Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000570

Physical Location & Seq

Genomic Coordinates Reverse (-)

66301941 .. 66303286

Gene Structure 1346 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G040680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCTGTGAACATGTCAAACACATCACAGGTGATAGCTGATGATTTGAATGTGAGGCTGGACTATTTTGAAAACAGAGTGGCATTTGCACGGTTGTTATTTCCCGCGGAAGCCAAGCTTGCTATGGAAATGGCGGATCATCCAACATCAGAGTCTAGTGGGAACTTACGAGAGGTCGATTTGAATGAAACACCCTCTGTACGATCCGAAAGACTCCACGAAAATTTGCGAGCCCTAATTAAAACAGTGGATATGGGACGGCGCTTCTTCCCCCATTGCTCAGAAGTTCTTGATAAGTTTCTGGATGATGAGACGGACATGGCTGATTACTTCCTTGAAAAAGGAACTCCTGAAGAGGAGAAAAACAAGAAGAGGATGCGCTTCATGGAACTTAAAGATGATATACAGAAGGCATTTTGCAGGGATGTGGCTGAAAACCAGGGTCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank_2 BTB DUF3420 NPR1_like_C

Protein Analysis

150

Amino Acids

17.41

Weight (kDa)

4.88

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPR1_like_C	PF12313	2 - 146	3.2e-49	NPR1/NIM1 like defence protein C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45110 AT5G45110
fragaria_vesca	FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica	MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica	Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis	pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis	RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata	RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora	Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa	Rorug02G0432800 Rorug05G0051600
rosa_samantha	Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana	Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	107
AciI	CCGC	3 cut(s)	105, 107, 134
AclWI	GGATC	2 cut(s)	144, 198
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	201
AflIII	ACRYGT	1 cut(s)	12
AgsI	TTSAA	4 cut(s)	49, 71, 184, 338
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	2 cut(s)	38, 118
AluI	AGCT	2 cut(s)	38, 118
Alw26I	GTCTC	1 cut(s)	305
AlwI	GGATC	2 cut(s)	144, 198
ApoI	RAATTY	1 cut(s)	223
AspLEI	GCGC	2 cut(s)	264, 381
AsuHPI	GGTGA	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	235
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	440
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	265
Bme1390I	CCNGG	1 cut(s)	440
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	366
BsaJI	CCNNGG	2 cut(s)	105, 439
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	105, 439
BseGI	GGATG	4 cut(s)	139, 310, 381, 430
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	270
BsmAI	GTCTC	1 cut(s)	305
BsmBI	CGTCTC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	235
Bsp143I	GATC	2 cut(s)	136, 203
BspACI	CCGC	3 cut(s)	105, 107, 134
BspCNI	CTCAG	1 cut(s)	293
BspFNI	CGCG	1 cut(s)	107
BspPI	GGATC	2 cut(s)	144, 198
BsrDI	GCAATG	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	105, 439
BssMI	GATC	2 cut(s)	136, 203
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	2 cut(s)	93, 247
Bst6I	CTCTTC	2 cut(s)	348, 365
BstC8I	GCNNGC	2 cut(s)	120, 231
BstDEI	CTNAG	1 cut(s)	280
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	4 cut(s)	139, 310, 381, 430
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	2 cut(s)	264, 381
BstKTI	GATC	2 cut(s)	139, 206
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	136, 203
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	440
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	107
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	4 cut(s)	139, 310, 381, 430
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	120, 231
CfoI	GCGC	2 cut(s)	264, 381
Cfr42I	CCGCGG	1 cut(s)	108
Csp6I	GTAC	1 cut(s)	200
CviAII	CATG	3 cut(s)	13, 319, 385
CviJI	RGCY	8 cut(s)	5, 38, 58, 113, 118, 233, 323, 431
CviKI_1	RGCY	8 cut(s)	5, 38, 58, 113, 118, 233, 323, 431
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	1 cut(s)	280
DpnI	GATC	2 cut(s)	138, 205
DpnII	GATC	2 cut(s)	136, 203
Eam1104I	CTCTTC	2 cut(s)	348, 365
EarI	CTCTTC	2 cut(s)	348, 365
EciI	GGCGGA	1 cut(s)	149
Eco24I	GRGCYC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	438
EcoT38I	GRGCYC	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	305
FaeI	CATG	3 cut(s)	16, 322, 388
FaiI	YATR	6 cut(s)	14, 125, 254, 320, 386, 404
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	3 cut(s)	12, 318, 384
FauI	CCCGC	1 cut(s)	112
FokI	GGATG	4 cut(s)	126, 317, 388, 437
FriOI	GRGCYC	1 cut(s)	235
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	2 cut(s)	263, 380
HaeII	RGCGCY	1 cut(s)	265
HhaI	GCGC	2 cut(s)	264, 381
Hin1II	CATG	3 cut(s)	16, 322, 388
Hin6I	GCGC	2 cut(s)	262, 379
HinP1I	GCGC	2 cut(s)	262, 379
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	2 cut(s)	152, 213
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	3 cut(s)	151, 208, 283
Hpy188III	TCNNGA	3 cut(s)	290, 302, 350
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	403
HpyCH4III	ACNGT	2 cut(s)	93, 247
HpyCH4V	TGCA	2 cut(s)	89, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	280
Hsp92II	CATG	3 cut(s)	16, 322, 388
HspAI	GCGC	2 cut(s)	262, 379
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	136, 203
LpnPI	CCDG	6 cut(s)	14, 44, 287, 363, 406, 425
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	156
MalI	GATC	2 cut(s)	138, 205
MboI	GATC	2 cut(s)	136, 203
MboII	GAAGA	3 cut(s)	259, 365, 382
MhlI	GDGCHC	1 cut(s)	235
MluCI	AATT	2 cut(s)	223, 237
MlyI	GAGTC	2 cut(s)	161, 207
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	5 cut(s)	48, 166, 205, 349, 366
MseI	TTAA	2 cut(s)	240, 393
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	440
MvaI	CCWGG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	2 cut(s)	136, 203
NlaIII	CATG	3 cut(s)	16, 322, 388
NspI	RCATGY	1 cut(s)	16
PciI	ACATGT	1 cut(s)	12
PleI	GAGTC	2 cut(s)	160, 207
PpsI	GAGTC	2 cut(s)	160, 207
PscI	ACATGT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
SacII	CCGCGG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	240, 393
Sau3AI	GATC	2 cut(s)	136, 203
SchI	GAGTC	2 cut(s)	161, 207
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	1 cut(s)	235
SetI	ASST	4 cut(s)	33, 40, 120, 177
SfaNI	GCATC	1 cut(s)	366
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
Sse9I	AATT	2 cut(s)	223, 237
SsiI	CCGC	3 cut(s)	105, 107, 134
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	1 cut(s)	438
TaaI	ACNGT	2 cut(s)	93, 247
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	223, 237
Tru1I	TTAA	2 cut(s)	240, 393
Tru9I	TTAA	2 cut(s)	240, 393
TscAI	CASTG	1 cut(s)	252
TspDTI	ATGAA	2 cut(s)	201, 373
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	1 cut(s)	252
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	16
XcmI	CCANNNNNNNNNTGG	1 cut(s)	121
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.