pycom05g23570

Regulatory protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25421572 .. 25423087
1516 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23570.1

Sequence Viewer

Length: 987 bp
ATGCCAGCCGTGGACCCCTTGCGTGAGAAGAGAATCAGGAGAATACATAAGGCACTGGACTCAGATGATGTTGAACTTATGAAACTTCTTTTAACCGAGTCTGATGTAACCTTAGACGAAGCCAATGCGCTCCATTATGCTGCTGCTTACTGCGATCCTAAGGTTGTGGCTGAAGTGCTTGGCCTGGGTCTGGCTGATGTTAACCTCCGGGATTCCCGGGGTTATACAGTGCTTCACATTGCTATGATGCGGAAAGAGCCATCAATTATAATATTGCTTTTGTCTAATGGCGCTCGTGCATCAGAGCCGACTTTGGAAGGTGAGAGTGCTGTTAGTATTTGCCGGAGGTTGACAAGGCCAAAGGATTATCATACAAAAACAGAGCGGGGGCAAGAAGCAAACAAAGACCGGATTTGCATTGATGTTCTTGAGAGAGAAATGCAGAGGAATCCAATGGCTGGAGAGGCATCTATATCTTCCCAAATAACGCCCAATGATCTGCACATGAGATTGCTGAAACTGGAGAATCGAGTGGCATTCGCCAGATTGTTATTCCCTGCTGAAGCCAAGCTAGCCATGGCCATTTCACAGGCAGACACAACGCCTGAGTTTGCCGGGATCTCTTCGTTGAAAGGATCTAGTGGGAATTTGATGGAGGTTGATTTGAACGAGACTCCCACTGTGCAGAACAAAAGACTCCTTTCTAGGTTGGAATCCCTTGTGAAAACAGTCAGTATGGGTAGACACTATTTTCCACATTGCTCGGAAGTCCTCGATAAGTTCCTTCAGGTCGACCTTCCTGATTTGTGTGTCCTTGAGACGGGCACCACTGACGAGCAGAAAATAAAGAGGCGGCGTTTCTTGGAGCTTAAGGAGGAAGTACAAAAAGCATTTGACAAGGACAAAGCTGATAAGAACCTATCCGGGCTGTCTTCGTCATCCTCCTCACTTCCTCCGAAAAAAGTTGGGCGCAAGTCCAAAGGTTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling

Protein Analysis

329

Amino Acids

36.58

Weight (kDa)

8.18

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 16 - 99 3.3e-09 Ankyrin repeats (3 copies)
NPR1_like_C PF12313 115 - 316 9.3e-88 NPR1/NIM1 like defence protein C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000570)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G45110 AT5G45110
fragaria_vesca FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa Rorug02G0432800 Rorug05G0051600
rosa_samantha Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 824
AccB7I CCANNNNNTGG 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 385
AccI GTMKAC 2 cut(s) 742, 792
AciI CCGC 3 cut(s) 250, 385, 853
AclWI GGATC 3 cut(s) 149, 626, 643
AcoI YGGCCR 1 cut(s) 579
AcsI RAATTY 1 cut(s) 646
AcuI CTGAAG 3 cut(s) 192, 582, 770
AfaI GTAC 1 cut(s) 882
AfiI CCNNNNNNNGG 3 cut(s) 190, 458, 820
AflII CTTAAG 1 cut(s) 869
AgsI TTSAA 3 cut(s) 74, 631, 667
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 3 cut(s) 571, 868, 908
AluI AGCT 3 cut(s) 571, 868, 908
Alw26I GTCTC 2 cut(s) 665, 812
AlwI GGATC 3 cut(s) 149, 626, 643
Ama87I CYCGRG 1 cut(s) 216
AoxI GGCC 3 cut(s) 181, 356, 579
ApeKI GCWGC 2 cut(s) 140, 143
ApoI RAATTY 1 cut(s) 646
AspLEI GCGC 3 cut(s) 130, 293, 972
AspS9I GGNCC 1 cut(s) 13
AsuC2I CCSGG 5 cut(s) 209, 217, 218, 616, 925
AsuHPI GGTGA 1 cut(s) 332
AsuNHI GCTAGC 1 cut(s) 571
AvaI CYCGRG 1 cut(s) 216
AvaII GGWCC 1 cut(s) 13
AxyI CCTNAGG 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 827
BalI TGGCCA 1 cut(s) 581
BanI GGYRCC 1 cut(s) 824
BauI CACGAG 1 cut(s) 294
BbsI GAAGAC 1 cut(s) 924
BbvI GCAGC 2 cut(s) 127, 130
BccI CCATC 2 cut(s) 268, 646
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 5 cut(s) 209, 217, 218, 616, 925
BcoDI GTCTC 2 cut(s) 665, 812
BfaI CTAG 3 cut(s) 572, 639, 705
BfoI RGCGCY 1 cut(s) 294
BfrI CTTAAG 1 cut(s) 869
BisI GCNGC 3 cut(s) 141, 144, 854
BlsI GCNGC 3 cut(s) 142, 145, 855
Bme1390I CCNGG 6 cut(s) 185, 209, 217, 218, 616, 925
Bme18I GGWCC 1 cut(s) 13
BmeT110I CYCGRG 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 2 cut(s) 15, 826
BmrFI CCNGG 6 cut(s) 185, 209, 217, 218, 616, 925
BmsI GCATC 3 cut(s) 237, 308, 476
BmtI GCTAGC 1 cut(s) 575
BpiI GAAGAC 1 cut(s) 924
BpmI CTGGAG 2 cut(s) 480, 542
BpuEI CTTGAG 2 cut(s) 449, 836
BpuMI CCSGG 5 cut(s) 209, 217, 218, 616, 925
BsaJI CCNNGG 5 cut(s) 9, 184, 216, 217, 576
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 3 cut(s) 190, 458, 820
Bse1I ACTGG 2 cut(s) 60, 525
Bse21I CCTNAGG 1 cut(s) 159
Bse3DI GCAATG 2 cut(s) 237, 757
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 5 cut(s) 9, 184, 216, 217, 576
BseGI GGATG 1 cut(s) 938
BseLI CCNNNNNNNGG 3 cut(s) 190, 458, 820
BseMI GCAATG 2 cut(s) 237, 757
BseMII CTCAG 2 cut(s) 75, 597
BseNI ACTGG 2 cut(s) 60, 525
BseRI GAGGAG 1 cut(s) 934
BseSI GKGCMC 1 cut(s) 827
BseXI GCAGC 2 cut(s) 127, 130
BsgI GTGCAG 2 cut(s) 485, 704
BshFI GGCC 3 cut(s) 183, 358, 581
BshNI GGYRCC 1 cut(s) 824
BsiHKCI CYCGRG 1 cut(s) 216
BsiSI CCGG 6 cut(s) 208, 217, 343, 409, 615, 924
BslI CCNNNNNNNGG 3 cut(s) 190, 458, 820
BsmAI GTCTC 2 cut(s) 665, 812
BsmBI CGTCTC 1 cut(s) 812
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 3 cut(s) 183, 358, 581
BsoBI CYCGRG 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 827
Bsp143I GATC 4 cut(s) 154, 496, 618, 635
Bsp19I CCATGG 1 cut(s) 576
BspACI CCGC 3 cut(s) 250, 385, 853
BspANI GGCC 3 cut(s) 183, 358, 581
BspCNI CTCAG 2 cut(s) 74, 598
BspLI GGNNCC 2 cut(s) 15, 826
BspOI GCTAGC 1 cut(s) 575
BspPI GGATC 3 cut(s) 149, 626, 643
BspT107I GGYRCC 1 cut(s) 824
BspTI CTTAAG 1 cut(s) 869
BsrBI CCGCTC 1 cut(s) 385
BsrDI GCAATG 2 cut(s) 237, 757
BsrI ACTGG 2 cut(s) 60, 525
BssECI CCNNGG 5 cut(s) 9, 184, 216, 217, 576
BssMI GATC 4 cut(s) 154, 496, 618, 635
BssSI CACGAG 1 cut(s) 294
BssT1I CCWWGG 1 cut(s) 576
Bst2BI CACGAG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 3 cut(s) 229, 682, 730
Bst6I CTCTTC 2 cut(s) 23, 628
BstAFI CTTAAG 1 cut(s) 869
BstC8I GCNNGC 2 cut(s) 6, 573
BstDEI CTNAG 4 cut(s) 61, 112, 159, 606
BstDSI CCRYGG 2 cut(s) 9, 576
BstF5I GGATG 1 cut(s) 938
BstH2I RGCGCY 1 cut(s) 294
BstHHI GCGC 3 cut(s) 130, 293, 972
BstKTI GATC 4 cut(s) 157, 499, 621, 638
BstMAI GTCTC 2 cut(s) 665, 812
BstMBI GATC 4 cut(s) 154, 496, 618, 635
BstMWI GCNNNNNNNGC 3 cut(s) 256, 464, 572
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 6 cut(s) 183, 207, 215, 216, 614, 923
BstSLI GKGCMC 1 cut(s) 827
BstV1I GCAGC 2 cut(s) 127, 130
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 2 cut(s) 618, 635
BstYI RGATCY 2 cut(s) 618, 635
Bsu36I CCTNAGG 1 cut(s) 159
BsuRI GGCC 3 cut(s) 183, 358, 581
BtgI CCRYGG 2 cut(s) 9, 576
BtsCI GGATG 1 cut(s) 938
BtsIMutI CAGTG 4 cut(s) 53, 234, 678, 828
Cac8I GCNNGC 2 cut(s) 6, 573
CfoI GCGC 3 cut(s) 130, 293, 972
Cfr13I GGNCC 1 cut(s) 13
Cfr9I CCCGGG 1 cut(s) 216
Csp6I GTAC 1 cut(s) 881
CviAII CATG 2 cut(s) 505, 577
CviQI GTAC 1 cut(s) 881
DdeI CTNAG 4 cut(s) 61, 112, 159, 606
DpnI GATC 4 cut(s) 156, 498, 620, 637
DpnII GATC 4 cut(s) 154, 496, 618, 635
EaeI YGGCCR 1 cut(s) 579
Eam1104I CTCTTC 2 cut(s) 23, 628
EarI CTCTTC 2 cut(s) 23, 628
Eco130I CCWWGG 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 3 cut(s) 192, 582, 770
Eco81I CCTNAGG 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 576
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 2 cut(s) 508, 580
FatI CATG 2 cut(s) 504, 576
FauI CCCGC 1 cut(s) 378
FblI GTMKAC 2 cut(s) 742, 792
Fnu4HI GCNGC 3 cut(s) 141, 144, 854
FokI GGATG 1 cut(s) 925
Fsp4HI GCNGC 3 cut(s) 141, 144, 854
FspBI CTAG 3 cut(s) 572, 639, 705
GlaI GCGC 3 cut(s) 129, 292, 971
GluI GCNGC 3 cut(s) 141, 144, 854
GsuI CTGGAG 2 cut(s) 480, 542
HaeII RGCGCY 1 cut(s) 294
HaeIII GGCC 3 cut(s) 183, 358, 581
HapII CCGG 6 cut(s) 208, 217, 343, 409, 615, 924
HhaI GCGC 3 cut(s) 130, 293, 972
Hin1II CATG 2 cut(s) 508, 580
Hin6I GCGC 3 cut(s) 128, 291, 970
HinP1I GCGC 3 cut(s) 128, 291, 970
HincII GTYRAC 3 cut(s) 202, 351, 793
HindII GTYRAC 3 cut(s) 202, 351, 793
HinfI GANTC 9 cut(s) 33, 59, 98, 212, 448, 526, 673, 696, 713
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 6 cut(s) 208, 217, 343, 409, 615, 924
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 5 cut(s) 13, 202, 351, 743, 793
Hpy188I TCNGA 5 cut(s) 64, 103, 304, 766, 957
Hpy188III TCNNGA 3 cut(s) 37, 428, 800
Hpy8I GTNNAC 5 cut(s) 13, 202, 351, 743, 793
HpyAV CCTTC 3 cut(s) 311, 794, 806
HpyCH4III ACNGT 3 cut(s) 229, 682, 730
HpyCH4V TGCA 5 cut(s) 299, 417, 442, 502, 685
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 464, 572
HpyF3I CTNAG 4 cut(s) 61, 112, 159, 606
Hsp92II CATG 2 cut(s) 508, 580
HspAI GCGC 3 cut(s) 128, 291, 970
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 4 cut(s) 154, 496, 618, 635
LmnI GCTCC 2 cut(s) 135, 865
Lsp1109I GCAGC 2 cut(s) 127, 130
LweI GCATC 3 cut(s) 237, 308, 476
MaeI CTAG 3 cut(s) 572, 639, 705
MaeIII GTNAC 1 cut(s) 106
MalI GATC 4 cut(s) 156, 498, 620, 637
MbiI CCGCTC 1 cut(s) 385
MboI GATC 4 cut(s) 154, 496, 618, 635
MboII GAAGA 4 cut(s) 40, 468, 615, 924
MflI RGATCY 2 cut(s) 618, 635
MhlI GDGCHC 1 cut(s) 827
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 2 cut(s) 264, 646
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 4 cut(s) 53, 107, 667, 690
MmeI TCCRAC 1 cut(s) 690
Mox20I TGGCCA 1 cut(s) 581
MscI TGGCCA 1 cut(s) 581
MseI TTAA 3 cut(s) 92, 201, 870
MslI CAYNNNNRTG 1 cut(s) 242
Msp20I TGGCCA 1 cut(s) 581
MspCI CTTAAG 1 cut(s) 869
MspI CCGG 6 cut(s) 208, 217, 343, 409, 615, 924
MspR9I CCNGG 6 cut(s) 185, 209, 217, 218, 616, 925
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 3 cut(s) 256, 464, 572
NciI CCSGG 5 cut(s) 209, 217, 218, 616, 925
NcoI CCATGG 1 cut(s) 576
NdeII GATC 4 cut(s) 154, 496, 618, 635
NheI GCTAGC 1 cut(s) 571
NlaIII CATG 2 cut(s) 508, 580
NlaIV GGNNCC 2 cut(s) 15, 826
PctI GAATGC 1 cut(s) 536
PfeI GAWTC 5 cut(s) 33, 212, 448, 526, 713
PflMI CCANNNNNTGG 1 cut(s) 458
PfoI TCCNGGA 1 cut(s) 207
PkrI GCNGC 3 cut(s) 142, 145, 855
PleI GAGTC 4 cut(s) 53, 106, 667, 690
PpsI GAGTC 4 cut(s) 53, 106, 667, 690
PsiI TTATAA 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 15, 826
PspPI GGNCC 1 cut(s) 13
PsuI RGATCY 2 cut(s) 618, 635
RsaI GTAC 1 cut(s) 882
RsaNI GTAC 1 cut(s) 881
RseI CAYNNNNRTG 1 cut(s) 242
SalI GTCGAC 1 cut(s) 791
SaqAI TTAA 3 cut(s) 92, 201, 870
SatI GCNGC 3 cut(s) 141, 144, 854
Sau3AI GATC 4 cut(s) 154, 496, 618, 635
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 4 cut(s) 53, 107, 667, 690
ScrFI CCNGG 6 cut(s) 185, 209, 217, 218, 616, 925
SduI GDGCHC 1 cut(s) 827
SfaNI GCATC 3 cut(s) 237, 308, 476
SinI GGWCC 1 cut(s) 13
SmaI CCCGGG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 3 cut(s) 428, 815, 869
SmoI CTYRAG 3 cut(s) 428, 815, 869
Sse9I AATT 2 cut(s) 264, 646
SsiI CCGC 3 cut(s) 250, 385, 853
SspI AATATT 1 cut(s) 273
SspMI CTAG 3 cut(s) 572, 639, 705
StyD4I CCNGG 6 cut(s) 183, 207, 215, 216, 614, 923
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 3 cut(s) 229, 682, 730
TaqI TCGA 3 cut(s) 529, 774, 792
TasI AATT 2 cut(s) 264, 646
TatI WGTACW 1 cut(s) 880
TauI GCSGC 1 cut(s) 856
TfiI GAWTC 5 cut(s) 33, 212, 448, 526, 713
Tru1I TTAA 3 cut(s) 92, 201, 870
Tru9I TTAA 3 cut(s) 92, 201, 870
TscAI CASTG 4 cut(s) 60, 234, 685, 835
TseI GCWGC 2 cut(s) 140, 143
TspDTI ATGAA 1 cut(s) 95
TspMI CCCGGG 1 cut(s) 216
TspRI CASTG 4 cut(s) 60, 234, 685, 835
Van91I CCANNNNNTGG 1 cut(s) 458
Vha464I CTTAAG 1 cut(s) 869
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 646
XcmI CCANNNNNNNNNTGG 1 cut(s) 574
XmaI CCCGGG 1 cut(s) 216
XmiI GTMKAC 2 cut(s) 742, 792
XspI CTAG 3 cut(s) 572, 639, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.