FvH4_3g11950

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000570
Physical Location & Seq
Reverse (-)
7057756 .. 7062518
4763 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11950.t5

Sequence Viewer

Length: 1680 bp
ATGGCGAATTCAGCCTTGCCTAGTCTTGAAGTCATCAGTTTGACCAAGCTTAGCTCTAGTTTGGAGCAGCTCTTGCTTGATTCTGGCTGTGATTATAGTGATGCCGAAATCATTGTTGAGGGTGATCCTGTTGGTGTTCACCGATGTATATTGGCTTCTAGGAGCAAGTTTTTTTGTGAACTATTTAAGAAAGAAAAGGGGTATTCTGAGAAGGAGGGCAAACTGGGGAAACCAAAGTATAAAATGAAGGATTTGCTACCTTATGGGGACGTTGGATATGAAGCATTTTTGGTTTACTTGAACTACGTGTATACCGGAAAGCTGAAGCCTTCTCCCATTGAGGTGTCAACTTGTGTGCACAATGTATGTGCCCATGACTCATGTAGACCTGCAATCAATTTTGCTGTGGAATTGATGTACGCCTCTTCCATTTTCCAAATGCCGGATTTGGTTTCAGTATTCCAGCGACGCCTTCTTAATTTTGTTGGGAAAGCTATGGCAGAAGATGTCATCCCAATCCTTGTGGTTGGTTTCCACTGTCATTTGAGCGAGCTTGTCACTCATTCCATAGAGAGAGTGGCACGATCAGATCTTGATAGCATCTGTATTGACAAGGAACTTCCTTATGAGGTTGCAGAGAAAATTAAACTGCTTCGTCGTGATTCTCAACATGCTAGTGAACTGAGCACTCCACCTGTGGACCCCTTGCGTGAAAAAAGAATTAGGAGCATACATAAGGCATTAGACTCGGATGATGTTGAACTTGTGAAACTTCTTTTATCTGAGTCGAATATAACCTTAGATGAAGCCCATGCTCTCCACTATGCTGCAGCCTACTGTGATCCTAAGGTTGTTACTGAAGTTCTTGGTCTGGGTATGGCTGATGTTAACCTTCGTAATCCTCGGGGTTATACCGTGCTTCATATTGCTGTGATGCGCAGAGAGCCATCAATAATAGTATTGCTTCTTAGTAAAGGAGCTCGTGCATCAGAGCTGACATCAGATGGTCAAAGTGCAGTTAGTATTTGCCGGCGGTTGACAAGGGCAAAGGACTATCATTCAAAAACAGTGCAGGGGCAAGAAACTAACAAGGACCGAATTTGCATTGATGTTCTAGAGAGAGAAATGCGGAAGAATCCAATGGCAGGAGATGCATCTGTGTCTTCTCAAACAATTGCTGATGATCTGCACATGAAATTGCTGTACCTGGAGAACAGAGTGGCTTTTGCTCGTTTGTTTTTCCCTAGTGAAGCAAAGCTAGCCATGGTCGTTGCTCAATCCGACACAACATCTGAGTTTGCTGGAATCTCTCCATCAAAAGGCTCAAGCGGGAATTTGATGGAGGTTGATTTAAACGAGACCCCCACAGTGCAGAAGAAAAGACTCCATTCTAGGTTGGAATCCCTTATGAAAACAGTCAACATGGGTAGATGCTATTTCCCTCATTGCTCAGAAGTCCTGGATAAGTTTATGGAGGATGACCTGCCTGATTTGTTCTTTCTTGAGACGGGTACCCCTGACGAGCAGAAAATAAAGAGGATGCGTTTCATGGAGCTCAAGGATGAAGTCCAGAAGGCATTTAGCAAGGACAAAGCGGAGCTCAACCTCTCTGGGTTGACTTCTTCATCATCCTCATCATCTCCAAAAAAAGTTGGTGTAAATCACAAGACTAGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0042802 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

560

Amino Acids

62.46

Weight (kDa)

6.62

Isoelectric Point (pI)

42.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 57 - 142 1.1e-08 BTB/POZ domain
DUF3420 PF11900 225 - 273 4e-10 Domain of unknown function (DUF3420)
Ank_2 PF12796 273 - 356 6.5e-09 Ankyrin repeats (3 copies)
NPR1_like_C PF12313 372 - 574 1.8e-91 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45110 AT5G45110
fragaria_vesca FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa Rorug02G0432800 Rorug05G0051600
rosa_samantha Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 938
Acc36I ACCTGC 2 cut(s) 397, 1491
Acc65I GGTACC 1 cut(s) 1511
AccB1I GGYRCC 1 cut(s) 1511
AccI GTMKAC 2 cut(s) 311, 385
AciI CCGC 4 cut(s) 1033, 1129, 1329, 1595
AclWI GGATC 2 cut(s) 119, 836
AcsI RAATTY 3 cut(s) 7, 1098, 1333
AcuI CTGAAG 2 cut(s) 344, 879
AcyI GRCGYC 1 cut(s) 469
AfaI GTAC 3 cut(s) 419, 1205, 1513
AfiI CCNNNNNNNGG 3 cut(s) 442, 1145, 1319
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 4 cut(s) 29, 301, 761, 1062
AjnI CCWGG 2 cut(s) 1206, 1458
Alw21I GWGCWC 5 cut(s) 360, 689, 982, 1557, 1602
Alw26I GTCTC 2 cut(s) 1352, 1499
Alw44I GTGCAC 1 cut(s) 356
AlwI GGATC 2 cut(s) 119, 836
Ama87I CYCGRG 1 cut(s) 903
ApaLI GTGCAC 1 cut(s) 356
ApeKI GCWGC 3 cut(s) 67, 827, 830
ApoI RAATTY 3 cut(s) 7, 1098, 1333
Asp718I GGTACC 1 cut(s) 1511
AspLEI GCGC 1 cut(s) 939
AspS9I GGNCC 2 cut(s) 700, 1093
AsuHPI GGTGA 2 cut(s) 131, 134
AsuNHI GCTAGC 1 cut(s) 1258
AvaI CYCGRG 1 cut(s) 903
AvaII GGWCC 2 cut(s) 700, 1093
AxyI CCTNAGG 1 cut(s) 846
BaeGI GKGCMC 2 cut(s) 360, 373
BanI GGYRCC 1 cut(s) 1511
BanII GRGCYC 3 cut(s) 982, 1557, 1602
BarI GAAGNNNNNNTAC 2 cut(s) 139, 171
BauI CACGAG 1 cut(s) 981
BbsI GAAGAC 1 cut(s) 1155
Bbv12I GWGCWC 5 cut(s) 360, 689, 982, 1557, 1602
BbvI GCAGC 3 cut(s) 79, 814, 842
BccI CCATC 4 cut(s) 955, 998, 1321, 1333
BcgI CGANNNNNNTGC 2 cut(s) 729, 763
BciT130I CCWGG 2 cut(s) 1208, 1460
BcoDI GTCTC 2 cut(s) 1352, 1499
BfaI CTAG 9 cut(s) 21, 57, 159, 675, 1115, 1245, 1259, 1392, 1671
BfmI CTRYAG 1 cut(s) 828
BfuAI ACCTGC 2 cut(s) 397, 1491
BglII AGATCT 1 cut(s) 589
BisI GCNGC 3 cut(s) 68, 828, 831
BlpI GCTNAGC 1 cut(s) 50
BlsI GCNGC 3 cut(s) 69, 829, 832
Bme1390I CCNGG 2 cut(s) 1208, 1460
Bme18I GGWCC 2 cut(s) 700, 1093
BmeT110I CYCGRG 1 cut(s) 903
BmgT120I GGNCC 2 cut(s) 700, 1093
BmiI GGNNCC 2 cut(s) 702, 1513
BmrFI CCNGG 2 cut(s) 1208, 1460
BmrI ACTGGG 1 cut(s) 233
BmsI GCATC 8 cut(s) 91, 609, 924, 995, 1141, 1163, 1421, 1530
BmtI GCTAGC 1 cut(s) 1262
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 1155
BpmI CTGGAG 1 cut(s) 1229
Bpu1102I GCTNAGC 1 cut(s) 50
BpuEI CTTGAG 3 cut(s) 1309, 1523, 1541
BsaAI YACGTR 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 469
BsaI GGTCTC 1 cut(s) 1352
BsaJI CCNNGG 2 cut(s) 902, 1263
BsaWI WCCGGW 1 cut(s) 314
Bsc4I CCNNNNNNNGG 3 cut(s) 442, 1145, 1319
Bse118I RCCGGY 1 cut(s) 1029
Bse1I ACTGG 1 cut(s) 228
Bse21I CCTNAGG 1 cut(s) 846
Bse3DI GCAATG 1 cut(s) 1444
BseBI CCWGG 2 cut(s) 1208, 1460
BseDI CCNNGG 2 cut(s) 902, 1263
BseGI GGATG 6 cut(s) 510, 757, 1483, 1545, 1567, 1628
BseLI CCNNNNNNNGG 3 cut(s) 442, 1145, 1319
BseMI GCAATG 1 cut(s) 1444
BseMII CTCAG 5 cut(s) 198, 674, 774, 1284, 1464
BseNI ACTGG 1 cut(s) 228
BseSI GKGCMC 2 cut(s) 360, 373
BseXI GCAGC 3 cut(s) 79, 814, 842
BsgI GTGCAG 4 cut(s) 1035, 1091, 1172, 1391
BshNI GGYRCC 1 cut(s) 1511
BsiHKAI GWGCWC 5 cut(s) 360, 689, 982, 1557, 1602
BsiHKCI CYCGRG 1 cut(s) 903
BsiSI CCGG 3 cut(s) 315, 443, 1030
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 442, 1145, 1319
BsmAI GTCTC 2 cut(s) 1352, 1499
BsmBI CGTCTC 1 cut(s) 1499
BsmFI GGGAC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 1352
BsoBI CYCGRG 1 cut(s) 903
Bsp1286I GDGCHC 6 cut(s) 360, 373, 689, 982, 1557, 1602
Bsp143I GATC 5 cut(s) 124, 584, 589, 841, 1183
Bsp1720I GCTNAGC 1 cut(s) 50
Bsp19I CCATGG 1 cut(s) 1263
BspACI CCGC 4 cut(s) 1033, 1129, 1329, 1595
BspCNI CTCAG 5 cut(s) 199, 675, 775, 1285, 1463
BspLI GGNNCC 2 cut(s) 702, 1513
BspMAI CTGCAG 1 cut(s) 832
BspMI ACCTGC 2 cut(s) 397, 1491
BspOI GCTAGC 1 cut(s) 1262
BspPI GGATC 2 cut(s) 119, 836
BspT107I GGYRCC 1 cut(s) 1511
BspTNI GGTCTC 1 cut(s) 1352
BsrDI GCAATG 1 cut(s) 1444
BsrFI RCCGGY 1 cut(s) 1029
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 1029
BssECI CCNNGG 2 cut(s) 902, 1263
BssMI GATC 5 cut(s) 124, 584, 589, 841, 1183
BssNAI GTATAC 1 cut(s) 312
BssNI GRCGYC 1 cut(s) 469
BssSI CACGAG 1 cut(s) 981
BssT1I CCWWGG 1 cut(s) 1263
Bst1107I GTATAC 1 cut(s) 312
Bst2BI CACGAG 1 cut(s) 981
Bst2UI CCWGG 2 cut(s) 1208, 1460
Bst4CI ACNGT 6 cut(s) 539, 839, 916, 1069, 1369, 1417
Bst6I CTCTTC 1 cut(s) 430
BstACI GRCGYC 1 cut(s) 469
BstAPI GCANNNNNTGC 2 cut(s) 73, 1151
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 3 cut(s) 551, 1031, 1260
BstDEI CTNAG 9 cut(s) 50, 207, 683, 783, 799, 846, 968, 1293, 1450
BstDSI CCRYGG 1 cut(s) 1263
BstF5I GGATG 6 cut(s) 510, 757, 1483, 1545, 1567, 1628
BstHHI GCGC 1 cut(s) 939
BstKTI GATC 5 cut(s) 127, 587, 592, 844, 1186
BstMAI GTCTC 2 cut(s) 1352, 1499
BstMBI GATC 5 cut(s) 124, 584, 589, 841, 1183
BstMWI GCNNNNNNNGC 5 cut(s) 11, 73, 943, 1151, 1259
BstNI CCWGG 2 cut(s) 1208, 1460
BstNSI RCATGY 1 cut(s) 674
BstSCI CCNGG 2 cut(s) 1206, 1458
BstSFI CTRYAG 1 cut(s) 828
BstSLI GKGCMC 2 cut(s) 360, 373
BstV1I GCAGC 3 cut(s) 79, 814, 842
BstV2I GAAGAC 1 cut(s) 1155
BstX2I RGATCY 1 cut(s) 589
BstYI RGATCY 1 cut(s) 589
BstZ17I GTATAC 1 cut(s) 312
Bsu36I CCTNAGG 1 cut(s) 846
BtgI CCRYGG 1 cut(s) 1263
BtsCI GGATG 6 cut(s) 510, 757, 1483, 1545, 1567, 1628
BtsIMutI CAGTG 3 cut(s) 535, 1074, 1374
BveI ACCTGC 2 cut(s) 397, 1491
Cac8I GCNNGC 3 cut(s) 551, 1031, 1260
CfoI GCGC 1 cut(s) 939
Cfr10I RCCGGY 1 cut(s) 1029
Cfr13I GGNCC 2 cut(s) 700, 1093
CseI GACGC 1 cut(s) 477
Csp6I GTAC 3 cut(s) 418, 1204, 1512
CspCI CAANNNNNGTGG 2 cut(s) 504, 539
CviAII CATG 8 cut(s) 374, 381, 671, 812, 1192, 1264, 1423, 1549
CviQI GTAC 3 cut(s) 418, 1204, 1512
DdeI CTNAG 9 cut(s) 50, 207, 683, 783, 799, 846, 968, 1293, 1450
DpnI GATC 5 cut(s) 126, 586, 591, 843, 1185
DpnII GATC 5 cut(s) 124, 584, 589, 841, 1183
DraI TTTAAA 1 cut(s) 1353
Eam1104I CTCTTC 1 cut(s) 430
EarI CTCTTC 1 cut(s) 430
Ecl136II GAGCTC 3 cut(s) 980, 1555, 1600
Eco130I CCWWGG 1 cut(s) 1263
Eco24I GRGCYC 3 cut(s) 982, 1557, 1602
Eco31I GGTCTC 1 cut(s) 1352
Eco47I GGWCC 2 cut(s) 700, 1093
Eco53kI GAGCTC 3 cut(s) 980, 1555, 1600
Eco57I CTGAAG 2 cut(s) 344, 879
Eco81I CCTNAGG 1 cut(s) 846
Eco88I CYCGRG 1 cut(s) 903
EcoICRI GAGCTC 3 cut(s) 980, 1555, 1600
EcoRI GAATTC 1 cut(s) 7
EcoRII CCWGG 2 cut(s) 1206, 1458
EcoT14I CCWWGG 1 cut(s) 1263
EcoT22I ATGCAT 1 cut(s) 1156
EcoT38I GRGCYC 3 cut(s) 982, 1557, 1602
ErhI CCWWGG 1 cut(s) 1263
Esp3I CGTCTC 1 cut(s) 1499
FaeI CATG 8 cut(s) 377, 384, 674, 815, 1195, 1267, 1426, 1552
FaqI GGGAC 1 cut(s) 281
FatI CATG 8 cut(s) 373, 380, 670, 811, 1191, 1263, 1422, 1548
FauI CCCGC 1 cut(s) 1322
FblI GTMKAC 2 cut(s) 311, 385
Fnu4HI GCNGC 3 cut(s) 68, 828, 831
FokI GGATG 6 cut(s) 497, 764, 1490, 1552, 1574, 1615
FriOI GRGCYC 3 cut(s) 982, 1557, 1602
Fsp4HI GCNGC 3 cut(s) 68, 828, 831
FspBI CTAG 9 cut(s) 21, 57, 159, 675, 1115, 1245, 1259, 1392, 1671
FspI TGCGCA 1 cut(s) 938
GlaI GCGC 1 cut(s) 938
GluI GCNGC 3 cut(s) 68, 828, 831
GsuI CTGGAG 1 cut(s) 1229
HapII CCGG 3 cut(s) 315, 443, 1030
HgaI GACGC 1 cut(s) 477
HhaI GCGC 1 cut(s) 939
Hin1I GRCGYC 1 cut(s) 469
Hin1II CATG 8 cut(s) 377, 384, 674, 815, 1195, 1267, 1426, 1552
Hin6I GCGC 1 cut(s) 937
HinP1I GCGC 1 cut(s) 937
HincII GTYRAC 5 cut(s) 348, 889, 1038, 1420, 1617
HindII GTYRAC 5 cut(s) 348, 889, 1038, 1420, 1617
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 9 cut(s) 80, 377, 662, 746, 785, 1135, 1305, 1383, 1400
HpaI GTTAAC 1 cut(s) 889
HpaII CCGG 3 cut(s) 315, 443, 1030
HphI GGTGA 2 cut(s) 131, 134
Hpy188I TCNGA 9 cut(s) 208, 589, 751, 784, 991, 1003, 1282, 1294, 1453
Hpy188III TCNNGA 6 cut(s) 26, 593, 659, 1115, 1502, 1570
Hpy99I CGWCG 2 cut(s) 471, 660
HpyAV CCTTC 6 cut(s) 205, 241, 339, 482, 902, 1567
HpyCH4III ACNGT 6 cut(s) 539, 839, 916, 1069, 1369, 1417
HpyCH4IV ACGT 2 cut(s) 270, 306
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 73, 943, 1151, 1259
HpyF3I CTNAG 9 cut(s) 50, 207, 683, 783, 799, 846, 968, 1293, 1450
HpySE526I ACGT 2 cut(s) 270, 306
Hsp92I GRCGYC 1 cut(s) 469
Hsp92II CATG 8 cut(s) 377, 384, 674, 815, 1195, 1267, 1426, 1552
HspAI GCGC 1 cut(s) 937
KpnI GGTACC 1 cut(s) 1515
KroI GCCGGC 1 cut(s) 1029
KroNI GCCGGC 1 cut(s) 1031
KspAI GTTAAC 1 cut(s) 889
Kzo9I GATC 5 cut(s) 124, 584, 589, 841, 1183
LmnI GCTCC 6 cut(s) 64, 162, 726, 977, 1552, 1597
Lsp1109I GCAGC 3 cut(s) 79, 814, 842
LweI GCATC 8 cut(s) 91, 609, 924, 995, 1141, 1163, 1421, 1530
MaeI CTAG 9 cut(s) 21, 57, 159, 675, 1115, 1245, 1259, 1392, 1671
MaeII ACGT 2 cut(s) 270, 306
MaeIII GTNAC 2 cut(s) 556, 853
MalI GATC 5 cut(s) 126, 586, 591, 843, 1185
MboI GATC 5 cut(s) 124, 584, 589, 841, 1183
MboII GAAGA 6 cut(s) 417, 515, 1144, 1155, 1387, 1614
MfeI CAATTG 1 cut(s) 1173
MflI RGATCY 1 cut(s) 589
MhlI GDGCHC 6 cut(s) 360, 373, 689, 982, 1557, 1602
MlyI GAGTC 4 cut(s) 371, 740, 794, 1377
MmeI TCCRAC 3 cut(s) 253, 1305, 1377
Mph1103I ATGCAT 1 cut(s) 1156
MroNI GCCGGC 1 cut(s) 1029
MseI TTAA 5 cut(s) 186, 477, 645, 888, 1352
MslI CAYNNNNRTG 2 cut(s) 341, 675
MspI CCGG 3 cut(s) 315, 443, 1030
MspR9I CCNGG 2 cut(s) 1208, 1460
MunI CAATTG 1 cut(s) 1173
MvaI CCWGG 2 cut(s) 1208, 1460
MwoI GCNNNNNNNGC 5 cut(s) 11, 73, 943, 1151, 1259
NaeI GCCGGC 1 cut(s) 1031
NcoI CCATGG 1 cut(s) 1263
NdeII GATC 5 cut(s) 124, 584, 589, 841, 1183
NgoMIV GCCGGC 1 cut(s) 1029
NheI GCTAGC 1 cut(s) 1258
NlaIII CATG 8 cut(s) 377, 384, 674, 815, 1195, 1267, 1426, 1552
NlaIV GGNNCC 2 cut(s) 702, 1513
NmuCI GTSAC 1 cut(s) 556
NsbI TGCGCA 1 cut(s) 938
NsiI ATGCAT 1 cut(s) 1156
NspI RCATGY 1 cut(s) 674
PdiI GCCGGC 1 cut(s) 1031
PfeI GAWTC 5 cut(s) 80, 662, 1135, 1305, 1400
PfoI TCCNGGA 1 cut(s) 1458
PkrI GCNGC 3 cut(s) 69, 829, 832
PleI GAGTC 4 cut(s) 371, 740, 793, 1377
PpsI GAGTC 4 cut(s) 371, 740, 793, 1377
Ppu21I YACGTR 1 cut(s) 307
Psp124BI GAGCTC 3 cut(s) 982, 1557, 1602
Psp6I CCWGG 2 cut(s) 1206, 1458
PspGI CCWGG 2 cut(s) 1206, 1458
PspN4I GGNNCC 2 cut(s) 702, 1513
PspPI GGNCC 2 cut(s) 700, 1093
PstI CTGCAG 1 cut(s) 832
PsuI RGATCY 1 cut(s) 589
RsaI GTAC 3 cut(s) 419, 1205, 1513
RsaNI GTAC 3 cut(s) 418, 1204, 1512
RseI CAYNNNNRTG 2 cut(s) 341, 675
SacI GAGCTC 3 cut(s) 982, 1557, 1602
SaqAI TTAA 5 cut(s) 186, 477, 645, 888, 1352
SatI GCNGC 3 cut(s) 68, 828, 831
Sau3AI GATC 5 cut(s) 124, 584, 589, 841, 1183
Sau96I GGNCC 2 cut(s) 700, 1093
SchI GAGTC 4 cut(s) 371, 740, 794, 1377
ScrFI CCNGG 2 cut(s) 1208, 1460
SduI GDGCHC 6 cut(s) 360, 373, 689, 982, 1557, 1602
SfaNI GCATC 8 cut(s) 91, 609, 924, 995, 1141, 1163, 1421, 1530
SfcI CTRYAG 1 cut(s) 828
SinI GGWCC 2 cut(s) 700, 1093
SmiMI CAYNNNNRTG 2 cut(s) 341, 675
SmlI CTYRAG 3 cut(s) 1324, 1502, 1556
SmoI CTYRAG 3 cut(s) 1324, 1502, 1556
SsiI CCGC 4 cut(s) 1033, 1129, 1329, 1595
SspMI CTAG 9 cut(s) 21, 57, 159, 675, 1115, 1245, 1259, 1392, 1671
SstI GAGCTC 3 cut(s) 982, 1557, 1602
StyD4I CCNGG 2 cut(s) 1206, 1458
StyI CCWWGG 1 cut(s) 1263
TaaI ACNGT 6 cut(s) 539, 839, 916, 1069, 1369, 1417
TaiI ACGT 2 cut(s) 273, 309
TaqI TCGA 1 cut(s) 788
TaqII GACCGA 1 cut(s) 1110
TfiI GAWTC 5 cut(s) 80, 662, 1135, 1305, 1400
Tru1I TTAA 5 cut(s) 186, 477, 645, 888, 1352
Tru9I TTAA 5 cut(s) 186, 477, 645, 888, 1352
TscAI CASTG 3 cut(s) 542, 1074, 1374
TseFI GTSAC 1 cut(s) 556
TseI GCWGC 3 cut(s) 67, 827, 830
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 9 cut(s) 260, 294, 819, 911, 1208, 1424, 1537, 1578, 1614
TspRI CASTG 3 cut(s) 542, 1074, 1374
VneI GTGCAC 1 cut(s) 356
VpaK11BI GGWCC 2 cut(s) 700, 1093
XapI RAATTY 3 cut(s) 7, 1098, 1333
XbaI TCTAGA 1 cut(s) 1114
XceI RCATGY 1 cut(s) 674
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmiI GTMKAC 2 cut(s) 311, 385
XspI CTAG 9 cut(s) 21, 57, 159, 675, 1115, 1245, 1259, 1392, 1671
Zsp2I ATGCAT 1 cut(s) 1156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.