Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005366.1

Orthogroup ID

OG0000570

Physical Location & Seq

Genomic Coordinates Forward (+)

83421 .. 83991

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005366.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgcgaagaaattcaatggctgtgaacatgtcaaacacatcacaggtgatagctgatgatttgaatgtgaggctggactattttgaaaacagagtggcatttgcacggttgttgtttcctgcggaagccaagcttgctatggaaatggcggatcatccaacatcagagtctagtgggaacttacgagaggtcgaattgaatgaaacaccctctgtacgatccgaaagactccacgaaaaattgcatgcgctaattaaaacaggtatggtcattttaccactcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank_2 BTB DUF3420 NPR1_like_C

Protein Analysis

95

Amino Acids

10.74

Weight (kDa)

5.88

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45110 AT5G45110
fragaria_vesca	FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica	MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica	Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis	pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis	RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata	RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora	Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa	Rorug02G0432800 Rorug05G0051600
rosa_samantha	Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana	Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	122, 149
AclWI	GGATC	2 cut(s)	159, 213
AcsI	RAATTY	1 cut(s)	10
AfaI	GTAC	1 cut(s)	216
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	15, 64, 86, 199
AluBI	AGCT	2 cut(s)	53, 133
AluI	AGCT	2 cut(s)	53, 133
AlwI	GGATC	2 cut(s)	159, 213
ApoI	RAATTY	1 cut(s)	10
Asp700I	GAANNNNTTC	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	58
BfaI	CTAG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	151, 218
BspACI	CCGC	2 cut(s)	122, 149
BspPI	GGATC	2 cut(s)	159, 213
BssMI	GATC	2 cut(s)	151, 218
Bst4CI	ACNGT	1 cut(s)	108
BstC8I	GCNNGC	2 cut(s)	135, 246
BstF5I	GGATG	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	154, 221
BstMBI	GATC	2 cut(s)	151, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	2 cut(s)	31, 248
BtsCI	GGATG	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	135, 246
CfoI	GCGC	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	215
CviAII	CATG	3 cut(s)	28, 245, 285
CviJI	RGCY	5 cut(s)	20, 53, 73, 128, 133
CviKI_1	RGCY	5 cut(s)	20, 53, 73, 128, 133
CviQI	GTAC	1 cut(s)	215
DpnI	GATC	2 cut(s)	153, 220
DpnII	GATC	2 cut(s)	151, 218
EciI	GGCGGA	1 cut(s)	164
FaeI	CATG	3 cut(s)	31, 248, 288
FaiI	YATR	5 cut(s)	29, 140, 246, 266, 286
FalI	AAGNNNNNCTT	2 cut(s)	117, 149
FatI	CATG	3 cut(s)	27, 244, 284
FokI	GGATG	1 cut(s)	141
FspBI	CTAG	1 cut(s)	171
GlaI	GCGC	1 cut(s)	249
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	3 cut(s)	31, 248, 288
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	2 cut(s)	167, 228
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	166, 223
Hpy8I	GTNNAC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4V	TGCA	2 cut(s)	104, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92II	CATG	3 cut(s)	31, 248, 288
HspAI	GCGC	1 cut(s)	248
Kzo9I	GATC	2 cut(s)	151, 218
LpnPI	CCDG	4 cut(s)	29, 59, 132, 246
MaeI	CTAG	1 cut(s)	171
MalI	GATC	2 cut(s)	153, 220
MboI	GATC	2 cut(s)	151, 218
MboII	GAAGA	1 cut(s)	18
MluCI	AATT	4 cut(s)	10, 194, 239, 252
MlyI	GAGTC	2 cut(s)	176, 222
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	63, 181, 220
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	283
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	2 cut(s)	151, 218
NlaIII	CATG	3 cut(s)	31, 248, 288
NspI	RCATGY	2 cut(s)	31, 248
PaeI	GCATGC	1 cut(s)	248
PciI	ACATGT	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	10
PleI	GAGTC	2 cut(s)	175, 222
PpsI	GAGTC	2 cut(s)	175, 222
PscI	ACATGT	1 cut(s)	27
RsaI	GTAC	1 cut(s)	216
RsaNI	GTAC	1 cut(s)	215
RseI	CAYNNNNRTG	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	151, 218
SchI	GAGTC	2 cut(s)	176, 222
SetI	ASST	5 cut(s)	48, 55, 135, 192, 265
SmiMI	CAYNNNNRTG	1 cut(s)	283
SphI	GCATGC	1 cut(s)	248
Sse9I	AATT	4 cut(s)	10, 194, 239, 252
SsiI	CCGC	2 cut(s)	122, 149
SspMI	CTAG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	108
TaqI	TCGA	1 cut(s)	192
TasI	AATT	4 cut(s)	10, 194, 239, 252
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TspDTI	ATGAA	1 cut(s)	216
XapI	RAATTY	1 cut(s)	10
XceI	RCATGY	2 cut(s)	31, 248
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.