Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005366.1

Orthogroup ID

OG0000570

Physical Location & Seq

Genomic Coordinates Reverse (-)

87900 .. 88515

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005366.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atggctgtgaacatgtcaaacacatcacaggtgatagctgatgatttgaatgtgaggctggactattttgaaaacagagtggcatttgcacggttgttgtttcctgcggaagccaagcttgctatggaaatggcggatcatccaacatcagagtctagtgggaacttacgagaggtcgaattgaatgaaacaccctctgtacgatccgaaagactccacgaaaaattgcatgcgctaattaaaacaggtatggtcattttaccactcacaggtatctcaaactgtactctaaaactttgtgtgatgtgcaagtcccatcgacatgtgttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank_2 BTB DUF3420 NPR1_like_C

Protein Analysis

110

Amino Acids

12.32

Weight (kDa)

6.5

Isoelectric Point (pI)

32.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45110 AT5G45110
fragaria_vesca	FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica	MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica	Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis	pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis	RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata	RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora	Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa	Rorug02G0432800 Rorug05G0051600
rosa_samantha	Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana	Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	107, 134
AclWI	GGATC	2 cut(s)	144, 198
AfaI	GTAC	2 cut(s)	201, 286
AfiI	CCNNNNNNNGG	1 cut(s)	269
AflIII	ACRYGT	2 cut(s)	12, 322
AgsI	TTSAA	3 cut(s)	49, 71, 184
AluBI	AGCT	2 cut(s)	38, 118
AluI	AGCT	2 cut(s)	38, 118
AlwI	GGATC	2 cut(s)	144, 198
AspLEI	GCGC	1 cut(s)	235
AsuHPI	GGTGA	1 cut(s)	43
BccI	CCATC	1 cut(s)	324
BfaI	CTAG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	136, 203
BspACI	CCGC	2 cut(s)	107, 134
BspPI	GGATC	2 cut(s)	144, 198
BssMI	GATC	2 cut(s)	136, 203
Bst4CI	ACNGT	2 cut(s)	93, 284
BstC8I	GCNNGC	2 cut(s)	120, 231
BstF5I	GGATG	1 cut(s)	139
BstHHI	GCGC	1 cut(s)	235
BstKTI	GATC	2 cut(s)	139, 206
BstMBI	GATC	2 cut(s)	136, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNSI	RCATGY	3 cut(s)	16, 233, 326
BtsCI	GGATG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	120, 231
CfoI	GCGC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	200, 285
CviAII	CATG	3 cut(s)	13, 230, 323
CviJI	RGCY	5 cut(s)	5, 38, 58, 113, 118
CviKI_1	RGCY	5 cut(s)	5, 38, 58, 113, 118
CviQI	GTAC	2 cut(s)	200, 285
DpnI	GATC	2 cut(s)	138, 205
DpnII	GATC	2 cut(s)	136, 203
EciI	GGCGGA	1 cut(s)	149
FaeI	CATG	3 cut(s)	16, 233, 326
FaiI	YATR	6 cut(s)	14, 125, 231, 251, 324, 331
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	3 cut(s)	12, 229, 322
FokI	GGATG	1 cut(s)	126
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	235
Hin1II	CATG	3 cut(s)	16, 233, 326
Hin6I	GCGC	1 cut(s)	233
HinP1I	GCGC	1 cut(s)	233
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	152, 213
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	2 cut(s)	151, 208
Hpy8I	GTNNAC	1 cut(s)	10
HpyCH4III	ACNGT	2 cut(s)	93, 284
HpyCH4V	TGCA	3 cut(s)	89, 229, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
Hsp92II	CATG	3 cut(s)	16, 233, 326
HspAI	GCGC	1 cut(s)	233
Kzo9I	GATC	2 cut(s)	136, 203
LpnPI	CCDG	5 cut(s)	14, 44, 117, 231, 255
MaeI	CTAG	1 cut(s)	156
MalI	GATC	2 cut(s)	138, 205
MboI	GATC	2 cut(s)	136, 203
MluCI	AATT	3 cut(s)	179, 224, 237
MlyI	GAGTC	2 cut(s)	161, 207
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	3 cut(s)	48, 166, 205
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	136, 203
NlaIII	CATG	3 cut(s)	16, 233, 326
NspI	RCATGY	3 cut(s)	16, 233, 326
PaeI	GCATGC	1 cut(s)	233
PciI	ACATGT	2 cut(s)	12, 322
PleI	GAGTC	2 cut(s)	160, 207
PpsI	GAGTC	2 cut(s)	160, 207
PscI	ACATGT	2 cut(s)	12, 322
RsaI	GTAC	2 cut(s)	201, 286
RsaNI	GTAC	2 cut(s)	200, 285
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	136, 203
SchI	GAGTC	2 cut(s)	161, 207
SetI	ASST	6 cut(s)	33, 40, 120, 177, 250, 274
SmiMI	CAYNNNNRTG	1 cut(s)	321
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	3 cut(s)	179, 224, 237
SsiI	CCGC	2 cut(s)	107, 134
SspMI	CTAG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	93, 284
TaqI	TCGA	2 cut(s)	177, 319
TasI	AATT	3 cut(s)	179, 224, 237
TatI	WGTACW	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspDTI	ATGAA	1 cut(s)	201
XceI	RCATGY	3 cut(s)	16, 233, 326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.