Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000570

Physical Location & Seq

Genomic Coordinates Reverse (-)

71217066 .. 71231991

Gene Structure 14926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG506700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2889 bp

ATGGATCATTTGAATGACCTTTCGTCATCTTTGAGCTTTGCGTCTTCTTATCTATCGAATGGATCAAGTGGTAACTATGTATCTGCCTCGGCCAATTCTCCAAGTACAGAGCATTTGAGTCTGAGCAGACTCAGTGATAACCTGGAGAGGCTGTTGCTTGATGCTCAATATGACTATGGTGATGCGGACATTGTTGTTGAAGGGGTCGCGGTTGGTGTCAATCGGTGTATATTGGCTGCACGCAGTCAGTTTTTCCACGAGCTTTTTAAGAAGGGGAATGATGATTCGAAGAAGGAAGGTAAACCGCAGTATATGATGTCTGAATTGGTTCCTTTCGGTGGAGTTGGCTATGAAGCATTCAAGGTAGTCTTGAACTACTTGTACACTGGAAAACTTAAGCCACCGCCTCCAGAAGTATCAACTGTATCAACATGTGTTGATGATAATTGTGCCCATGATGCATGCGGCCCTGCTATTAATTACGCTGTGGAATTAATGTATGCTGCTGCCACTTTCCAGATGAAAGAACTTGTTCATGTTGTGCAGCGCCGGCTTACTAACTTTGTCGAGAAAGCTCATGTTGAAGACGTGATCCCGATTCTTGTAGCCTCTTTCCACTGCAAACAGAGTCAGCTGTTGTCACACTGCATCCAGAGGGTAGCAAAGTCAGATCTTGACAATGTGGTTCTAGAAAAAGAGCTTCCTCATGAAGTTTTTGATATTATCAAATCACTCCGTCTCGAATCTCAGCAAATGGATGAATCAAGTATGCTGGAAATGGAGCCAGGGAAGGAAAAGAGGCTTAAAAGCATCGGGAGAATCCACAAGGCATTAGACTCTGATGATGTTGAACTGGTTACTCTTCTTCTAAAAGAGTCTGATTCTATTTCATTAGATGATGCTAATGCTCTCCACTATGCTGTTGCATACTGTGATCCAAAAATTGTTAAGGAGGTTCTTGGTCTACGTCTGGCGAATACCAATCTTCGAAATGCCCGAGGACATACTGTACTTCATGTGGCTGCAAGGCGTAAGGAACCCGCAGTCCTAGTTCCTCTTCTGAACAGCGGAGCCTCTGCCTTAGAAACTACATTAGATGGTCAAAGTGCTGTTGCAATTTGCCGGAGGTTGACTAGACCAAAGGATTATAATGAGAACACAAAGCAGGGAGAGGTGTCTAACAAAGACCGAATATGCATAGATCTTCTAGAGAGAGAGATGCAAAGAAATTCGATGGCTGTGGACATGTCAAACACATCACAGGTGATAGCTGATGATTTGAATGTGAGGCTGGACTATTTTGAAAATAGAGTGGCATTTGCACGGTTGTTGTTTCCTGCTGAAGCCAAGCTTGCTATGGAAATGGCGGATCATCCAACATCAGGGTACACTGGCCTTTTAGCATCAAAAGGCTCTAGTGGGAACTTACGAGAGGTCGATTTGAATGAAACACCCTCTGTACGATCCAAAAGACTCCAAGAAAAATTGCATGCGCTAATTAAAACAGTGCAAATGGGACGGCGCTTCTTCCCCCATTACTCAGAAGTTCTTGATAAGTTTCTGGATGATGAGATGGATATGGCTGATTACTTCCTTGAGAAAGGAACTCCTGAAGAGCAGAAAAGCAAGAAGATGCGCTTCTTGGAGCTTAAAGATGATGTACAGAAAGCATTTTGCAGGGATGTGGCTGAAAAACGGGGGCCAGATTTGACGGCCTCATCATCATCCTCATCTTCTCCGAAGGAGGGTGTTAATCATATAAGATATTTGAGAGCTTGCATATCCCATGCTCTTGCTTCATTAGGCATCGAACCCAAGTCAAAGGGTCTCTTTTTATGGGTGGTTTATGCTTCTAGAGGGAGAGAGATGCGAAGAAATTCAATGGCTGTGAACATGTCAAACACATCACAGGTGATAGCTGATGATTTGAATGTGAGGCTGGACTATTTTGAAAACAGAGTGGCATTTGCACGGTTGTTGTTTCCTGCGGAAGCCAAGCTTGCTATGGAAATGGCGGATCATCCAACATCAGAGTCTAGTGGGAACTTACGAGAGGTCGAATTGAATGAAACACCCTCTGTACGATCCGAAAGACTCCACGAAAAATTGCATGCGCTAATTAAAACAGTGCAAATGGGACGGCGCTTCTTCCCCCATTGCTCAGAAGTTCTTGATAAGTTTCTGGATGATGAGATGGATATGGCTGATTACTTCCTTGAGAAAGGAACTCCTGAAGAGCAGAAAAACAAGAAGATGCGCTTCTTGGAGCTTAAAGATGATGTACAGAAAGCATTTTGCAGGGATGTGGCTGAAAAACGGGGGCCAGATTTGACGGCCTCATCATCATCCTCATCTTCTCCGAAGGAGGGTGTTAATCGTAAGGTTAGGAAAAGGGTGGTTTATGCTTCTAGAGGGAGAGAGATGCGAAGAAATTCAATGGCTGTGAACATGTCAAACACATCACAGGTGATAGCTGATGATTTGAATGTGAGGCTGGACTATTTTGAAAACAGAGTGGCATTTGCACGGTTGTTATTTCCTGCGGAAGCCAAGCTTGCTATGGAAATGGCGGATCATCCAACATCAGAGTCTAGTGGGAACTTACGAGAGGTCGATTTGAATGAAACACCCTCTGTACGATCCGAAAGACTCCACGAAAAATTGCGAGCCCTAATTAAAACAGTGGATATGGGACGGCGCTTCTTCCCCCATTGCTCAGAAGTTCTTGATAAGTTTCTGGATGATGAGACGGACATGGCTGATTACTTCCTTGAAAAAGGAACTCCTGAAGAGGAGAAAAACAAGAAGAGGATGCGCTTCATGGAACTTAAAGATGATATACAGAAGGCATTTTGCAGGGATGTGGCTGAAAACCAGGGTCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008144 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009627 GO:0009814 GO:0009816 GO:0009817 GO:0009966 GO:0009987 GO:0010498 GO:0010646 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0030162 GO:0030163 GO:0031406 GO:0031461 GO:0031625 GO:0032991 GO:0033293 GO:0035821 GO:0036094 GO:0042562 GO:0042742 GO:0043161 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043207 GO:0043632 GO:0044003 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051246 GO:0051603 GO:0051701 GO:0051704 GO:0051707 GO:0051817 GO:0052031 GO:0052173 GO:0052200 GO:0052255 GO:0052552 GO:0052553 GO:0052555 GO:0052556 GO:0052558 GO:0052559 GO:0052564 GO:0052572 GO:0060255 GO:0065007 GO:0071704 GO:0075136 GO:0080090 GO:0080185 GO:0097159 GO:0098542 GO:1901149 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234 GO:2000022

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Ank_2 BTB DUF3420 NPR1_like_C

Protein Analysis

962

Amino Acids

108.6

Weight (kDa)

5.96

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BTB	PF00651	56 - 143	1.3e-10	BTB/POZ domain
DUF3420	PF11900	224 - 275	9.4e-10	Domain of unknown function (DUF3420)
Ank_2	PF12796	275 - 359	8.7e-07	Ankyrin repeats (3 copies)
NPR1_like_C	PF12313	375 - 577	4.6e-75	NPR1/NIM1 like defence protein C terminal
NPR1_like_C	PF12313	621 - 784	4.5e-54	NPR1/NIM1 like defence protein C terminal
NPR1_like_C	PF12313	806 - 958	5.7e-51	NPR1/NIM1 like defence protein C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45110 AT5G45110
fragaria_vesca	FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_3g11950 FvH4_6g38820 FvH4_6g38820 FvH4_6g38821 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830 FvH4_6g38830
malus_domestica	MD05G1256300.v1.1 MD05G1256400.v1.1 MD09G1146600.v1.1 MD10G1236700.v1.1 MD10G1236800.v1.1 MD17G1133300.v1.1
prunus_persica	Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.3G178800_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107500_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1 Prupe.4G107800_v2.0.a1
pyrus_communis	pycom05g23540 pycom05g23550 pycom05g23560 pycom05g23570 pycom09g06690 pycom10g19800 pycom17g12780
rosa_chinensis	RchiOBHm_Chr2g0152421 RchiOBHm_Chr2g0152431 RchiOBHm_Chr2g0152441 RchiOBHm_Chr5g0019531
rosa_laevigata	RLG00000020632 RLG00000020633 RLG00000032453
rosa_multiflora	Rmu_co8414461.1_g000001 Rmu_sc0002759.1_g000050 Rmu_sc0005366.1_g000015 Rmu_sc0005366.1_g000016 Rmu_sc0005366.1_g000017 Rmu_sc0005366.1_g000020 Rmu_sc0005366.1_g000022
rosa_roxburghii	Rroxscaffold_1G00058530 Rroxscaffold_2G00095720 Rroxscaffold_2G00095730 Rroxscaffold_2G00095740
rosa_rugosa	Rorug02G0432800 Rorug05G0051600
rosa_samantha	Rh2AG494300 Rh2AG494400 Rh2AG494500 Rh2BG506600 Rh2BG506700 Rh2CG480600 Rh2CG480700 Rh2DG517700 Rh2DG517800 Rh2DG517900 Rh5AG142400 Rh5BG140800 Rh5CG152900 Rh5DG141500
rosa_wichuraiana	Rw2G040670 Rw2G040680 Rw2G040690 Rw5G012600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1149
AccI	GTMKAC	1 cut(s)	964
AccII	CGCG	1 cut(s)	209
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	3 cut(s)	1228, 1876, 2431
AcuI	CTGAAG	4 cut(s)	1362, 1632, 2253, 2808
AfaI	GTAC	9 cut(s)	106, 383, 1011, 1388, 1461, 1662, 2082, 2283, 2637
AfiI	CCNNNNNNNGG	4 cut(s)	338, 1382, 1745, 2366
AflII	CTTAAG	1 cut(s)	395
AflIII	ACRYGT	4 cut(s)	431, 1245, 1893, 2448
AhdI	GACNNNNNGTC	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	589
AjnI	CCWGG	3 cut(s)	141, 784, 2874
AloI	GAACNNNNNNTCC	2 cut(s)	1029, 1061
Alw26I	GTCTC	3 cut(s)	743, 1832, 2741
Ama87I	CYCGRG	1 cut(s)	996
AoxI	GGCC	7 cut(s)	90, 466, 1393, 1700, 1713, 2321, 2334
ApeKI	GCWGC	5 cut(s)	236, 503, 506, 544, 1022
ApoI	RAATTY	3 cut(s)	1228, 1876, 2431
AseI	ATTAAT	2 cut(s)	477, 494
Asp700I	GAANNNNTTC	4 cut(s)	327, 531, 1876, 2431
AspLEI	GCGC	9 cut(s)	549, 1495, 1524, 1638, 2116, 2145, 2259, 2700, 2817
AspS9I	GGNCC	3 cut(s)	467, 1700, 2321
AsuHPI	GGTGA	4 cut(s)	191, 1276, 1924, 2479
AsuII	TTCGAA	2 cut(s)	287, 988
AvaI	CYCGRG	1 cut(s)	996
BaeGI	GKGCMC	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	2671
BauI	CACGAG	1 cut(s)	257
BbsI	GAAGAC	2 cut(s)	36, 591
BbvI	GCAGC	5 cut(s)	223, 490, 493, 556, 1009
BccI	CCATC	4 cut(s)	1091, 1228, 1567, 2188
BceAI	ACGGC	5 cut(s)	1535, 1728, 2156, 2349, 2711
BciT130I	CCWGG	3 cut(s)	143, 786, 2876
BcoDI	GTCTC	3 cut(s)	743, 1832, 2741
BfaI	CTAG	9 cut(s)	689, 1049, 1134, 1208, 1416, 1854, 2037, 2409, 2592
BfoI	RGCGCY	4 cut(s)	550, 1525, 2146, 2701
BfrI	CTTAAG	1 cut(s)	395
BglII	AGATCT	2 cut(s)	670, 1201
BisI	GCNGC	6 cut(s)	237, 466, 504, 507, 545, 1023
BlsI	GCNGC	6 cut(s)	238, 467, 505, 508, 546, 1024
Bme1390I	CCNGG	3 cut(s)	143, 786, 2876
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	996
BmgBI	CACGTC	1 cut(s)	589
BmgT120I	GGNCC	3 cut(s)	467, 1700, 2321
BmiI	GGNNCC	6 cut(s)	330, 783, 1038, 1072, 1701, 2322
BmrFI	CCNGG	3 cut(s)	143, 786, 2876
BpiI	GAAGAC	2 cut(s)	36, 591
BpmI	CTGGAG	2 cut(s)	164, 393
Bpu14I	TTCGAA	2 cut(s)	287, 988
BpuEI	CTTGAG	2 cut(s)	1616, 2237
BsaI	GGTCTC	1 cut(s)	1832
BsaJI	CCNNGG	4 cut(s)	87, 785, 997, 2875
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	338, 1382, 1745, 2366
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	3 cut(s)	391, 858, 1396
Bse3DI	GCAATG	2 cut(s)	2155, 2710
BseBI	CCWGG	3 cut(s)	143, 786, 2876
BseDI	CCNNGG	4 cut(s)	87, 785, 997, 2875
BseLI	CCNNNNNNNGG	4 cut(s)	338, 1382, 1745, 2366
BseMI	GCAATG	2 cut(s)	2155, 2710
BseMII	CTCAG	6 cut(s)	113, 145, 761, 1554, 2175, 2730
BseNI	ACTGG	3 cut(s)	391, 858, 1396
BseRI	GAGGAG	1 cut(s)	2807
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	5 cut(s)	223, 490, 493, 556, 1009
BsgI	GTGCAG	2 cut(s)	222, 563
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	7 cut(s)	92, 468, 1395, 1702, 1715, 2323, 2336
BsiHKCI	CYCGRG	1 cut(s)	996
BsiSI	CCGG	2 cut(s)	550, 1123
BslFI	GGGAC	3 cut(s)	1530, 2151, 2706
BslI	CCNNNNNNNGG	4 cut(s)	338, 1382, 1745, 2366
BsmAI	GTCTC	3 cut(s)	743, 1832, 2741
BsmBI	CGTCTC	2 cut(s)	743, 2741
BsmFI	GGGAC	3 cut(s)	1530, 2151, 2706
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	7 cut(s)	92, 468, 1395, 1702, 1715, 2323, 2336
Bso31I	GGTCTC	1 cut(s)	1832
BsoBI	CYCGRG	1 cut(s)	996
Bsp119I	TTCGAA	2 cut(s)	287, 988
Bsp1286I	GDGCHC	2 cut(s)	454, 2671
Bsp1407I	TGTACA	3 cut(s)	381, 1660, 2281
BspANI	GGCC	7 cut(s)	92, 468, 1395, 1702, 1715, 2323, 2336
BspCNI	CTCAG	6 cut(s)	114, 144, 760, 1553, 2174, 2729
BspFNI	CGCG	1 cut(s)	209
BspHI	TCATGA	1 cut(s)	706
BspLI	GGNNCC	6 cut(s)	330, 783, 1038, 1072, 1701, 2322
BspQI	GCTCTTC	2 cut(s)	1608, 2229
BspT104I	TTCGAA	2 cut(s)	287, 988
BspTI	CTTAAG	1 cut(s)	395
BspTNI	GGTCTC	1 cut(s)	1832
BsrDI	GCAATG	2 cut(s)	2155, 2710
BsrFI	RCCGGY	1 cut(s)	549
BsrGI	TGTACA	3 cut(s)	381, 1660, 2281
BsrI	ACTGG	3 cut(s)	391, 858, 1396
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	4 cut(s)	87, 785, 997, 2875
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst2UI	CCWGG	3 cut(s)	143, 786, 2876
Bst4CI	ACNGT	9 cut(s)	424, 932, 1009, 1326, 1507, 1974, 2128, 2529, 2683
Bst6I	CTCTTC	6 cut(s)	867, 1062, 1608, 2229, 2784, 2801
BstAFI	CTTAAG	1 cut(s)	395
BstAUI	TGTACA	3 cut(s)	381, 1660, 2281
BstBI	TTCGAA	2 cut(s)	287, 988
BstDEI	CTNAG	7 cut(s)	122, 131, 747, 1081, 1540, 2161, 2716
BstFNI	CGCG	1 cut(s)	209
BstH2I	RGCGCY	4 cut(s)	550, 1525, 2146, 2701
BstHHI	GCGC	9 cut(s)	549, 1495, 1524, 1638, 2116, 2145, 2259, 2700, 2817
BstMAI	GTCTC	3 cut(s)	743, 1832, 2741
BstMWI	GCNNNNNNNGC	5 cut(s)	458, 550, 1352, 2000, 2555
BstNI	CCWGG	3 cut(s)	143, 786, 2876
BstNSI	RCATGY	7 cut(s)	435, 465, 1249, 1493, 1897, 2114, 2452
BstSCI	CCNGG	3 cut(s)	141, 784, 2874
BstSLI	GKGCMC	1 cut(s)	454
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	5 cut(s)	223, 490, 493, 556, 1009
BstV2I	GAAGAC	2 cut(s)	36, 591
BstX2I	RGATCY	2 cut(s)	670, 1201
BstYI	RGATCY	2 cut(s)	670, 1201
BsuRI	GGCC	7 cut(s)	92, 468, 1395, 1702, 1715, 2323, 2336
BtrI	CACGTC	1 cut(s)	589
BtsI	GCAGTG	2 cut(s)	616, 643
BtsIMutI	CAGTG	8 cut(s)	139, 384, 616, 643, 1389, 1512, 2133, 2688
CciI	TCATGA	1 cut(s)	706
CfoI	GCGC	9 cut(s)	549, 1495, 1524, 1638, 2116, 2145, 2259, 2700, 2817
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	3 cut(s)	467, 1700, 2321
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	9 cut(s)	105, 382, 1010, 1387, 1460, 1661, 2081, 2282, 2636
CviQI	GTAC	9 cut(s)	105, 382, 1010, 1387, 1460, 1661, 2081, 2282, 2636
DdeI	CTNAG	7 cut(s)	122, 131, 747, 1081, 1540, 2161, 2716
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	6 cut(s)	867, 1062, 1608, 2229, 2784, 2801
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	6 cut(s)	867, 1062, 1608, 2229, 2784, 2801
EciI	GGCGGA	3 cut(s)	1382, 2030, 2585
Eco24I	GRGCYC	1 cut(s)	2671
Eco31I	GGTCTC	1 cut(s)	1832
Eco57I	CTGAAG	4 cut(s)	1362, 1632, 2253, 2808
Eco88I	CYCGRG	1 cut(s)	996
EcoRII	CCWGG	3 cut(s)	141, 784, 2874
EcoT22I	ATGCAT	2 cut(s)	463, 1199
EcoT38I	GRGCYC	1 cut(s)	2671
Esp3I	CGTCTC	2 cut(s)	743, 2741
FaqI	GGGAC	3 cut(s)	1530, 2151, 2706
FauI	CCCGC	1 cut(s)	1048
FblI	GTMKAC	1 cut(s)	964
Fnu4HI	GCNGC	6 cut(s)	237, 466, 504, 507, 545, 1023
FriOI	GRGCYC	1 cut(s)	2671
Fsp4HI	GCNGC	6 cut(s)	237, 466, 504, 507, 545, 1023
FspBI	CTAG	9 cut(s)	689, 1049, 1134, 1208, 1416, 1854, 2037, 2409, 2592
GlaI	GCGC	9 cut(s)	548, 1494, 1523, 1637, 2115, 2144, 2258, 2699, 2816
GluI	GCNGC	6 cut(s)	237, 466, 504, 507, 545, 1023
GsuI	CTGGAG	2 cut(s)	164, 393
HaeII	RGCGCY	4 cut(s)	550, 1525, 2146, 2701
HaeIII	GGCC	7 cut(s)	92, 468, 1395, 1702, 1715, 2323, 2336
HapII	CCGG	2 cut(s)	550, 1123
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	9 cut(s)	549, 1495, 1524, 1638, 2116, 2145, 2259, 2700, 2817
Hin6I	GCGC	9 cut(s)	547, 1493, 1522, 1636, 2114, 2143, 2257, 2698, 2815
HinP1I	GCGC	9 cut(s)	547, 1493, 1522, 1636, 2114, 2143, 2257, 2698, 2815
HincII	GTYRAC	1 cut(s)	1131
HindII	GTYRAC	1 cut(s)	1131
HindIII	AAGCTT	3 cut(s)	1349, 1997, 2552
HpaII	CCGG	2 cut(s)	550, 1123
HphI	GGTGA	4 cut(s)	191, 1276, 1924, 2479
Hpy166II	GTNNAC	8 cut(s)	302, 384, 965, 1131, 1243, 1389, 1891, 2446
Hpy8I	GTNNAC	8 cut(s)	302, 384, 965, 1131, 1243, 1389, 1891, 2446
HpyAV	CCTTC	8 cut(s)	194, 265, 286, 290, 784, 1735, 2356, 2839
HpyCH4III	ACNGT	9 cut(s)	424, 932, 1009, 1326, 1507, 1974, 2128, 2529, 2683
HpyCH4IV	ACGT	2 cut(s)	588, 967
HpyF10VI	GCNNNNNNNGC	5 cut(s)	458, 550, 1352, 2000, 2555
HpyF3I	CTNAG	7 cut(s)	122, 131, 747, 1081, 1540, 2161, 2716
HpySE526I	ACGT	2 cut(s)	588, 967
HspAI	GCGC	9 cut(s)	547, 1493, 1522, 1636, 2114, 2143, 2257, 2698, 2815
KroI	GCCGGC	1 cut(s)	549
KroNI	GCCGGC	1 cut(s)	551
LguI	GCTCTTC	2 cut(s)	1608, 2229
LmnI	GCTCC	4 cut(s)	781, 1070, 1645, 2266
Lsp1109I	GCAGC	5 cut(s)	223, 490, 493, 556, 1009
MaeI	CTAG	9 cut(s)	689, 1049, 1134, 1208, 1416, 1854, 2037, 2409, 2592
MaeII	ACGT	2 cut(s)	588, 967
MaeIII	GTNAC	3 cut(s)	71, 639, 856
MflI	RGATCY	2 cut(s)	670, 1201
MhlI	GDGCHC	2 cut(s)	454, 2671
MmeI	TCCRAC	3 cut(s)	1400, 2048, 2603
Mph1103I	ATGCAT	2 cut(s)	463, 1199
MroNI	GCCGGC	1 cut(s)	549
MroXI	GAANNNNTTC	4 cut(s)	327, 531, 1876, 2431
MslI	CAYNNNNRTG	1 cut(s)	12
MspA1I	CMGCKG	2 cut(s)	634, 1068
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	2 cut(s)	550, 1123
MspR9I	CCNGG	3 cut(s)	143, 786, 2876
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	3 cut(s)	143, 786, 2876
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	5 cut(s)	458, 550, 1352, 2000, 2555
NaeI	GCCGGC	1 cut(s)	551
NgoMIV	GCCGGC	1 cut(s)	549
NlaIV	GGNNCC	6 cut(s)	330, 783, 1038, 1072, 1701, 2322
NmeAIII	GCCGAG	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	639
NsiI	ATGCAT	2 cut(s)	463, 1199
NspI	RCATGY	7 cut(s)	435, 465, 1249, 1493, 1897, 2114, 2452
NspV	TTCGAA	2 cut(s)	287, 988
PaeI	GCATGC	3 cut(s)	465, 1493, 2114
PagI	TCATGA	1 cut(s)	706
PciI	ACATGT	4 cut(s)	431, 1245, 1893, 2448
PciSI	GCTCTTC	2 cut(s)	1608, 2229
PcsI	WCGNNNNNNNCGW	1 cut(s)	994
PctI	GAATGC	1 cut(s)	356
PdiI	GCCGGC	1 cut(s)	551
PdmI	GAANNNNTTC	4 cut(s)	327, 531, 1876, 2431
PfeI	GAWTC	6 cut(s)	284, 598, 743, 761, 819, 881
PkrI	GCNGC	6 cut(s)	238, 467, 505, 508, 546, 1024
PscI	ACATGT	4 cut(s)	431, 1245, 1893, 2448
PshBI	ATTAAT	2 cut(s)	477, 494
PsiI	TTATAA	1 cut(s)	1149
Psp6I	CCWGG	3 cut(s)	141, 784, 2874
PspGI	CCWGG	3 cut(s)	141, 784, 2874
PspN4I	GGNNCC	6 cut(s)	330, 783, 1038, 1072, 1701, 2322
PspPI	GGNCC	3 cut(s)	467, 1700, 2321
PsrI	GAACNNNNNNTAC	2 cut(s)	365, 397
PsuI	RGATCY	2 cut(s)	670, 1201
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	9 cut(s)	106, 383, 1011, 1388, 1461, 1662, 2082, 2283, 2637
RsaNI	GTAC	9 cut(s)	105, 382, 1010, 1387, 1460, 1661, 2081, 2282, 2636
RseI	CAYNNNNRTG	1 cut(s)	12
SapI	GCTCTTC	2 cut(s)	1608, 2229
SatI	GCNGC	6 cut(s)	237, 466, 504, 507, 545, 1023
Sau96I	GGNCC	3 cut(s)	467, 1700, 2321
ScrFI	CCNGG	3 cut(s)	143, 786, 2876
SduI	GDGCHC	2 cut(s)	454, 2671
SfuI	TTCGAA	2 cut(s)	287, 988
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	3 cut(s)	395, 1595, 2216
SmoI	CTYRAG	3 cut(s)	395, 1595, 2216
SphI	GCATGC	3 cut(s)	465, 1493, 2114
SspMI	CTAG	9 cut(s)	689, 1049, 1134, 1208, 1416, 1854, 2037, 2409, 2592
StyD4I	CCNGG	3 cut(s)	141, 784, 2874
TaaI	ACNGT	9 cut(s)	424, 932, 1009, 1326, 1507, 1974, 2128, 2529, 2683
TaiI	ACGT	2 cut(s)	591, 970
TaqII	GACCGA	1 cut(s)	1203
TatI	WGTACW	5 cut(s)	104, 381, 1009, 1660, 2281
TauI	GCSGC	1 cut(s)	468
TfiI	GAWTC	6 cut(s)	284, 598, 743, 761, 819, 881
TscAI	CASTG	8 cut(s)	139, 391, 623, 650, 1396, 1512, 2133, 2688
TseFI	GTSAC	1 cut(s)	639
TseI	GCWGC	5 cut(s)	236, 503, 506, 544, 1022
Tsp45I	GTSAC	1 cut(s)	639
TspGWI	ACGGA	2 cut(s)	725, 2765
TspRI	CASTG	8 cut(s)	139, 391, 623, 650, 1396, 1512, 2133, 2688
Vha464I	CTTAAG	1 cut(s)	395
VspI	ATTAAT	2 cut(s)	477, 494
XapI	RAATTY	3 cut(s)	1228, 1876, 2431
XbaI	TCTAGA	4 cut(s)	688, 1207, 1853, 2408
XceI	RCATGY	7 cut(s)	435, 465, 1249, 1493, 1897, 2114, 2452
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1354, 2002, 2557
XmiI	GTMKAC	1 cut(s)	964
XmnI	GAANNNNTTC	4 cut(s)	327, 531, 1876, 2431
XspI	CTAG	9 cut(s)	689, 1049, 1134, 1208, 1416, 1854, 2037, 2409, 2592
Zsp2I	ATGCAT	2 cut(s)	463, 1199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.