI GCNGC 3 cut(s) 613, 913, 916
PleI GAGTC 3 cut(s) 455, 824, 877
PpsI GAGTC 3 cut(s) 455, 824, 877
Ppu21I YACGTR 1 cut(s) 391
Psp124BI GAGCTC 1 cut(s) 1066
Psp6I CCWGG 1 cut(s) 1290
PspGI CCWGG 1 cut(s) 1290
PspN4I GGNNCC 1 cut(s) 786
PspPI GGNCC 2 cut(s) 148, 784
PstI CTGCAG 1 cut(s) 916
PsuI RGATCY 2 cut(s) 529, 673
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 1289
RsaNI GTAC 1 cut(s) 1288
RseI CAYNNNNRTG 2 cut(s) 759, 1013
SacI GAGCTC 1 cut(s) 1066
SaqAI TTAA 3 cut(s) 561, 729, 972
SatI GCNGC 3 cut(s) 612, 912, 915
Sau3AI GATC 6 cut(s) 529, 668, 673, 925, 1177, 1267
Sau96I GGNCC 2 cut(s) 148, 784
SchI GAGTC 3 cut(s) 455, 824, 878
ScrFI CCNGG 1 cut(s) 1292
SduI GDGCHC 2 cut(s) 444, 1066
SfaNI GCATC 5 cut(s) 175, 693, 1008, 1079, 1247
SfcI CTRYAG 2 cut(s) 651, 912
SinI GGWCC 2 cut(s) 148, 784
SmiMI CAYNNNNRTG 2 cut(s) 759, 1013
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 9 cut(s) 7, 481, 494, 562, 730, 982, 1035, 1182, 1280
SsiI CCGC 4 cut(s) 1100, 1117, 1213, 1229
SspI AATATT 1 cut(s) 543
SspMI CTAG 3 cut(s) 105, 243, 1199
SstI GAGCTC 1 cut(s) 1066
StyD4I CCNGG 1 cut(s) 1290
TaaI ACNGT 3 cut(s) 623, 923, 1000
TaiI ACGT 1 cut(s) 393
TaqI TCGA 3 cut(s) 546, 872, 1180
TasI AATT 9 cut(s) 7, 481, 494, 562, 730, 982, 1035, 1182, 1280
TfiI GAWTC 5 cut(s) 164, 209, 746, 804, 1219
Tru1I TTAA 3 cut(s) 561, 729, 972
Tru9I TTAA 3 cut(s) 561, 729, 972
TscAI CASTG 1 cut(s) 626
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 3 cut(s) 611, 911, 914
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 4 cut(s) 344, 378, 903, 1292
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 1 cut(s) 626
Van91I CCANNNNNTGG 2 cut(s) 157, 1258
VneI GTGCAC 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 148, 784
XapI RAATTY 2 cut(s) 982, 1182
XbaI TCTAGA 1 cut(s) 1198
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmiI GTMKAC 2 cut(s) 395, 469
XspI CTAG 3 cut(s) 105, 243, 1199
Zsp2I ATGCAT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.