Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000570

Physical Location & Seq

Genomic Coordinates Reverse (-)

74131579 .. 74136840

Gene Structure 5262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG517700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGAGAATGTGAATGATCTGTCGGCTTCGTTGAGCTTTGCCTCCTCATATCTGTCAAATGGGTCTAGTGGAAGCCATGGATTTGCCTCGGCCAATGCTCAACCCGGCTTGAATACTGAGCATTTGAGTCTCAGCAAACTGAGTGACAATCTAGAGAGGTTGTTACTTGATTCTCAGTACGACTATAGTGATGCAGAGATTGTTGTTGAGGGCATCCCTGTTAGTGTTAATCGGTGTATATTAGCTGCCCGTAGTCAGTTTTTTCATGAGCTTTTTCAGAAGGGCAATGATAATTCGATGAAAGAAGGTAAACTGCAGTATCTGATGTCTGAATTGGTTCCTCACGGTGGGGTTGGCTACGAGGCCTTCAAGGTTTTCTTGAACTATTTGTACACCGGGAAGCTTAAGCCATCACCTCCAGAAGTGTCGACATGTGTTGAGGATGTTTGTGCTCATGATGCATGTGGCCCTGCTATTAACTATGCTGTGGAATTGATGTATGCTTCTTCCACGTTTCAAATGAAGGAGCTTGTTCAAGTTGTTCAGCGCCGTCTTTGGAACTTTGTTGACAAAGCTCTTGTTGAAGATGTGATCCCAATTCTTGTAGCTGCTTTCCACTGCCAACTGAGTCAGCTGCTCTCACACTGTGTTCAGAGGGTCTCAAGGTCAGATCTCGACAATGTGGCTCTAGAGAAAGAGCTTCCTCATGAAGTTTTAGATGATGTAAAATCACTCCGTCTCGAATCTCAGGAAAAGGATGAATCAATTATGCTGGAGAAGGAGCCGAGGGAGGATAAGAGGCTTAAAAGCATCAGGAGAATCCACAGGGCATTAGACTCTGATGATGTTGAACTTGTTACCCTTCTTCTGAATGAGTCTGATTCTATCACATTAGATGATGCTCATGCTCTCCACTATGCTGCTGCATACTGTGATCCTAAGATTGTTAAGGAGATTCTTGGTCTAGGGTTGGCAGATGTCAACCTTCGCAATGCACGAGAACATACTGTGCTTCATGTGGCAGCAAGGCGTAAGGAGCCATCAGTTATAGTTCATCTTCTGAACAAGGGAGCCTCTGCCTTAGAAACTACATCAGATGGTCAAACTGCTGTTGCAATTTGCCGGAGGTTGACTAGACCAAAGGATTATAATGAGAACACAAAGCAGGGAGAGGAATCTAATAAAGACCGAATGTGTATAGATCTTCTAGAGAGAGAGATGCGAAGAAACTCGATATGTGGGAACTTGTCAAACACATCACAGATGGTAGCTGATGATTTTCACGTGAGCCTGAGCTATCTAGAAAATAGAGTGGCATTTGCACATTTGTTGTTTCCTACCGAAGCCAAGCTTGCTATGGAAATGGCAGATGCTGATTTAACATCAGGGTACACTGGCCTTTCAGGATCAAGAACCTCAAATGGAAACTTACGTGAGGTTGATTTGAATGAAACACCCTCTGGAAGGGCCAAAAGACTCCAAGAAAAATTGCAAACCCTTATTAAAACAGGTATGGTTCCTTTACTTGTGACAACTGATATGTATCCCAAACCCTACTATAAATCCTGTGTGATTTGCACGTCTCCTTGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank_2 BTB DUF3420 NPR1_like_C

Protein Analysis

531

Amino Acids

59.12

Weight (kDa)

5.47

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	58 - 179	4.3e-12	BTB/POZ domain
DUF3420	PF11900	224 - 275	1.2e-09	Domain of unknown function (DUF3420)
Ank_2	PF12796	304 - 374	5.5e-07	Ankyrin repeats (3 copies)
NPR1_like_C	PF12313	375 - 503	6.5e-44	NPR1/NIM1 like defence protein C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45110 AT5G45110
fragaria_vesca	FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica	MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica	Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis	pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis	RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata	RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora	Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa	Rorug02G0432800 Rorug05G0051600
rosa_samantha	Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana	Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1149
AccI	GTMKAC	1 cut(s)	428
AclWI	GGATC	3 cut(s)	586, 929, 1414
AcoI	YGGCCR	1 cut(s)	90
AcvI	CACGTG	1 cut(s)	1285
AdeI	CACNNNGTG	1 cut(s)	647
AfaI	GTAC	4 cut(s)	179, 392, 1391, 1591
AfiI	CCNNNNNNNGG	2 cut(s)	347, 1464
AflII	CTTAAG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	8 cut(s)	112, 370, 382, 518, 536, 584, 851, 1447
AjiI	CACGTC	1 cut(s)	1581
Alw21I	GWGCWC	1 cut(s)	454
Alw26I	GTCTC	4 cut(s)	134, 664, 743, 1587
AlwI	GGATC	3 cut(s)	586, 929, 1414
AlwNI	CAGNNNCTG	2 cut(s)	322, 1373
AoxI	GGCC	5 cut(s)	90, 363, 466, 1396, 1467
ApeKI	GCWGC	6 cut(s)	245, 608, 634, 920, 923, 1022
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	2 cut(s)	467, 1467
AsuC2I	CCSGG	2 cut(s)	105, 397
AsuHPI	GGTGA	1 cut(s)	405
BaeI	ACNNNNGTAYC	2 cut(s)	302, 335
BauI	CACGAG	1 cut(s)	996
BbrPI	CACGTG	1 cut(s)	1285
Bbv12I	GWGCWC	1 cut(s)	454
BbvI	GCAGC	6 cut(s)	232, 595, 621, 907, 910, 1034
BccI	CCATC	4 cut(s)	418, 1048, 1091, 1258
BceAI	ACGGC	1 cut(s)	534
BciVI	GTATCC	1 cut(s)	1554
BcnI	CCSGG	2 cut(s)	105, 397
BcoDI	GTCTC	4 cut(s)	134, 664, 743, 1587
BfaI	CTAG	7 cut(s)	66, 152, 689, 965, 1134, 1208, 1301
BfmI	CTRYAG	2 cut(s)	184, 314
BfoI	RGCGCY	1 cut(s)	550
BfrI	CTTAAG	1 cut(s)	404
BfuI	GTATCC	1 cut(s)	1554
BglII	AGATCT	2 cut(s)	670, 1201
BisI	GCNGC	6 cut(s)	246, 609, 635, 921, 924, 1023
BlsI	GCNGC	6 cut(s)	247, 610, 636, 922, 925, 1024
Bme1390I	CCNGG	2 cut(s)	105, 397
BmgBI	CACGTC	1 cut(s)	1581
BmgT120I	GGNCC	2 cut(s)	467, 1467
BmiI	GGNNCC	5 cut(s)	339, 783, 1038, 1072, 1518
BmrFI	CCNGG	2 cut(s)	105, 397
BmsI	GCATC	7 cut(s)	181, 222, 448, 819, 889, 1209, 1360
BpmI	CTGGAG	2 cut(s)	402, 794
Bpu10I	CCTNAGC	1 cut(s)	1292
BpuEI	CTTGAG	1 cut(s)	646
BpuMI	CCSGG	2 cut(s)	105, 397
BsaAI	YACGTR	2 cut(s)	1285, 1433
BsaBI	GATNNNNATC	1 cut(s)	1542
BsaI	GGTCTC	1 cut(s)	664
BsaJI	CCNNGG	3 cut(s)	76, 87, 785
Bsc4I	CCNNNNNNNGG	2 cut(s)	347, 1464
Bse1I	ACTGG	1 cut(s)	1399
Bse3DI	GCAATG	2 cut(s)	292, 997
Bse8I	GATNNNNATC	1 cut(s)	1542
BseDI	CCNNGG	3 cut(s)	76, 87, 785
BseGI	GGATG	3 cut(s)	213, 448, 763
BseJI	GATNNNNATC	1 cut(s)	1542
BseLI	CCNNNNNNNGG	2 cut(s)	347, 1464
BseMI	GCAATG	2 cut(s)	292, 997
BseMII	CTCAG	7 cut(s)	108, 131, 145, 188, 617, 761, 1283
BseNI	ACTGG	1 cut(s)	1399
BseRI	GAGGAG	1 cut(s)	34
BseXI	GCAGC	6 cut(s)	232, 595, 621, 907, 910, 1034
BshFI	GGCC	5 cut(s)	92, 365, 468, 1398, 1469
BsiHKAI	GWGCWC	1 cut(s)	454
BsiSI	CCGG	3 cut(s)	105, 396, 1123
BslI	CCNNNNNNNGG	2 cut(s)	347, 1464
BsmAI	GTCTC	4 cut(s)	134, 664, 743, 1587
BsmBI	CGTCTC	2 cut(s)	743, 1587
BsnI	GGCC	5 cut(s)	92, 365, 468, 1398, 1469
Bso31I	GGTCTC	1 cut(s)	664
Bsp1286I	GDGCHC	1 cut(s)	454
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	6 cut(s)	16, 591, 670, 934, 1201, 1406
Bsp19I	CCATGG	1 cut(s)	76
BspANI	GGCC	5 cut(s)	92, 365, 468, 1398, 1469
BspCNI	CTCAG	7 cut(s)	109, 132, 144, 187, 618, 760, 1284
BspHI	TCATGA	3 cut(s)	265, 454, 706
BspLI	GGNNCC	5 cut(s)	339, 783, 1038, 1072, 1518
BspMAI	CTGCAG	1 cut(s)	318
BspPI	GGATC	3 cut(s)	586, 929, 1414
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	664
BsrDI	GCAATG	2 cut(s)	292, 997
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	1399
BssECI	CCNNGG	3 cut(s)	76, 87, 785
BssMI	GATC	6 cut(s)	16, 591, 670, 934, 1201, 1406
BssSI	CACGAG	1 cut(s)	996
BssT1I	CCWWGG	1 cut(s)	76
Bst2BI	CACGAG	1 cut(s)	996
Bst4CI	ACNGT	4 cut(s)	347, 647, 932, 1009
BstAFI	CTTAAG	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	390
BstBAI	YACGTR	2 cut(s)	1285, 1433
BstC8I	GCNNGC	1 cut(s)	1353
BstDEI	CTNAG	9 cut(s)	117, 131, 140, 174, 626, 747, 939, 1081, 1292
BstDSI	CCRYGG	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	1462
BstF5I	GGATG	3 cut(s)	213, 448, 763
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	6 cut(s)	19, 594, 673, 937, 1204, 1409
BstMAI	GTCTC	4 cut(s)	134, 664, 743, 1587
BstMBI	GATC	6 cut(s)	16, 591, 670, 934, 1201, 1406
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 1036, 1352
BstNSI	RCATGY	2 cut(s)	435, 465
BstSCI	CCNGG	2 cut(s)	103, 395
BstSFI	CTRYAG	2 cut(s)	184, 314
BstV1I	GCAGC	6 cut(s)	232, 595, 621, 907, 910, 1034
BstX2I	RGATCY	2 cut(s)	670, 1201
BstYI	RGATCY	2 cut(s)	670, 1201
BsuI	GTATCC	1 cut(s)	1554
BsuRI	GGCC	5 cut(s)	92, 365, 468, 1398, 1469
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	1581
BtsCI	GGATG	3 cut(s)	213, 448, 763
BtsI	GCAGTG	1 cut(s)	616
BtsIMutI	CAGTG	3 cut(s)	616, 643, 1392
Cac8I	GCNNGC	1 cut(s)	1353
CaiI	CAGNNNCTG	2 cut(s)	322, 1373
CciI	TCATGA	3 cut(s)	265, 454, 706
CfoI	GCGC	1 cut(s)	549
Cfr13I	GGNCC	2 cut(s)	467, 1467
Csp6I	GTAC	4 cut(s)	178, 391, 1390, 1590
CviAII	CATG	8 cut(s)	77, 266, 432, 455, 462, 707, 905, 1016
CviQI	GTAC	4 cut(s)	178, 391, 1390, 1590
DdeI	CTNAG	9 cut(s)	117, 131, 140, 174, 626, 747, 939, 1081, 1292
DpnI	GATC	6 cut(s)	18, 593, 672, 936, 1203, 1408
DpnII	GATC	6 cut(s)	16, 591, 670, 934, 1201, 1406
DraIII	CACNNNGTG	1 cut(s)	647
EaeI	YGGCCR	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	76
Eco147I	AGGCCT	1 cut(s)	365
Eco31I	GGTCTC	1 cut(s)	664
Eco72I	CACGTG	1 cut(s)	1285
EcoNI	CCTNNNNNAGG	1 cut(s)	1462
EcoT14I	CCWWGG	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	76
Esp3I	CGTCTC	2 cut(s)	743, 1587
FaeI	CATG	8 cut(s)	80, 269, 435, 458, 465, 710, 908, 1019
FalI	AAGNNNNNCTT	4 cut(s)	362, 394, 1335, 1367
FatI	CATG	8 cut(s)	76, 265, 431, 454, 461, 706, 904, 1015
FblI	GTMKAC	1 cut(s)	428
Fnu4HI	GCNGC	6 cut(s)	246, 609, 635, 921, 924, 1023
FokI	GGATG	3 cut(s)	200, 455, 770
Fsp4HI	GCNGC	6 cut(s)	246, 609, 635, 921, 924, 1023
FspBI	CTAG	7 cut(s)	66, 152, 689, 965, 1134, 1208, 1301
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	6 cut(s)	246, 609, 635, 921, 924, 1023
GsuI	CTGGAG	2 cut(s)	402, 794
HaeII	RGCGCY	1 cut(s)	550
HaeIII	GGCC	5 cut(s)	92, 365, 468, 1398, 1469
HapII	CCGG	3 cut(s)	105, 396, 1123
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	8 cut(s)	80, 269, 435, 458, 465, 710, 908, 1019
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HincII	GTYRAC	4 cut(s)	429, 568, 982, 1131
HindII	GTYRAC	4 cut(s)	429, 568, 982, 1131
HindIII	AAGCTT	2 cut(s)	401, 1349
HpaII	CCGG	3 cut(s)	105, 396, 1123
HphI	GGTGA	1 cut(s)	405
Hpy166II	GTNNAC	7 cut(s)	311, 393, 429, 568, 982, 1131, 1392
Hpy8I	GTNNAC	7 cut(s)	311, 393, 429, 568, 982, 1131, 1392
HpyAV	CCTTC	8 cut(s)	274, 299, 376, 517, 772, 872, 995, 1458
HpyCH4III	ACNGT	4 cut(s)	347, 647, 932, 1009
HpyCH4IV	ACGT	4 cut(s)	512, 1284, 1432, 1580
HpyCH4V	TGCA	9 cut(s)	194, 316, 461, 926, 995, 1115, 1322, 1492, 1578
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 1036, 1352
HpyF3I	CTNAG	9 cut(s)	117, 131, 140, 174, 626, 747, 939, 1081, 1292
HpySE526I	ACGT	4 cut(s)	512, 1284, 1432, 1580
Hsp92II	CATG	8 cut(s)	80, 269, 435, 458, 465, 710, 908, 1019
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	6 cut(s)	16, 591, 670, 934, 1201, 1406
LmnI	GCTCC	4 cut(s)	526, 781, 1036, 1070
Lsp1109I	GCAGC	6 cut(s)	232, 595, 621, 907, 910, 1034
LweI	GCATC	7 cut(s)	181, 222, 448, 819, 889, 1209, 1360
MaeI	CTAG	7 cut(s)	66, 152, 689, 965, 1134, 1208, 1301
MaeII	ACGT	4 cut(s)	512, 1284, 1432, 1580
MaeIII	GTNAC	4 cut(s)	143, 162, 856, 1528
MalI	GATC	6 cut(s)	18, 593, 672, 936, 1203, 1408
MboI	GATC	6 cut(s)	16, 591, 670, 934, 1201, 1406
MboII	GAAGA	6 cut(s)	498, 596, 857, 1049, 1196, 1236
MflI	RGATCY	2 cut(s)	670, 1201
MhlI	GDGCHC	1 cut(s)	454
MluCI	AATT	7 cut(s)	292, 332, 491, 597, 765, 1116, 1487
MlyI	GAGTC	5 cut(s)	136, 637, 830, 884, 1470
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	8 cut(s)	228, 405, 477, 804, 948, 1379, 1503, 1594
MspA1I	CMGCKG	1 cut(s)	634
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	3 cut(s)	105, 396, 1123
MspR9I	CCNGG	2 cut(s)	105, 397
MwoI	GCNNNNNNNGC	3 cut(s)	458, 1036, 1352
NciI	CCSGG	2 cut(s)	105, 397
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	6 cut(s)	16, 591, 670, 934, 1201, 1406
NlaIII	CATG	8 cut(s)	80, 269, 435, 458, 465, 710, 908, 1019
NlaIV	GGNNCC	5 cut(s)	339, 783, 1038, 1072, 1518
NmeAIII	GCCGAG	2 cut(s)	68, 810
NmuCI	GTSAC	2 cut(s)	143, 1528
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	2 cut(s)	435, 465
PagI	TCATGA	3 cut(s)	265, 454, 706
PceI	AGGCCT	1 cut(s)	365
PciI	ACATGT	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	994
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	7 cut(s)	170, 743, 761, 819, 881, 955, 1175
PkrI	GCNGC	6 cut(s)	247, 610, 636, 922, 925, 1024
PleI	GAGTC	5 cut(s)	135, 636, 830, 883, 1470
PmaCI	CACGTG	1 cut(s)	1285
PmlI	CACGTG	1 cut(s)	1285
PpsI	GAGTC	5 cut(s)	135, 636, 830, 883, 1470
Ppu21I	YACGTR	2 cut(s)	1285, 1433
PscI	ACATGT	1 cut(s)	431
PsiI	TTATAA	1 cut(s)	1149
PspCI	CACGTG	1 cut(s)	1285
PspN4I	GGNNCC	5 cut(s)	339, 783, 1038, 1072, 1518
PspPI	GGNCC	2 cut(s)	467, 1467
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
PstI	CTGCAG	1 cut(s)	318
PstNI	CAGNNNCTG	2 cut(s)	322, 1373
PsuI	RGATCY	2 cut(s)	670, 1201
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	4 cut(s)	179, 392, 1391, 1591
RsaNI	GTAC	4 cut(s)	178, 391, 1390, 1590
SalI	GTCGAC	1 cut(s)	427
SaqAI	TTAA	8 cut(s)	228, 405, 477, 804, 948, 1379, 1503, 1594
SatI	GCNGC	6 cut(s)	246, 609, 635, 921, 924, 1023
Sau3AI	GATC	6 cut(s)	16, 591, 670, 934, 1201, 1406
Sau96I	GGNCC	2 cut(s)	467, 1467
SchI	GAGTC	5 cut(s)	136, 637, 830, 884, 1470
ScrFI	CCNGG	2 cut(s)	105, 397
SduI	GDGCHC	1 cut(s)	454
SfaNI	GCATC	7 cut(s)	181, 222, 448, 819, 889, 1209, 1360
SfcI	CTRYAG	2 cut(s)	184, 314
SmlI	CTYRAG	2 cut(s)	404, 661
SmoI	CTYRAG	2 cut(s)	404, 661
Sse9I	AATT	7 cut(s)	292, 332, 491, 597, 765, 1116, 1487
SseBI	AGGCCT	1 cut(s)	365
SspMI	CTAG	7 cut(s)	66, 152, 689, 965, 1134, 1208, 1301
StuI	AGGCCT	1 cut(s)	365
StyD4I	CCNGG	2 cut(s)	103, 395
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	4 cut(s)	347, 647, 932, 1009
TaiI	ACGT	4 cut(s)	515, 1287, 1435, 1583
TaqI	TCGA	5 cut(s)	296, 428, 675, 741, 1232
TaqII	GACCGA	1 cut(s)	1203
TasI	AATT	7 cut(s)	292, 332, 491, 597, 765, 1116, 1487
TatI	WGTACW	2 cut(s)	390, 1589
TfiI	GAWTC	7 cut(s)	170, 743, 761, 819, 881, 955, 1175
Tru1I	TTAA	8 cut(s)	228, 405, 477, 804, 948, 1379, 1503, 1594
Tru9I	TTAA	8 cut(s)	228, 405, 477, 804, 948, 1379, 1503, 1594
TscAI	CASTG	3 cut(s)	623, 650, 1399
TseFI	GTSAC	2 cut(s)	143, 1528
TseI	GCWGC	6 cut(s)	245, 608, 634, 920, 923, 1022
Tsp45I	GTSAC	2 cut(s)	143, 1528
TspDTI	ATGAA	8 cut(s)	254, 314, 536, 723, 774, 1004, 1043, 1464
TspGWI	ACGGA	1 cut(s)	725
TspRI	CASTG	3 cut(s)	623, 650, 1399
Vha464I	CTTAAG	1 cut(s)	404
XagI	CCTNNNNNAGG	1 cut(s)	1462
XbaI	TCTAGA	4 cut(s)	151, 688, 1207, 1300
XceI	RCATGY	2 cut(s)	435, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1354
XmiI	GTMKAC	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	7 cut(s)	66, 152, 689, 965, 1134, 1208, 1301
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.