Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000570

Physical Location & Seq

Genomic Coordinates Forward (+)

17097792 .. 17099824

Gene Structure 2033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCGAAGAAATTCAATGGCTGTGAACATGTCAAACACATCACAGGTGATAGCTGATGATTTGAATGTGAGGCTGGACTATTTTGAAAATAGAGTGGCATTTGCACGGTTGTTGTTTCCTGCTGAAGCCAAGCTTGCTATGGAAATGGCGGATCATCCAACATCAGGGTACACTGGCCTTTTAGCATCAAAAGGATCTAGTGGGAACTTACGAGAGGTCGATTTGAATGAAACACCCTCTGGACGATCTAAAAGACTCCAAGAAAAATTGCAAGCGCTAATTAAAACAGTGCAAATGGGACGGCGCTTCTTCCCCCATTGCTCAGAAGTTCTTGATAAGTTTCTGGATGATGAGATGGATATGGCTGATTACTTCCTTGAGAAAGGAACTCCTGAAGAGCAGAAAAACAAGAAGACGCGCTTCTTGGAGCTTAAAGATGATATACATAAGGCATTTTGCAGGGATGTGGCTGAAGACCAGGGTCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank_2 BTB DUF3420 NPR1_like_C

Protein Analysis

163

Amino Acids

18.66

Weight (kDa)

5.68

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPR1_like_C	PF12313	1 - 158	3.8e-58	NPR1/NIM1 like defence protein C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45110 AT5G45110
fragaria_vesca	FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica	MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica	Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis	pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis	RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata	RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora	Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa	Rorug02G0432800 Rorug05G0051600
rosa_samantha	Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana	Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	418
AciI	CCGC	1 cut(s)	149
AclWI	GGATC	2 cut(s)	159, 202
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	3 cut(s)	144, 414, 492
AfaI	GTAC	1 cut(s)	170
AfeI	AGCGCT	1 cut(s)	276
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	15, 64, 86, 226
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	3 cut(s)	53, 133, 430
AluI	AGCT	3 cut(s)	53, 133, 430
AlwI	GGATC	2 cut(s)	159, 202
Aor51HI	AGCGCT	1 cut(s)	276
AoxI	GGCC	1 cut(s)	175
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	10
AspLEI	GCGC	3 cut(s)	277, 306, 420
AsuHPI	GGTGA	1 cut(s)	58
BbsI	GAAGAC	2 cut(s)	419, 480
BccI	CCATC	1 cut(s)	349
BceAI	ACGGC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	479
BfaI	CTAG	1 cut(s)	198
BfoI	RGCGCY	2 cut(s)	278, 307
Bme1390I	CCNGG	1 cut(s)	479
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	194
BoxI	GACNNNNGTC	1 cut(s)	480
BpiI	GAAGAC	2 cut(s)	419, 480
BpuEI	CTTGAG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	478
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	178
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	1 cut(s)	478
BseGI	GGATG	3 cut(s)	154, 352, 469
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	336
BseNI	ACTGG	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	177
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	151, 194, 245
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	418
BspPI	GGATC	2 cut(s)	159, 202
BspQI	GCTCTTC	1 cut(s)	390
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	478
BssMI	GATC	3 cut(s)	151, 194, 245
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	2 cut(s)	108, 289
Bst6I	CTCTTC	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	135, 273
BstDEI	CTNAG	1 cut(s)	322
BstF5I	GGATG	3 cut(s)	154, 352, 469
BstFNI	CGCG	1 cut(s)	418
BstH2I	RGCGCY	2 cut(s)	278, 307
BstHHI	GCGC	3 cut(s)	277, 306, 420
BstKTI	GATC	3 cut(s)	154, 197, 248
BstMBI	GATC	3 cut(s)	151, 194, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	31
BstPAI	GACNNNNGTC	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	477
BstUI	CGCG	1 cut(s)	418
BstV2I	GAAGAC	2 cut(s)	419, 480
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	177
BtsCI	GGATG	3 cut(s)	154, 352, 469
BtsIMutI	CAGTG	2 cut(s)	171, 294
Cac8I	GCNNGC	2 cut(s)	135, 273
CfoI	GCGC	3 cut(s)	277, 306, 420
CseI	GACGC	1 cut(s)	424
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	28
CviJI	RGCY	9 cut(s)	20, 53, 73, 128, 133, 177, 365, 430, 470
CviKI_1	RGCY	9 cut(s)	20, 53, 73, 128, 133, 177, 365, 430, 470
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	322
DpnI	GATC	3 cut(s)	153, 196, 247
DpnII	GATC	3 cut(s)	151, 194, 245
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	1 cut(s)	164
Eco47III	AGCGCT	1 cut(s)	276
Eco57I	CTGAAG	3 cut(s)	144, 414, 492
EcoRII	CCWGG	1 cut(s)	477
FaeI	CATG	1 cut(s)	31
FaiI	YATR	5 cut(s)	29, 140, 362, 443, 447
FalI	AAGNNNNNCTT	4 cut(s)	117, 149, 404, 436
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	27
FokI	GGATG	3 cut(s)	141, 359, 476
FspBI	CTAG	1 cut(s)	198
GlaI	GCGC	3 cut(s)	276, 305, 419
HaeII	RGCGCY	2 cut(s)	278, 307
HaeIII	GGCC	1 cut(s)	177
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	3 cut(s)	277, 306, 420
Hin1II	CATG	1 cut(s)	31
Hin6I	GCGC	3 cut(s)	275, 304, 418
HinP1I	GCGC	3 cut(s)	275, 304, 418
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	255
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	2 cut(s)	25, 171
Hpy188I	TCNGA	1 cut(s)	325
Hpy188III	TCNNGA	4 cut(s)	240, 332, 344, 392
Hpy8I	GTNNAC	2 cut(s)	25, 171
HpyCH4III	ACNGT	2 cut(s)	108, 289
HpyCH4V	TGCA	4 cut(s)	104, 271, 292, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	1 cut(s)	322
Hsp92II	CATG	1 cut(s)	31
HspAI	GCGC	3 cut(s)	275, 304, 418
Kzo9I	GATC	3 cut(s)	151, 194, 245
LguI	GCTCTTC	1 cut(s)	390
LmnI	GCTCC	1 cut(s)	427
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	198
MalI	GATC	3 cut(s)	153, 196, 247
MboI	GATC	3 cut(s)	151, 194, 245
MboII	GAAGA	5 cut(s)	18, 301, 407, 424, 485
MflI	RGATCY	1 cut(s)	194
MluCI	AATT	3 cut(s)	10, 266, 279
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	63, 208, 247
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	2 cut(s)	282, 432
MspR9I	CCNGG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	479
MvnI	CGCG	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	3 cut(s)	151, 194, 245
NlaIII	CATG	1 cut(s)	31
NspI	RCATGY	1 cut(s)	31
PciI	ACATGT	1 cut(s)	27
PciSI	GCTCTTC	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
PscI	ACATGT	1 cut(s)	27
PshAI	GACNNNNGTC	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	477
PspGI	CCWGG	1 cut(s)	477
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	282, 432
Sau3AI	GATC	3 cut(s)	151, 194, 245
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	479
SetI	ASST	5 cut(s)	48, 55, 135, 219, 432
SfaNI	GCATC	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	10, 266, 279
SsiI	CCGC	1 cut(s)	149
SspMI	CTAG	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	477
TaaI	ACNGT	2 cut(s)	108, 289
TaqI	TCGA	1 cut(s)	219
TasI	AATT	3 cut(s)	10, 266, 279
Tru1I	TTAA	2 cut(s)	282, 432
Tru9I	TTAA	2 cut(s)	282, 432
TscAI	CASTG	2 cut(s)	178, 294
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	178, 294
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	1 cut(s)	31
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.