Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000570

Physical Location & Seq

Genomic Coordinates Reverse (-)

71577230 .. 71580748

Gene Structure 3519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG494400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAAATGGCGGATCATCCAACATCAGAGTCTAGTGGGAACTTACGAGAGGTCGATTTGAATGAAACACCCTCTGTACGATCCGAAAGACTCCACGAAAAATTGCGAGCCCTAATTAAAACAGTGGATATGGGACGGCGCTTCTTCCCCCATTGCTCAGAAGTTCTTGATAAGTTTCTGGATGATGAGACGGACATGGCTGATTACTTCCTTGAAAAAGAACTCCTGAAGAGGAGAAAAACAAGAAGAGGATGCGCTTCATGGAACTTAAAGATGATATACATAAGGCATTTTGCAGGGATGTGGCTGAAAACCAGGGTCAGTTTTGACAGCCTCATCATCATGGATCCGGCTCCTCTAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank_2 BTB DUF3420 NPR1_like_C

Protein Analysis

121

Amino Acids

14.26

Weight (kDa)

7.82

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPR1_like_C	PF12313	6 - 83	6.4e-23	NPR1/NIM1 like defence protein C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45110 AT5G45110
fragaria_vesca	FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica	MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica	Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis	pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis	RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata	RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora	Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa	Rorug02G0432800 Rorug05G0051600
rosa_samantha	Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana	Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	4 cut(s)	21, 75, 341, 354
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	78
AgsI	TTSAA	2 cut(s)	61, 215
AjnI	CCWGG	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	182
AlwI	GGATC	4 cut(s)	21, 75, 341, 354
AspLEI	GCGC	2 cut(s)	141, 257
BamHI	GGATCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	112
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	182
BfaI	CTAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	316
BmiI	GGNNCC	2 cut(s)	348, 354
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	315
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	4 cut(s)	16, 187, 257, 306
BseMI	GCAATG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	247, 345
BsiSI	CCGG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	182
BsmBI	CGTCTC	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	13, 80, 346
BspACI	CCGC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	348, 354
BspPI	GGATC	4 cut(s)	21, 75, 341, 354
BsrDI	GCAATG	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	3 cut(s)	13, 80, 346
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	224, 241
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	1 cut(s)	157
BstF5I	GGATG	4 cut(s)	16, 187, 257, 306
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	2 cut(s)	141, 257
BstKTI	GATC	3 cut(s)	16, 83, 349
BstMAI	GTCTC	1 cut(s)	182
BstMBI	GATC	3 cut(s)	13, 80, 346
BstNI	CCWGG	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	314
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
BtsCI	GGATG	4 cut(s)	16, 187, 257, 306
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	108
CfoI	GCGC	2 cut(s)	141, 257
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	196, 261, 343
CviJI	RGCY	5 cut(s)	110, 200, 307, 333, 353
CviKI_1	RGCY	5 cut(s)	110, 200, 307, 333, 353
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	157
DpnI	GATC	3 cut(s)	15, 82, 348
DpnII	GATC	3 cut(s)	13, 80, 346
Eam1104I	CTCTTC	2 cut(s)	224, 241
EarI	CTCTTC	2 cut(s)	224, 241
EciI	GGCGGA	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	112
Eco57I	CTGAAG	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	112
Esp3I	CGTCTC	1 cut(s)	182
FaeI	CATG	3 cut(s)	199, 264, 346
FaiI	YATR	6 cut(s)	131, 197, 262, 280, 284, 344
FaqI	GGGAC	1 cut(s)	147
FatI	CATG	3 cut(s)	195, 260, 342
FokI	GGATG	4 cut(s)	3, 194, 264, 313
FriOI	GRGCYC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	33
GlaI	GCGC	2 cut(s)	140, 256
HaeII	RGCGCY	1 cut(s)	142
HapII	CCGG	1 cut(s)	350
HhaI	GCGC	2 cut(s)	141, 257
Hin1II	CATG	3 cut(s)	199, 264, 346
Hin6I	GCGC	2 cut(s)	139, 255
HinP1I	GCGC	2 cut(s)	139, 255
HinfI	GANTC	2 cut(s)	29, 90
HpaII	CCGG	1 cut(s)	350
Hpy188I	TCNGA	3 cut(s)	28, 85, 160
Hpy188III	TCNNGA	3 cut(s)	167, 179, 226
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	1 cut(s)	296
HpyF3I	CTNAG	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	199, 264, 346
HspAI	GCGC	2 cut(s)	139, 255
Kzo9I	GATC	3 cut(s)	13, 80, 346
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	5 cut(s)	164, 239, 282, 301, 328
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	33
MalI	GATC	3 cut(s)	15, 82, 348
MboI	GATC	3 cut(s)	13, 80, 346
MboII	GAAGA	3 cut(s)	136, 241, 258
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	2 cut(s)	101, 114
MlyI	GAGTC	2 cut(s)	38, 84
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	6 cut(s)	43, 82, 225, 242, 344, 366
MseI	TTAA	2 cut(s)	117, 269
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
NdeII	GATC	3 cut(s)	13, 80, 346
NlaIII	CATG	3 cut(s)	199, 264, 346
NlaIV	GGNNCC	2 cut(s)	348, 354
PleI	GAGTC	2 cut(s)	37, 84
PpsI	GAGTC	2 cut(s)	37, 84
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	2 cut(s)	348, 354
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
RseI	CAYNNNNRTG	1 cut(s)	341
SaqAI	TTAA	2 cut(s)	117, 269
Sau3AI	GATC	3 cut(s)	13, 80, 346
SchI	GAGTC	2 cut(s)	38, 84
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	1 cut(s)	54
SfaNI	GCATC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	101, 114
SsiI	CCGC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	101, 114
Tru1I	TTAA	2 cut(s)	117, 269
Tru9I	TTAA	2 cut(s)	117, 269
TscAI	CASTG	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	78, 249
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	1 cut(s)	129
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.