MD10G1236700.v1.1

Regulatory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000570
Physical Location & Seq
Forward (+)
33314867 .. 33318366
3500 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1236700.v1.1.491

Sequence Viewer

Length: 1761 bp
ATGGCTCATTCAGCCGAACCATCATCCTCTCTGAGCTTTACTTCATCACCCCATTTATCAAATGGTTCAATAAGCCACAACTTATCGTGTTCTGGCTCCGAATCGGTGCCAAGTCTTGAAGTCATCAGTTTGTCCAAGCTTAGCTCTAGTTTGGAGCAGTTGTTGATTGATCCTGGCTGTGACTATAGTGATGCTGATATCGTAGTTGAGGGGATTCCTGTTGGTGTACACCGATGTATATTGGCTTCTAGGAGTGGATTTTTTCGCGAGCTATTCAAGCGAGAAAAGGGGTCTTCTGGAAAGGAAGACAGGCCAAAGTACTGTATGAGTGATTTTCTGCCTTATGGCGATGTTGGATATGAAGCCTTCTTGGTTTTCTTAAGCTATGTGTATACTGGAAAGCTTAAGCCTTCTCCCGTGGAGGTGTCAACCTGCGTTCACAATGTATGTGCCCATGACGCATGTAGACCTGCTATCAATTTCGTTGTGGAATTGATGTACGCCGCTTCCATTTTCCAAATGCCCGATCTGGTTTCGATATTCGAGCGGCGCCTTCTTAATTTTGTTGGGAAAGCTCTGTCAGACAATGTTGTCCCAATTCTCTTGGTTGCCTTCCATTGTCAGTTGAATCAGCTCATCGATCAGTGTGTAGATAGAGTGGCACGATCAGATATTGATGACATCTCTCTTGAGAAGGGACTTCCTGATGAGGTTGTGAAGAAAATCAAAAGTCTTCGCCGCAATTATCAGCAGGATTCTGACCCAAACTTGCCACCTGCCGATCCCTTGCATGAAAAGAGAATCCGAAGAATACATAAGGCTTTGGACTCGGATGATGTCGAGCTTGTGAAACTTCTTTTAACGGAGTCTAATATAACCTTAGATGAAGCAAATGCTCTCCATTATGCTGCAGCTTACTGCGATCCTAAGGTTGTGACCGAAGTGCTTGCTCTGGGCCTCGCTGATGTTAACCTCCGGAATTCTAGGGGTTATACAGTGCTTCACATTGCTGTGATGCGCAAAGAGCCATCAATTATTGTATTGCTACTGACTAAAGGAGCTCGTGCATCGGAGCTGACATCAGATGGTCAGAGTGCTGTTAGTATTTGCAGGAGGTTGACGAGACCAAAGGATTACCATTCAAAAACAGAGCAGGGGCAAGAAGCAAACAAAGACCGAATATGCATTGATGTTCTAGAGAGGGAAATGCGGCGGAATCCAATGGCTGGAGATGCATCTATATCTTCCCAAATAATGCCTGATGATCTGCACATGGAGTTGCTGAACCTGGAGAACAGAGTGGCATTGGCCCGATTGTTTTTCCCTGCGGAAGCCAAGCTAGCCATGGTCATTGCCCATGCGGAGACATCTGAGTTTGCTGCGCCATCATCATCGAAAGGATCAAGTGGGAATCTGATGGAGGTAGATTTAAACGAGACCCCCACCGTGCAGAACAAAAGACTTCATTCCAGGTTGGAAGCCCTTATGAAAACAGTCCGTTTGGGTAGATGCTACTTCCCTCATTGCTCAGAAGTCCTGGATAAGTTCATCGATGACGACCTCCCTCATTTGTTTTACCTCGAGCCTGGCTCCTCCGACGAGCAGAAGGTAAAGAGGAGGCGTTTCATGGAGCTCAAGGAGGAAGTACAAAAAGCATTTGACAAGGACAAGGCCGAGTGTAACCTCTCCGGATTGTCTTCATCGTCCTCCACGACATCTCCGGAAAAAATTGGTGCAAATCAGAAGGTTAGGGAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0042802 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022 GO:2000031 GO:2001023 GO:2001038
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 BTB DUF3420 NPR1_like_C

Protein Analysis

587

Amino Acids

65.08

Weight (kDa)

5.84

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BTB PF00651 61 - 185 2e-10 BTB/POZ domain
DUF3420 PF11900 224 - 272 2.5e-13 Domain of unknown function (DUF3420)
Ank_2 PF12796 272 - 355 1.2e-09 Ankyrin repeats (3 copies)
NPR1_like_C PF12313 371 - 572 7.1e-88 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45110 AT5G45110
fragaria_vesca FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa Rorug02G0432800 Rorug05G0051600
rosa_samantha Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 784
AasI GACNNNNNNGTC 1 cut(s) 590
Acc16I TGCGCA 1 cut(s) 1019
Acc36I ACCTGC 3 cut(s) 440, 478, 784
AccB1I GGYRCC 2 cut(s) 106, 549
AccB7I CCANNNNNTGG 1 cut(s) 1226
AccBSI CCGCTC 1 cut(s) 547
AccI GTMKAC 2 cut(s) 392, 466
AccII CGCG 1 cut(s) 267
AccIII TCCGGA 3 cut(s) 975, 1688, 1720
AciI CCGC 7 cut(s) 504, 547, 739, 1210, 1213, 1328, 1361
AclWI GGATC 4 cut(s) 164, 776, 917, 1408
AcsI RAATTY 1 cut(s) 979
AcyI GRCGYC 1 cut(s) 550
AfaI GTAC 4 cut(s) 228, 320, 500, 1647
AfiI CCNNNNNNNGG 1 cut(s) 1226
AflII CTTAAG 2 cut(s) 379, 404
AgsI TTSAA 5 cut(s) 69, 119, 277, 628, 1143
AjnI CCWGG 5 cut(s) 172, 1287, 1469, 1536, 1585
Alw21I GWGCWC 2 cut(s) 1063, 1635
Alw26I GTCTC 3 cut(s) 1117, 1358, 1430
AlwI GGATC 4 cut(s) 164, 776, 917, 1408
Ama87I CYCGRG 1 cut(s) 1580
Aor13HI TCCGGA 3 cut(s) 975, 1688, 1720
AoxI GGCC 4 cut(s) 311, 955, 1308, 1671
ApeKI GCWGC 3 cut(s) 908, 911, 1379
ApoI RAATTY 1 cut(s) 979
AspLEI GCGC 3 cut(s) 552, 1020, 1384
AspS9I GGNCC 2 cut(s) 955, 1309
AsuHPI GGTGA 1 cut(s) 39
AsuNHI GCTAGC 1 cut(s) 1339
AvaI CYCGRG 1 cut(s) 1580
AxyI CCTNAGG 1 cut(s) 927
BaeGI GKGCMC 1 cut(s) 454
BanI GGYRCC 2 cut(s) 106, 549
BanII GRGCYC 2 cut(s) 1063, 1635
BarI GAAGNNNNNNTAC 2 cut(s) 229, 261
BauI CACGAG 1 cut(s) 1062
BbsI GAAGAC 4 cut(s) 285, 312, 725, 1689
Bbv12I GWGCWC 2 cut(s) 1063, 1635
BbvI GCAGC 3 cut(s) 895, 923, 1366
BccI CCATC 5 cut(s) 28, 1036, 1079, 1393, 1411
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BciT130I CCWGG 5 cut(s) 174, 1289, 1471, 1538, 1587
BcoDI GTCTC 3 cut(s) 1117, 1358, 1430
BfaI CTAG 5 cut(s) 147, 249, 984, 1196, 1340
BfmI CTRYAG 2 cut(s) 184, 909
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 2 cut(s) 379, 404
BfuAI ACCTGC 3 cut(s) 440, 478, 784
BisI GCNGC 7 cut(s) 504, 548, 739, 909, 912, 1211, 1380
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 7 cut(s) 505, 549, 740, 910, 913, 1212, 1381
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 5 cut(s) 174, 1289, 1471, 1538, 1587
BmeT110I CYCGRG 1 cut(s) 1580
BmgT120I GGNCC 2 cut(s) 955, 1309
BmiI GGNNCC 5 cut(s) 97, 108, 551, 1591, 1755
BmrFI CCNGG 5 cut(s) 174, 1289, 1471, 1538, 1587
BmsI GCATC 6 cut(s) 181, 1005, 1076, 1222, 1244, 1499
BmtI GCTAGC 1 cut(s) 1343
BpiI GAAGAC 4 cut(s) 285, 312, 725, 1689
BplI GAGNNNNNCTC 2 cut(s) 1574, 1606
BpmI CTGGAG 2 cut(s) 1248, 1310
Bpu1102I GCTNAGC 1 cut(s) 140
BpuEI CTTGAG 2 cut(s) 710, 1619
Bsa29I ATCGAT 2 cut(s) 639, 1551
BsaHI GRCGYC 1 cut(s) 550
BsaI GGTCTC 2 cut(s) 1117, 1430
BsaJI CCNNGG 2 cut(s) 417, 1344
BsaWI WCCGGW 3 cut(s) 975, 1688, 1720
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 1702, 1732
Bsc4I CCNNNNNNNGG 1 cut(s) 1226
Bse1I ACTGG 1 cut(s) 400
Bse21I CCTNAGG 1 cut(s) 927
Bse3DI GCAATG 3 cut(s) 1005, 1350, 1522
BseAI TCCGGA 3 cut(s) 975, 1688, 1720
BseBI CCWGG 5 cut(s) 174, 1289, 1471, 1538, 1587
BseCI ATCGAT 2 cut(s) 639, 1551
BseDI CCNNGG 2 cut(s) 417, 1344
BseGI GGATG 2 cut(s) 23, 838
BseLI CCNNNNNNNGG 1 cut(s) 1226
BseMI GCAATG 3 cut(s) 1005, 1350, 1522
BseMII CTCAG 3 cut(s) 23, 1362, 1542
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 2 cut(s) 1582, 1630
BseSI GKGCMC 1 cut(s) 454
BseXI GCAGC 3 cut(s) 895, 923, 1366
BsgI GTGCAG 2 cut(s) 1253, 1469
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 4 cut(s) 313, 957, 1310, 1673
BshNI GGYRCC 2 cut(s) 106, 549
BshVI ATCGAT 2 cut(s) 639, 1551
BsiHKAI GWGCWC 2 cut(s) 1063, 1635
BsiHKCI CYCGRG 1 cut(s) 1580
BsiSI CCGG 3 cut(s) 976, 1689, 1721
BslFI GGGAC 2 cut(s) 578, 711
BslI CCNNNNNNNGG 1 cut(s) 1226
BsmAI GTCTC 3 cut(s) 1117, 1358, 1430
BsmFI GGGAC 2 cut(s) 578, 711
BsnI GGCC 4 cut(s) 313, 957, 1310, 1673
Bso31I GGTCTC 2 cut(s) 1117, 1430
BsoBI CYCGRG 1 cut(s) 1580
Bsp1286I GDGCHC 3 cut(s) 454, 1063, 1635
Bsp13I TCCGGA 3 cut(s) 975, 1688, 1720
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 8 cut(s) 169, 526, 640, 665, 781, 922, 1264, 1400
Bsp1720I GCTNAGC 1 cut(s) 140
Bsp19I CCATGG 1 cut(s) 1344
Bsp68I TCGCGA 1 cut(s) 267
BspACI CCGC 7 cut(s) 504, 547, 739, 1210, 1213, 1328, 1361
BspANI GGCC 4 cut(s) 313, 957, 1310, 1673
BspCNI CTCAG 3 cut(s) 24, 1363, 1541
BspDI ATCGAT 2 cut(s) 639, 1551
BspEI TCCGGA 3 cut(s) 975, 1688, 1720
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 5 cut(s) 97, 108, 551, 1591, 1755
BspMAI CTGCAG 1 cut(s) 913
BspMI ACCTGC 3 cut(s) 440, 478, 784
BspOI GCTAGC 1 cut(s) 1343
BspPI GGATC 4 cut(s) 164, 776, 917, 1408
BspT107I GGYRCC 2 cut(s) 106, 549
BspTI CTTAAG 2 cut(s) 379, 404
BspTNI GGTCTC 2 cut(s) 1117, 1430
BsrBI CCGCTC 1 cut(s) 547
BsrDI GCAATG 3 cut(s) 1005, 1350, 1522
BsrGI TGTACA 1 cut(s) 226
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 417, 1344
BssMI GATC 8 cut(s) 169, 526, 640, 665, 781, 922, 1264, 1400
BssNAI GTATAC 1 cut(s) 393
BssNI GRCGYC 1 cut(s) 550
BssSI CACGAG 1 cut(s) 1062
BssT1I CCWWGG 1 cut(s) 1344
Bst1107I GTATAC 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 1062
Bst2UI CCWGG 5 cut(s) 174, 1289, 1471, 1538, 1587
Bst4CI ACNGT 5 cut(s) 323, 997, 1447, 1495, 1758
BstACI GRCGYC 1 cut(s) 550
BstAFI CTTAAG 2 cut(s) 379, 404
BstAUI TGTACA 1 cut(s) 226
BstC8I GCNNGC 3 cut(s) 269, 948, 1341
BstDEI CTNAG 6 cut(s) 32, 140, 880, 927, 1371, 1528
BstDSI CCRYGG 2 cut(s) 417, 1344
BstF5I GGATG 2 cut(s) 23, 838
BstFNI CGCG 1 cut(s) 267
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 3 cut(s) 552, 1020, 1384
BstKTI GATC 8 cut(s) 172, 529, 643, 668, 784, 925, 1267, 1403
BstMAI GTCTC 3 cut(s) 1117, 1358, 1430
BstMBI GATC 8 cut(s) 169, 526, 640, 665, 781, 922, 1264, 1400
BstMWI GCNNNNNNNGC 6 cut(s) 11, 277, 458, 1024, 1232, 1340
BstNI CCWGG 5 cut(s) 174, 1289, 1471, 1538, 1587
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 5 cut(s) 172, 1287, 1469, 1536, 1585
BstSFI CTRYAG 2 cut(s) 184, 909
BstSLI GKGCMC 1 cut(s) 454
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 895, 923, 1366
BstV2I GAAGAC 4 cut(s) 285, 312, 725, 1689
BstZ17I GTATAC 1 cut(s) 393
Bsu15I ATCGAT 2 cut(s) 639, 1551
Bsu36I CCTNAGG 1 cut(s) 927
BsuRI GGCC 4 cut(s) 313, 957, 1310, 1673
BsuTUI ATCGAT 2 cut(s) 639, 1551
BtgI CCRYGG 2 cut(s) 417, 1344
BtgZI GCGATG 1 cut(s) 363
BtsCI GGATG 2 cut(s) 23, 838
BtsIMutI CAGTG 2 cut(s) 650, 1002
BtuMI TCGCGA 1 cut(s) 267
BveI ACCTGC 3 cut(s) 440, 478, 784
Cac8I GCNNGC 3 cut(s) 269, 948, 1341
CfoI GCGC 3 cut(s) 552, 1020, 1384
Cfr13I GGNCC 2 cut(s) 955, 1309
ClaI ATCGAT 2 cut(s) 639, 1551
CseI GACGC 1 cut(s) 467
Csp6I GTAC 4 cut(s) 227, 319, 499, 1646
CviAII CATG 7 cut(s) 455, 462, 791, 1273, 1345, 1358, 1627
CviQI GTAC 4 cut(s) 227, 319, 499, 1646
DdeI CTNAG 6 cut(s) 32, 140, 880, 927, 1371, 1528
DinI GGCGCC 1 cut(s) 551
DpnI GATC 8 cut(s) 171, 528, 642, 667, 783, 924, 1266, 1402
DpnII GATC 8 cut(s) 169, 526, 640, 665, 781, 922, 1264, 1400
DraI TTTAAA 1 cut(s) 1431
DrdI GACNNNNNNGTC 1 cut(s) 590
DseDI GACNNNNNNGTC 1 cut(s) 590
EciI GGCGGA 1 cut(s) 1228
Ecl136II GAGCTC 2 cut(s) 1061, 1633
Eco130I CCWWGG 1 cut(s) 1344
Eco24I GRGCYC 2 cut(s) 1063, 1635
Eco31I GGTCTC 2 cut(s) 1117, 1430
Eco32I GATATC 1 cut(s) 199
Eco53kI GAGCTC 2 cut(s) 1061, 1633
Eco81I CCTNAGG 1 cut(s) 927
Eco88I CYCGRG 1 cut(s) 1580
EcoICRI GAGCTC 2 cut(s) 1061, 1633
EcoRI GAATTC 1 cut(s) 979
EcoRII CCWGG 5 cut(s) 172, 1287, 1469, 1536, 1585
EcoRV GATATC 1 cut(s) 199
EcoT14I CCWWGG 1 cut(s) 1344
EcoT22I ATGCAT 2 cut(s) 1187, 1237
EcoT38I GRGCYC 2 cut(s) 1063, 1635
EgeI GGCGCC 1 cut(s) 551
EheI GGCGCC 1 cut(s) 551
ErhI CCWWGG 1 cut(s) 1344
FaeI CATG 7 cut(s) 458, 465, 794, 1276, 1348, 1361, 1630
FaqI GGGAC 2 cut(s) 578, 711
FatI CATG 7 cut(s) 454, 461, 790, 1272, 1344, 1357, 1626
FblI GTMKAC 2 cut(s) 392, 466
Fnu4HI GCNGC 7 cut(s) 504, 548, 739, 909, 912, 1211, 1380
FokI GGATG 2 cut(s) 10, 845
FriOI GRGCYC 2 cut(s) 1063, 1635
Fsp4HI GCNGC 7 cut(s) 504, 548, 739, 909, 912, 1211, 1380
FspBI CTAG 5 cut(s) 147, 249, 984, 1196, 1340
FspI TGCGCA 1 cut(s) 1019
GlaI GCGC 3 cut(s) 551, 1019, 1383
GluI GCNGC 7 cut(s) 504, 548, 739, 909, 912, 1211, 1380
GsuI CTGGAG 2 cut(s) 1248, 1310
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 4 cut(s) 313, 957, 1310, 1673
HapII CCGG 3 cut(s) 976, 1689, 1721
HgaI GACGC 1 cut(s) 467
HhaI GCGC 3 cut(s) 552, 1020, 1384
Hin1I GRCGYC 1 cut(s) 550
Hin1II CATG 7 cut(s) 458, 465, 794, 1276, 1348, 1361, 1630
Hin6I GCGC 3 cut(s) 550, 1018, 1382
HinP1I GCGC 3 cut(s) 550, 1018, 1382
HincII GTYRAC 3 cut(s) 429, 970, 1119
HindII GTYRAC 3 cut(s) 429, 970, 1119
HindIII AAGCTT 2 cut(s) 137, 401
HinfI GANTC 9 cut(s) 101, 214, 628, 755, 801, 827, 866, 1216, 1411
HpaI GTTAAC 1 cut(s) 970
HpaII CCGG 3 cut(s) 976, 1689, 1721
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 8 cut(s) 227, 229, 393, 429, 439, 467, 970, 1119
Hpy188III TCNNGA 9 cut(s) 116, 266, 297, 689, 704, 976, 1196, 1689, 1721
Hpy8I GTNNAC 8 cut(s) 227, 229, 393, 429, 439, 467, 970, 1119
Hpy99I CGWCG 1 cut(s) 1601
HpyAV CCTTC 7 cut(s) 376, 420, 563, 622, 688, 1600, 1738
HpyCH4III ACNGT 5 cut(s) 323, 997, 1447, 1495, 1758
HpyCH4V TGCA 9 cut(s) 790, 911, 1067, 1110, 1185, 1235, 1270, 1450, 1736
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 277, 458, 1024, 1232, 1340
HpyF3I CTNAG 6 cut(s) 32, 140, 880, 927, 1371, 1528
Hsp92I GRCGYC 1 cut(s) 550
Hsp92II CATG 7 cut(s) 458, 465, 794, 1276, 1348, 1361, 1630
HspAI GCGC 3 cut(s) 550, 1018, 1382
KasI GGCGCC 1 cut(s) 549
Kpn2I TCCGGA 3 cut(s) 975, 1688, 1720
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 8 cut(s) 169, 526, 640, 665, 781, 922, 1264, 1400
LmnI GCTCC 6 cut(s) 101, 154, 1058, 1072, 1595, 1630
Lsp1109I GCAGC 3 cut(s) 895, 923, 1366
LweI GCATC 6 cut(s) 181, 1005, 1076, 1222, 1244, 1499
MaeI CTAG 5 cut(s) 147, 249, 984, 1196, 1340
MaeIII GTNAC 3 cut(s) 179, 934, 1679
MalI GATC 8 cut(s) 171, 528, 642, 667, 783, 924, 1266, 1402
MbiI CCGCTC 1 cut(s) 547
MboI GATC 8 cut(s) 169, 526, 640, 665, 781, 922, 1264, 1400
MboII GAAGA 7 cut(s) 285, 317, 725, 730, 819, 1236, 1689
MhlI GDGCHC 3 cut(s) 454, 1063, 1635
MluCI AATT 8 cut(s) 478, 491, 559, 597, 742, 979, 1032, 1728
Mly113I GGCGCC 1 cut(s) 550
MlyI GAGTC 2 cut(s) 821, 875
MmeI TCCRAC 3 cut(s) 334, 1455, 1620
Mph1103I ATGCAT 2 cut(s) 1187, 1237
MroI TCCGGA 3 cut(s) 975, 1688, 1720
MseI TTAA 6 cut(s) 380, 405, 558, 860, 969, 1430
MslI CAYNNNNRTG 1 cut(s) 1010
MspCI CTTAAG 2 cut(s) 379, 404
MspI CCGG 3 cut(s) 976, 1689, 1721
MspR9I CCNGG 5 cut(s) 174, 1289, 1471, 1538, 1587
MvaI CCWGG 5 cut(s) 174, 1289, 1471, 1538, 1587
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 6 cut(s) 11, 277, 458, 1024, 1232, 1340
NarI GGCGCC 1 cut(s) 550
NcoI CCATGG 1 cut(s) 1344
NdeII GATC 8 cut(s) 169, 526, 640, 665, 781, 922, 1264, 1400
NheI GCTAGC 1 cut(s) 1339
NlaIII CATG 7 cut(s) 458, 465, 794, 1276, 1348, 1361, 1630
NlaIV GGNNCC 5 cut(s) 97, 108, 551, 1591, 1755
NmeAIII GCCGAG 1 cut(s) 1699
NmuCI GTSAC 2 cut(s) 179, 934
NruI TCGCGA 1 cut(s) 267
NsbI TGCGCA 1 cut(s) 1019
NsiI ATGCAT 2 cut(s) 1187, 1237
NspI RCATGY 1 cut(s) 465
PaeR7I CTCGAG 1 cut(s) 1580
PaqCI CACCTGC 1 cut(s) 784
PcsI WCGNNNNNNNCGW 1 cut(s) 1709
PfeI GAWTC 7 cut(s) 101, 214, 628, 755, 801, 1216, 1411
PflMI CCANNNNNTGG 1 cut(s) 1226
PfoI TCCNGGA 1 cut(s) 1536
PkrI GCNGC 7 cut(s) 505, 549, 740, 910, 913, 1212, 1381
PleI GAGTC 2 cut(s) 821, 874
PluTI GGCGCC 1 cut(s) 553
PpsI GAGTC 2 cut(s) 821, 874
Psp124BI GAGCTC 2 cut(s) 1063, 1635
Psp6I CCWGG 5 cut(s) 172, 1287, 1469, 1536, 1585
PspGI CCWGG 5 cut(s) 172, 1287, 1469, 1536, 1585
PspN4I GGNNCC 5 cut(s) 97, 108, 551, 1591, 1755
PspPI GGNCC 2 cut(s) 955, 1309
PspXI VCTCGAGB 1 cut(s) 1580
PstI CTGCAG 1 cut(s) 913
RruI TCGCGA 1 cut(s) 267
RsaI GTAC 4 cut(s) 228, 320, 500, 1647
RsaNI GTAC 4 cut(s) 227, 319, 499, 1646
RseI CAYNNNNRTG 1 cut(s) 1010
SacI GAGCTC 2 cut(s) 1063, 1635
SaqAI TTAA 6 cut(s) 380, 405, 558, 860, 969, 1430
SatI GCNGC 7 cut(s) 504, 548, 739, 909, 912, 1211, 1380
Sau3AI GATC 8 cut(s) 169, 526, 640, 665, 781, 922, 1264, 1400
Sau96I GGNCC 2 cut(s) 955, 1309
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 2 cut(s) 821, 875
ScrFI CCNGG 5 cut(s) 174, 1289, 1471, 1538, 1587
SduI GDGCHC 3 cut(s) 454, 1063, 1635
SfaNI GCATC 6 cut(s) 181, 1005, 1076, 1222, 1244, 1499
SfcI CTRYAG 2 cut(s) 184, 909
SfoI GGCGCC 1 cut(s) 551
Sfr274I CTCGAG 1 cut(s) 1580
SlaI CTCGAG 1 cut(s) 1580
SmiMI CAYNNNNRTG 1 cut(s) 1010
SmlI CTYRAG 5 cut(s) 379, 404, 689, 1580, 1634
SmoI CTYRAG 5 cut(s) 379, 404, 689, 1580, 1634
Sse9I AATT 8 cut(s) 478, 491, 559, 597, 742, 979, 1032, 1728
SsiI CCGC 7 cut(s) 504, 547, 739, 1210, 1213, 1328, 1361
SspDI GGCGCC 1 cut(s) 549
SspMI CTAG 5 cut(s) 147, 249, 984, 1196, 1340
SstI GAGCTC 2 cut(s) 1063, 1635
StyD4I CCNGG 5 cut(s) 172, 1287, 1469, 1536, 1585
StyI CCWWGG 1 cut(s) 1344
TaaI ACNGT 5 cut(s) 323, 997, 1447, 1495, 1758
TaqI TCGA 7 cut(s) 536, 543, 639, 840, 1394, 1551, 1581
TaqII GACCGA 2 cut(s) 953, 1191
TasI AATT 8 cut(s) 478, 491, 559, 597, 742, 979, 1032, 1728
TatI WGTACW 3 cut(s) 226, 318, 1645
TauI GCSGC 4 cut(s) 506, 550, 741, 1213
TfiI GAWTC 7 cut(s) 101, 214, 628, 755, 801, 1216, 1411
Tru1I TTAA 6 cut(s) 380, 405, 558, 860, 969, 1430
Tru9I TTAA 6 cut(s) 380, 405, 558, 860, 969, 1430
TscAI CASTG 2 cut(s) 650, 1002
TseFI GTSAC 2 cut(s) 179, 934
TseI GCWGC 3 cut(s) 908, 911, 1379
Tsp45I GTSAC 2 cut(s) 179, 934
TspDTI ATGAA 9 cut(s) 33, 375, 807, 900, 1454, 1502, 1537, 1615, 1689
TspGWI ACGGA 2 cut(s) 878, 1487
TspRI CASTG 2 cut(s) 650, 1002
Van91I CCANNNNNTGG 1 cut(s) 1226
Vha464I CTTAAG 2 cut(s) 379, 404
XapI RAATTY 1 cut(s) 979
XbaI TCTAGA 1 cut(s) 1195
XceI RCATGY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 2 cut(s) 59, 1342
XhoI CTCGAG 1 cut(s) 1580
XmiI GTMKAC 2 cut(s) 392, 466
XspI CTAG 5 cut(s) 147, 249, 984, 1196, 1340
ZrmI AGTACT 1 cut(s) 320
Zsp2I ATGCAT 2 cut(s) 1187, 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.