pycom05g23540

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000570
Physical Location & Seq
Forward (+)
25416158 .. 25417298
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23540.2

Sequence Viewer

Length: 942 bp
ATGGCTTATTCAGCTGAACCATCATCCTCTTTGAGCTTTACGTCCTCACCCCCTTTGTCAAATGGTTCGATAAGCCTCAACGTATCGTGTTCGGGCTCCGAATCGGTGCCAAATCTTGAAGTAATCAGTTTGTCCAAGCTTAGTTCCAGTTTGGAGCAGCTGTTGGTTGATCCTGGATGCGATTTTAGTGATGCTGATATTGTCGTTGAGGGGATTCCTGTTGGTGTTCACCGATGTATATTGGCTTCGAGGAGTAGGTTTTTTCGCGAGCTATTCAAGCGAGAAAAGGGGTCTTCTGGGAAGGAAGGCAGGCCAAAGTACTCTATGAGCGATTTGCTGCCTTACGGGGATGTTGGATACGAAGCCTTCTTGGTTTTCTTAAGCTATGTGTATACCGGAAAGCTTAAGCCTTCTCCGATGGAGGTGTCAACGTGCGTTCACAATGGATGTGCCCATGACGCGTGTAGACCTGCTATTAATTTCGTTGTGGAATTGATGTACGCCGCTTCCGTTTTCCAAATGCCCGATCTGGTTTCGATATTCGAGCGGCGCCTTCTTAATTTTGTTGGGAAAGCTCTGCCGGACAATGTTATCCCGATTCTCGTGGTTGCTTTCCATTGTCAGTTGAATCAGCTCATTGCGGAGGGTATAGAGAGAGTGGCACGATCGGATATTGATGATATCTCTATTGAGAAGGGACTTCCTGATGAGGTTGTGAAGAAAATCAAAGTTCTTCGCTGCAAAGCGCAGCAGGATTGCATCTCAAACTTGCCACCTGTGGATCCCTTGCGTGAAAAGAGAATCCGGAGAATACATAAGGCTTTGGACTCGGATGATGTTGAACTTGTGAAACTTCTTTTAACGGAGTCTAATATAACCCTCGACGAAGCAAATGCTCTTCATTATGCTGCAGCTTACTGCGATCATCATACCTGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0042802 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

314

Amino Acids

34.44

Weight (kDa)

5.54

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45110 AT5G45110
fragaria_vesca FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa Rorug02G0432800 Rorug05G0051600
rosa_samantha Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 478
AccB1I GGYRCC 2 cut(s) 106, 549
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 2 cut(s) 392, 466
AccII CGCG 2 cut(s) 267, 461
AccIII TCCGGA 1 cut(s) 804
AciI CCGC 3 cut(s) 504, 547, 641
AclWI GGATC 3 cut(s) 164, 776, 789
AcyI GRCGYC 1 cut(s) 550
AfaI GTAC 2 cut(s) 320, 500
AflII CTTAAG 2 cut(s) 379, 404
AflIII ACRYGT 1 cut(s) 459
AgsI TTSAA 4 cut(s) 119, 277, 628, 842
AjnI CCWGG 1 cut(s) 172
AlwI GGATC 3 cut(s) 164, 776, 789
Aor13HI TCCGGA 1 cut(s) 804
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 6 cut(s) 157, 337, 738, 748, 908, 911
AseI ATTAAT 1 cut(s) 477
AspLEI GCGC 2 cut(s) 552, 748
AsuHPI GGTGA 2 cut(s) 39, 221
BaeGI GKGCMC 1 cut(s) 454
BamHI GGATCC 1 cut(s) 781
BanI GGYRCC 2 cut(s) 106, 549
BanII GRGCYC 1 cut(s) 98
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BauI CACGAG 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 6 cut(s) 169, 324, 725, 760, 895, 923
BccI CCATC 2 cut(s) 28, 412
BcgI CGANNNNNNTGC 2 cut(s) 875, 909
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 909
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 2 cut(s) 379, 404
BfuAI ACCTGC 1 cut(s) 478
BfuI GTATCC 1 cut(s) 350
BisI GCNGC 8 cut(s) 158, 338, 504, 548, 739, 749, 909, 912
BlsI GCNGC 8 cut(s) 159, 339, 505, 549, 740, 750, 910, 913
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 1 cut(s) 174
BmiI GGNNCC 4 cut(s) 97, 108, 551, 783
BmrFI CCNGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 167, 181, 768
BpiI GAAGAC 1 cut(s) 285
BsaHI GRCGYC 1 cut(s) 550
BsaWI WCCGGW 2 cut(s) 395, 804
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 804
BseBI CCWGG 1 cut(s) 174
BseGI GGATG 5 cut(s) 23, 182, 355, 452, 838
BseMI GCAATG 1 cut(s) 636
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 6 cut(s) 169, 324, 725, 760, 895, 923
Bsh1236I CGCG 2 cut(s) 267, 461
Bsh1285I CGRYCG 1 cut(s) 668
BshFI GGCC 1 cut(s) 313
BshNI GGYRCC 2 cut(s) 106, 549
BsiEI CGRYCG 1 cut(s) 668
BsiSI CCGG 3 cut(s) 396, 581, 805
BslFI GGGAC 1 cut(s) 711
BsmFI GGGAC 1 cut(s) 711
BsnI GGCC 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 98, 454
Bsp13I TCCGGA 1 cut(s) 804
Bsp143I GATC 5 cut(s) 169, 526, 665, 781, 922
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 3 cut(s) 504, 547, 641
BspANI GGCC 1 cut(s) 313
BspEI TCCGGA 1 cut(s) 804
BspFNI CGCG 2 cut(s) 267, 461
BspLI GGNNCC 4 cut(s) 97, 108, 551, 783
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 1 cut(s) 478
BspPI GGATC 3 cut(s) 164, 776, 789
BspQI GCTCTTC 1 cut(s) 903
BspT107I GGYRCC 2 cut(s) 106, 549
BspTI CTTAAG 2 cut(s) 379, 404
BsrBI CCGCTC 1 cut(s) 547
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 1 cut(s) 147
BssMI GATC 5 cut(s) 169, 526, 665, 781, 922
BssNAI GTATAC 1 cut(s) 393
BssNI GRCGYC 1 cut(s) 550
BssSI CACGAG 1 cut(s) 602
Bst1107I GTATAC 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 903
BstACI GRCGYC 1 cut(s) 550
BstAFI CTTAAG 2 cut(s) 379, 404
BstC8I GCNNGC 2 cut(s) 269, 311
BstDEI CTNAG 1 cut(s) 140
BstF5I GGATG 5 cut(s) 23, 182, 355, 452, 838
BstFNI CGCG 2 cut(s) 267, 461
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 2 cut(s) 552, 748
BstKTI GATC 5 cut(s) 172, 529, 668, 784, 925
BstMBI GATC 5 cut(s) 169, 526, 665, 781, 922
BstMCI CGRYCG 1 cut(s) 668
BstMWI GCNNNNNNNGC 3 cut(s) 11, 277, 458
BstNI CCWGG 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 909
BstSLI GKGCMC 1 cut(s) 454
BstUI CGCG 2 cut(s) 267, 461
BstV1I GCAGC 6 cut(s) 169, 324, 725, 760, 895, 923
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BstZ17I GTATAC 1 cut(s) 393
BsuI GTATCC 1 cut(s) 350
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 5 cut(s) 23, 182, 355, 452, 838
BtuMI TCGCGA 1 cut(s) 267
BveI ACCTGC 1 cut(s) 478
Cac8I GCNNGC 2 cut(s) 269, 311
CfoI GCGC 2 cut(s) 552, 748
CseI GACGC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 319, 499
CviAII CATG 1 cut(s) 455
CviQI GTAC 2 cut(s) 319, 499
DdeI CTNAG 1 cut(s) 140
DinI GGCGCC 1 cut(s) 551
DpnI GATC 5 cut(s) 171, 528, 667, 783, 924
DpnII GATC 5 cut(s) 169, 526, 665, 781, 922
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
Eco24I GRGCYC 1 cut(s) 98
Eco32I GATATC 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 172
EcoRV GATATC 1 cut(s) 682
EcoT38I GRGCYC 1 cut(s) 98
EgeI GGCGCC 1 cut(s) 551
EheI GGCGCC 1 cut(s) 551
FaeI CATG 1 cut(s) 458
FaqI GGGAC 1 cut(s) 711
FatI CATG 1 cut(s) 454
FblI GTMKAC 2 cut(s) 392, 466
Fnu4HI GCNGC 8 cut(s) 158, 338, 504, 548, 739, 749, 909, 912
FokI GGATG 5 cut(s) 10, 189, 362, 459, 845
FriOI GRGCYC 1 cut(s) 98
Fsp4HI GCNGC 8 cut(s) 158, 338, 504, 548, 739, 749, 909, 912
GlaI GCGC 2 cut(s) 551, 747
GluI GCNGC 8 cut(s) 158, 338, 504, 548, 739, 749, 909, 912
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 1 cut(s) 313
HapII CCGG 3 cut(s) 396, 581, 805
HgaI GACGC 1 cut(s) 467
HhaI GCGC 2 cut(s) 552, 748
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 1 cut(s) 458
Hin6I GCGC 2 cut(s) 550, 746
HinP1I GCGC 2 cut(s) 550, 746
HincII GTYRAC 1 cut(s) 429
HindII GTYRAC 1 cut(s) 429
HindIII AAGCTT 2 cut(s) 137, 401
HinfI GANTC 7 cut(s) 101, 214, 598, 628, 801, 827, 866
HpaII CCGG 3 cut(s) 396, 581, 805
HphI GGTGA 2 cut(s) 39, 221
Hpy166II GTNNAC 5 cut(s) 229, 393, 429, 439, 467
Hpy188I TCNGA 4 cut(s) 100, 417, 670, 832
Hpy188III TCNNGA 5 cut(s) 116, 266, 595, 704, 805
Hpy8I GTNNAC 5 cut(s) 229, 393, 429, 439, 467
Hpy99I CGWCG 1 cut(s) 887
HpyAV CCTTC 6 cut(s) 295, 299, 376, 420, 563, 688
HpyCH4IV ACGT 3 cut(s) 41, 81, 431
HpyCH4V TGCA 3 cut(s) 741, 759, 911
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 277, 458
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 3 cut(s) 41, 81, 431
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 1 cut(s) 458
HspAI GCGC 2 cut(s) 550, 746
KasI GGCGCC 1 cut(s) 549
Kpn2I TCCGGA 1 cut(s) 804
Kzo9I GATC 5 cut(s) 169, 526, 665, 781, 922
LguI GCTCTTC 1 cut(s) 903
LmnI GCTCC 2 cut(s) 101, 154
Lsp1109I GCAGC 6 cut(s) 169, 324, 725, 760, 895, 923
LweI GCATC 3 cut(s) 167, 181, 768
MaeII ACGT 3 cut(s) 41, 81, 431
MalI GATC 5 cut(s) 171, 528, 667, 783, 924
MbiI CCGCTC 1 cut(s) 547
MboI GATC 5 cut(s) 169, 526, 665, 781, 922
MboII GAAGA 4 cut(s) 285, 725, 730, 890
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 2 cut(s) 98, 454
MluCI AATT 3 cut(s) 478, 491, 559
MluI ACGCGT 1 cut(s) 459
Mly113I GGCGCC 1 cut(s) 550
MlyI GAGTC 2 cut(s) 821, 875
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 9 cut(s) 37, 55, 86, 202, 243, 415, 637, 703, 890
MroI TCCGGA 1 cut(s) 804
MseI TTAA 5 cut(s) 380, 405, 477, 558, 860
MspA1I CMGCKG 2 cut(s) 14, 160
MspCI CTTAAG 2 cut(s) 379, 404
MspI CCGG 3 cut(s) 396, 581, 805
MspR9I CCNGG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 2 cut(s) 267, 461
MwoI GCNNNNNNNGC 3 cut(s) 11, 277, 458
NarI GGCGCC 1 cut(s) 550
NdeII GATC 5 cut(s) 169, 526, 665, 781, 922
NlaIII CATG 1 cut(s) 458
NlaIV GGNNCC 4 cut(s) 97, 108, 551, 783
NruI TCGCGA 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 903
PcsI WCGNNNNNNNCGW 1 cut(s) 507
PfeI GAWTC 5 cut(s) 101, 214, 598, 628, 801
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 8 cut(s) 159, 339, 505, 549, 740, 750, 910, 913
Ple19I CGATCG 1 cut(s) 668
PleI GAGTC 2 cut(s) 821, 874
PluTI GGCGCC 1 cut(s) 553
PpsI GAGTC 2 cut(s) 821, 874
PshBI ATTAAT 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
PspN4I GGNNCC 4 cut(s) 97, 108, 551, 783
PstI CTGCAG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 781
PvuI CGATCG 1 cut(s) 668
PvuII CAGCTG 2 cut(s) 14, 160
RruI TCGCGA 1 cut(s) 267
RsaI GTAC 2 cut(s) 320, 500
RsaNI GTAC 2 cut(s) 319, 499
SapI GCTCTTC 1 cut(s) 903
SaqAI TTAA 5 cut(s) 380, 405, 477, 558, 860
SatI GCNGC 8 cut(s) 158, 338, 504, 548, 739, 749, 909, 912
Sau3AI GATC 5 cut(s) 169, 526, 665, 781, 922
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 2 cut(s) 821, 875
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 98, 454
SfaNI GCATC 3 cut(s) 167, 181, 768
SfcI CTRYAG 1 cut(s) 909
SfoI GGCGCC 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 379, 404
SmoI CTYRAG 2 cut(s) 379, 404
Sse9I AATT 3 cut(s) 478, 491, 559
SsiI CCGC 3 cut(s) 504, 547, 641
SspDI GGCGCC 1 cut(s) 549
StyD4I CCNGG 1 cut(s) 172
TaiI ACGT 3 cut(s) 44, 84, 434
TaqI TCGA 5 cut(s) 68, 248, 536, 543, 882
TasI AATT 3 cut(s) 478, 491, 559
TatI WGTACW 1 cut(s) 318
TauI GCSGC 2 cut(s) 506, 550
TfiI GAWTC 5 cut(s) 101, 214, 598, 628, 801
Tru1I TTAA 5 cut(s) 380, 405, 477, 558, 860
Tru9I TTAA 5 cut(s) 380, 405, 477, 558, 860
TseI GCWGC 6 cut(s) 157, 337, 738, 748, 908, 911
TspDTI ATGAA 1 cut(s) 890
TspGWI ACGGA 2 cut(s) 499, 878
Vha464I CTTAAG 2 cut(s) 379, 404
VspI ATTAAT 1 cut(s) 477
XmiI GTMKAC 2 cut(s) 392, 466
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.