Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Reverse (-)

10689758 .. 10692831

Gene Structure 3074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G19645.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAGATCAAATCTTACCAAAATCAAGCAGAGTATTTTGTTGAACACTATTTATTAGCAGATCCATTTCTTCCATATACTTCTGTTCTTGTTGGAATCTGTCTTTGCAAATTGGTATATGATCTTACGGAGTTATTCAGCTCAATTCATGTCAAATCATACTCAGCTCTCACAAAAATAAAGAGAATTGAATGGAACAACAGGGGAATTTCTACAGTCCATGCGATCTTTATCTCATTCATGGCATTATACTTTGCGTTCTTCTCTGATTTGTTTTCTGACCAAAGAAGCCTTGAAACCCTTACGGTGTTTCGTAACTCGCCTCTGTCTACCTTTGGTTTAGGAGTATCAGTTGGTTACTTTCTTGCGGATCTTGGAATGATCTTTTGGTTATACCCTTCTTTAGGAGGATCAGAATATATATTACATCACTGCTTATCTGGAACAGCAGTAGCGTATTCTTTGTTCTCTGGAGAGGCTCAGCTTTACACATACATGGTTTTAATCTCTGAAGTGACTACACCAGAGATCAATCTTAGATGGTACCTTGACATTGCTGGTTTGAAACGATCTAAAGCTTATCTTGTTAATGGAGTTGCTATATTCTTTGCTTGGTTGACAGCAAGAATTCTTCTGTTCATCTACATGTTTTACCATGTCTACACACATTATGATCAGGTGATAGAGATGCATACATTCGGTTATCTACTGGTATTTGTTGTACCGATTTCATTGAGTGTCATGAACTTGATCTGGTTTGGTAAGATAGTGAAGGGATTGAAGAAAACTCTTGAGAAAAGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

268

Amino Acids

30.89

Weight (kDa)

7.72

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	64 - 258	7.5e-30	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	543
AccI	GTMKAC	2 cut(s)	329, 660
AciI	CCGC	1 cut(s)	368
AclWI	GGATC	3 cut(s)	56, 378, 418
AcsI	RAATTY	2 cut(s)	207, 627
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	545, 723
AfiI	CCNNNNNNNGG	1 cut(s)	404
AflIII	ACRYGT	1 cut(s)	645
AgsI	TTSAA	5 cut(s)	44, 191, 296, 565, 781
AjuI	GAANNNNNNNTTGG	2 cut(s)	370, 402
AluBI	AGCT	4 cut(s)	141, 167, 484, 578
AluI	AGCT	4 cut(s)	141, 167, 484, 578
AlwI	GGATC	3 cut(s)	56, 378, 418
ApoI	RAATTY	2 cut(s)	207, 627
Asp718I	GGTACC	1 cut(s)	543
AsuHPI	GGTGA	1 cut(s)	691
BanI	GGYRCC	1 cut(s)	543
BccI	CCATC	1 cut(s)	534
BclI	TGATCA	1 cut(s)	673
BfmI	CTRYAG	1 cut(s)	213
BlpI	GCTNAGC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	545
BmsI	GCATC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	480
BsaBI	GATNNNNATC	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	714
Bse3DI	GCAATG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	230
BseJI	GATNNNNATC	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	2 cut(s)	177, 494
BseNI	ACTGG	1 cut(s)	714
BshNI	GGYRCC	1 cut(s)	543
BslI	CCNNNNNNNGG	1 cut(s)	404
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	1 cut(s)	368
BspCNI	CTCAG	2 cut(s)	176, 493
BspHI	TCATGA	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	545
BspPI	GGATC	3 cut(s)	56, 378, 418
BspT107I	GGYRCC	1 cut(s)	543
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	714
Bst4CI	ACNGT	3 cut(s)	217, 307, 804
BstDEI	CTNAG	3 cut(s)	163, 480, 536
BstENI	CCTNNNNNAGG	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	649
BstSFI	CTRYAG	1 cut(s)	213
BstX2I	RGATCY	2 cut(s)	61, 370
BstYI	RGATCY	2 cut(s)	61, 370
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	430
CciI	TCATGA	1 cut(s)	741
Csp6I	GTAC	2 cut(s)	544, 722
CviAII	CATG	7 cut(s)	149, 221, 241, 496, 646, 656, 742
CviJI	RGCY	6 cut(s)	141, 167, 291, 479, 484, 578
CviKI_1	RGCY	6 cut(s)	141, 167, 291, 479, 484, 578
CviQI	GTAC	2 cut(s)	544, 722
DdeI	CTNAG	3 cut(s)	163, 480, 536
Eco57I	CTGAAG	1 cut(s)	531
EcoNI	CCTNNNNNAGG	1 cut(s)	402
EcoRI	GAATTC	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	693
FaeI	CATG	7 cut(s)	152, 224, 244, 499, 649, 659, 745
FalI	AAGNNNNNCTT	2 cut(s)	567, 599
FatI	CATG	7 cut(s)	148, 220, 240, 495, 645, 655, 741
FbaI	TGATCA	1 cut(s)	673
FblI	GTMKAC	2 cut(s)	329, 660
GsuI	CTGGAG	1 cut(s)	492
Hin1II	CATG	7 cut(s)	152, 224, 244, 499, 649, 659, 745
HincII	GTYRAC	1 cut(s)	618
HindII	GTYRAC	1 cut(s)	618
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	1 cut(s)	96
HphI	GGTGA	1 cut(s)	691
Hpy166II	GTNNAC	3 cut(s)	330, 618, 661
Hpy188I	TCNGA	4 cut(s)	268, 280, 415, 511
Hpy188III	TCNNGA	4 cut(s)	441, 471, 742, 791
Hpy8I	GTNNAC	3 cut(s)	330, 618, 661
HpyAV	CCTTC	2 cut(s)	408, 766
HpyCH4III	ACNGT	3 cut(s)	217, 307, 804
HpyCH4V	TGCA	2 cut(s)	108, 691
HpyF3I	CTNAG	3 cut(s)	163, 480, 536
Hsp92II	CATG	7 cut(s)	152, 224, 244, 499, 649, 659, 745
KpnI	GGTACC	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	673
LpnPI	CCDG	8 cut(s)	187, 426, 456, 537, 543, 662, 695, 739
LweI	GCATC	1 cut(s)	678
MaeIII	GTNAC	3 cut(s)	314, 356, 514
MboII	GAAGA	4 cut(s)	62, 253, 623, 793
MflI	RGATCY	2 cut(s)	61, 370
MluCI	AATT	5 cut(s)	110, 144, 186, 207, 627
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	333, 401, 469
Mph1103I	ATGCAT	1 cut(s)	693
MseI	TTAA	2 cut(s)	503, 588
MslI	CAYNNNNRTG	2 cut(s)	494, 644
NlaIII	CATG	7 cut(s)	152, 224, 244, 499, 649, 659, 745
NlaIV	GGNNCC	1 cut(s)	545
NmuCI	GTSAC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	693
NspI	RCATGY	1 cut(s)	649
PagI	TCATGA	1 cut(s)	741
PciI	ACATGT	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	96
PscI	ACATGT	1 cut(s)	645
PspN4I	GGNNCC	1 cut(s)	545
PsrI	GAACNNNNNNTAC	2 cut(s)	449, 481
PsuI	RGATCY	2 cut(s)	61, 370
RsaI	GTAC	2 cut(s)	545, 723
RsaNI	GTAC	2 cut(s)	544, 722
RseI	CAYNNNNRTG	2 cut(s)	494, 644
SaqAI	TTAA	2 cut(s)	503, 588
SetI	ASST	7 cut(s)	143, 169, 335, 486, 549, 580, 681
SfaNI	GCATC	1 cut(s)	678
SfcI	CTRYAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	2 cut(s)	494, 644
SmlI	CTYRAG	1 cut(s)	791
SmoI	CTYRAG	1 cut(s)	791
Sse9I	AATT	5 cut(s)	110, 144, 186, 207, 627
SsiI	CCGC	1 cut(s)	368
TaaI	ACNGT	3 cut(s)	217, 307, 804
TasI	AATT	5 cut(s)	110, 144, 186, 207, 627
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	503, 588
Tru9I	TTAA	2 cut(s)	503, 588
TscAI	CASTG	1 cut(s)	437
TseFI	GTSAC	1 cut(s)	514
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	5 cut(s)	137, 229, 628, 720, 758
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	402
XapI	RAATTY	2 cut(s)	207, 627
XceI	RCATGY	1 cut(s)	649
XmiI	GTMKAC	2 cut(s)	329, 660
Zsp2I	ATGCAT	1 cut(s)	693

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.