Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Reverse (-)

30703301 .. 30705877

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38810.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCAATCAAATCCTATGAGATGTTGGCTGAGAAATACCTGCTCTCTGACCATATTGTTCCTTATACGTCTATGCTTTTTGGAATTTTGGCTTGCAAATTGGTTTATCATGTTAACCATCTGCTCAGTGCTGCTTACTTCAAGGGCTATTCTGGCCTTTCGAGAATGAAACGTATTGAGTGGAACAATAGGGCTATATCAACTCTTCATGCCATTTTTATCACAGCTATGTCATTGTACTTGGTGTTTTGGTCGAATCTCTATTCCGACTACTCTGACAACCAACACAAGCCTATTGTTACTTTCCAGAGTTCCCTATTGTCTACATTTGTATTGGGGGTTTCAGTTGGGTACTTTCTGTCTGACCTTGGGATGATCATTTGGTTCTACCCTGCTCTAGGTGGATTGGAATATGTGATTCATCATCTTCTTTCTATAACATCCGTAGCATATGCAATGTTGACCGGGGAAGGACAACTGTATACCTACATGGTTCTTATCTCTGAGACAACCACCCCTGGCATCAATTTGAGATGGTATCTTGACACTGCTGGAATGAAAAGGACTAAAACATATATGATAAATGGTGTTGTGATATTCATTGCTTGGCTGGTTGCCAGGATCCTCCTGTTCATGTTTCTGTTCTATCATCTCTACCTGCATTATGAACAGGTTAAACAAATGCACGCAGTTGGACAATTTTTAGCTTTCGGGGTGCCGCCAATGCTAGCTGTCATGAATTTGATGTGGTTTGGGAAGATTTTAAGGGGATTGAAGAAGACGTTAGCAAAGAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

267

Amino Acids

30.6

Weight (kDa)

9.45

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	2 - 180	1.2e-27	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	48, 666
AccB1I	GGYRCC	1 cut(s)	715
AccI	GTMKAC	2 cut(s)	323, 482
AciI	CCGC	1 cut(s)	719
AclWI	GGATC	2 cut(s)	616, 629
AcsI	RAATTY	2 cut(s)	84, 739
AfaI	GTAC	2 cut(s)	239, 353
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	2 cut(s)	142, 775
AjnI	CCWGG	2 cut(s)	517, 617
AluBI	AGCT	3 cut(s)	227, 707, 731
AluI	AGCT	3 cut(s)	227, 707, 731
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	2 cut(s)	616, 629
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	84, 739
AsuC2I	CCSGG	1 cut(s)	466
AsuNHI	GCTAGC	1 cut(s)	727
BamHI	GGATCC	1 cut(s)	621
BanI	GGYRCC	1 cut(s)	715
BbsI	GAAGAC	1 cut(s)	785
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	126, 528
BciT130I	CCWGG	2 cut(s)	519, 619
BclI	TGATCA	1 cut(s)	375
BcnI	CCSGG	1 cut(s)	466
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	2 cut(s)	398, 728
BfuAI	ACCTGC	2 cut(s)	48, 666
BisI	GCNGC	2 cut(s)	132, 719
BlsI	GCNGC	2 cut(s)	133, 720
Bme1390I	CCNGG	3 cut(s)	466, 519, 619
BmiI	GGNNCC	2 cut(s)	623, 717
BmrFI	CCNGG	3 cut(s)	466, 519, 619
BmsI	GCATC	1 cut(s)	531
BmtI	GCTAGC	1 cut(s)	731
BpiI	GAAGAC	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	466
BsaJI	CCNNGG	3 cut(s)	367, 465, 517
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse3DI	GCAATG	2 cut(s)	462, 600
BseBI	CCWGG	2 cut(s)	519, 619
BseDI	CCNNGG	3 cut(s)	367, 465, 517
BseGI	GGATG	2 cut(s)	378, 440
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMI	GCAATG	2 cut(s)	462, 600
BseMII	CTCAG	3 cut(s)	21, 139, 495
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	156
BshNI	GGYRCC	1 cut(s)	715
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	375, 621
BspACI	CCGC	1 cut(s)	719
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	3 cut(s)	22, 138, 496
BspHI	TCATGA	1 cut(s)	735
BspLI	GGNNCC	2 cut(s)	623, 717
BspMI	ACCTGC	2 cut(s)	48, 666
BspOI	GCTAGC	1 cut(s)	731
BspPI	GGATC	2 cut(s)	616, 629
BspT107I	GGYRCC	1 cut(s)	715
BsrDI	GCAATG	2 cut(s)	462, 600
BssECI	CCNNGG	3 cut(s)	367, 465, 517
BssMI	GATC	2 cut(s)	375, 621
BssNAI	GTATAC	1 cut(s)	483
BssT1I	CCWWGG	1 cut(s)	367
Bst1107I	GTATAC	1 cut(s)	483
Bst2UI	CCWGG	2 cut(s)	519, 619
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	3 cut(s)	94, 687, 729
BstDEI	CTNAG	3 cut(s)	30, 125, 504
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstF5I	GGATG	2 cut(s)	378, 440
BstKTI	GATC	2 cut(s)	378, 624
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	375, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 724
BstNI	CCWGG	2 cut(s)	519, 619
BstSCI	CCNGG	3 cut(s)	464, 517, 617
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	1 cut(s)	621
BstYI	RGATCY	1 cut(s)	621
BstZ17I	GTATAC	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	2 cut(s)	378, 440
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	2 cut(s)	133, 546
BveI	ACCTGC	2 cut(s)	48, 666
Cac8I	GCNNGC	3 cut(s)	94, 687, 729
CciI	TCATGA	1 cut(s)	735
Csp6I	GTAC	2 cut(s)	238, 352
CviAII	CATG	5 cut(s)	110, 209, 490, 634, 736
CviQI	GTAC	2 cut(s)	238, 352
DdeI	CTNAG	3 cut(s)	30, 125, 504
DpnI	GATC	2 cut(s)	377, 623
DpnII	GATC	2 cut(s)	375, 621
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	367
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoRII	CCWGG	2 cut(s)	517, 617
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	5 cut(s)	113, 212, 493, 637, 739
FatI	CATG	5 cut(s)	109, 208, 489, 633, 735
FauNDI	CATATG	1 cut(s)	451
FbaI	TGATCA	1 cut(s)	375
FblI	GTMKAC	2 cut(s)	323, 482
Fnu4HI	GCNGC	2 cut(s)	132, 719
FokI	GGATG	2 cut(s)	385, 427
Fsp4HI	GCNGC	2 cut(s)	132, 719
FspBI	CTAG	2 cut(s)	398, 728
GluI	GCNGC	2 cut(s)	132, 719
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	5 cut(s)	113, 212, 493, 637, 739
HincII	GTYRAC	2 cut(s)	115, 462
HindII	GTYRAC	2 cut(s)	115, 462
HinfI	GANTC	2 cut(s)	256, 418
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	465
Hpy166II	GTNNAC	4 cut(s)	115, 324, 462, 483
Hpy188I	TCNGA	5 cut(s)	49, 268, 277, 364, 505
Hpy188III	TCNNGA	4 cut(s)	162, 307, 542, 736
Hpy8I	GTNNAC	4 cut(s)	115, 324, 462, 483
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4IV	ACGT	3 cut(s)	68, 172, 782
HpyCH4V	TGCA	4 cut(s)	96, 455, 661, 685
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 724
HpyF3I	CTNAG	3 cut(s)	30, 125, 504
HpySE526I	ACGT	3 cut(s)	68, 172, 782
Hsp92II	CATG	5 cut(s)	113, 212, 493, 637, 739
Ksp22I	TGATCA	1 cut(s)	375
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	2 cut(s)	375, 621
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	531
MaeI	CTAG	2 cut(s)	398, 728
MaeII	ACGT	3 cut(s)	68, 172, 782
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	2 cut(s)	377, 623
MboI	GATC	2 cut(s)	375, 621
MboII	GAAGA	5 cut(s)	197, 419, 769, 787, 790
MflI	RGATCY	1 cut(s)	621
MluCI	AATT	5 cut(s)	84, 98, 526, 698, 739
MmeI	TCCRAC	2 cut(s)	291, 673
MnlI	CCTC	2 cut(s)	635, 786
MseI	TTAA	3 cut(s)	114, 675, 764
MslI	CAYNNNNRTG	1 cut(s)	227
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	3 cut(s)	466, 519, 619
MvaI	CCWGG	2 cut(s)	519, 619
MwoI	GCNNNNNNNGC	2 cut(s)	153, 724
NciI	CCSGG	1 cut(s)	466
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	2 cut(s)	375, 621
NheI	GCTAGC	1 cut(s)	727
NlaIII	CATG	5 cut(s)	113, 212, 493, 637, 739
NlaIV	GGNNCC	2 cut(s)	623, 717
PagI	TCATGA	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	256, 418
PkrI	GCNGC	2 cut(s)	133, 720
Psp6I	CCWGG	2 cut(s)	517, 617
PspGI	CCWGG	2 cut(s)	517, 617
PspN4I	GGNNCC	2 cut(s)	623, 717
PsuI	RGATCY	1 cut(s)	621
RsaI	GTAC	2 cut(s)	239, 353
RsaNI	GTAC	2 cut(s)	238, 352
RseI	CAYNNNNRTG	1 cut(s)	227
SaqAI	TTAA	3 cut(s)	114, 675, 764
SatI	GCNGC	2 cut(s)	132, 719
Sau3AI	GATC	2 cut(s)	375, 621
ScrFI	CCNGG	3 cut(s)	466, 519, 619
SfaNI	GCATC	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	84, 98, 526, 698, 739
SsiI	CCGC	1 cut(s)	719
SspMI	CTAG	2 cut(s)	398, 728
StyD4I	CCNGG	3 cut(s)	464, 517, 617
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	480
TaiI	ACGT	3 cut(s)	71, 175, 785
TaqI	TCGA	2 cut(s)	161, 254
TasI	AATT	5 cut(s)	84, 98, 526, 698, 739
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	2 cut(s)	256, 418
Tru1I	TTAA	3 cut(s)	114, 675, 764
Tru9I	TTAA	3 cut(s)	114, 675, 764
TscAI	CASTG	2 cut(s)	133, 553
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	8 cut(s)	182, 197, 410, 572, 589, 622, 681, 752
TspGWI	ACGGA	1 cut(s)	433
TspRI	CASTG	2 cut(s)	133, 553
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	2 cut(s)	84, 739
XmiI	GTMKAC	2 cut(s)	323, 482
XspI	CTAG	2 cut(s)	398, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.