Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8414461.1

Orthogroup ID

OG0000570

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 932

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8414461.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 269 bp

tgcaaatgggacggcgcttcttcccccattgctcagaagttcttgataagtttctggatgatgagatggatatggctgattacttccttgagaaaggaactcctgaagagcagaaaaacaagaagatgcgcttcttggagcttaaagatgatgtacagaaagcattttgcagggatgtggctgaaaaacgggggccagatttgacggcctcatcatcatcctcatcttctccgaaggagggtgttaatcgtaaggttaggaaaaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank_2 BTB DUF3420 NPR1_like_C

Protein Analysis

88

Amino Acids

10.25

Weight (kDa)

8.62

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45110 AT5G45110
fragaria_vesca	FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica	MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica	Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis	pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis	RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata	RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora	Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa	Rorug02G0432800 Rorug05G0051600
rosa_samantha	Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana	Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	238
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
AoxI	GGCC	2 cut(s)	193, 206
AspLEI	GCGC	2 cut(s)	17, 131
AspS9I	GGNCC	1 cut(s)	193
BccI	CCATC	1 cut(s)	60
BceAI	ACGGC	2 cut(s)	28, 221
BfoI	RGCGCY	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	194
BmsI	GCATC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	27
BseGI	GGATG	3 cut(s)	63, 180, 217
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	47
BshFI	GGCC	2 cut(s)	195, 208
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	195, 208
Bsp1407I	TGTACA	1 cut(s)	153
BspANI	GGCC	2 cut(s)	195, 208
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	194
BspQI	GCTCTTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	27
BsrGI	TGTACA	1 cut(s)	153
Bst6I	CTCTTC	1 cut(s)	101
BstAUI	TGTACA	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	63, 180, 217
BstH2I	RGCGCY	1 cut(s)	18
BstHHI	GCGC	2 cut(s)	17, 131
BsuRI	GGCC	2 cut(s)	195, 208
BtsCI	GGATG	3 cut(s)	63, 180, 217
CfoI	GCGC	2 cut(s)	17, 131
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	5 cut(s)	76, 141, 181, 195, 208
CviKI_1	RGCY	5 cut(s)	76, 141, 181, 195, 208
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	125
FaiI	YATR	1 cut(s)	73
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FaqI	GGGAC	1 cut(s)	23
FokI	GGATG	3 cut(s)	70, 187, 204
GlaI	GCGC	2 cut(s)	16, 130
HaeII	RGCGCY	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	195, 208
HhaI	GCGC	2 cut(s)	17, 131
Hin6I	GCGC	2 cut(s)	15, 129
HinP1I	GCGC	2 cut(s)	15, 129
Hpy188I	TCNGA	2 cut(s)	36, 233
Hpy188III	TCNNGA	3 cut(s)	43, 55, 103
HpyAV	CCTTC	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	3, 170
HpyF3I	CTNAG	1 cut(s)	33
HspAI	GCGC	2 cut(s)	15, 129
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	1 cut(s)	138
LpnPI	CCDG	4 cut(s)	40, 116, 156, 209
LweI	GCATC	1 cut(s)	116
MboII	GAAGA	4 cut(s)	12, 118, 135, 218
MnlI	CCTC	3 cut(s)	219, 231, 231
MseI	TTAA	2 cut(s)	143, 245
NlaIV	GGNNCC	1 cut(s)	194
PciSI	GCTCTTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	194
PspPI	GGNCC	1 cut(s)	193
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	143, 245
Sau96I	GGNCC	1 cut(s)	193
SetI	ASST	3 cut(s)	143, 257, 268
SfaNI	GCATC	1 cut(s)	116
SgeI	CNNG	9 cut(s)	55, 67, 100, 115, 132, 147, 183, 202, 208
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
TatI	WGTACW	1 cut(s)	153
Tru1I	TTAA	2 cut(s)	143, 245
Tru9I	TTAA	2 cut(s)	143, 245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.