Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Forward (+)

38756758 .. 38761116

Gene Structure 4359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1256500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAATGTCTACAAAGACAGTTATGACGATCAAATCTTACCAAAATCAGGCCGGAGTTCTTGTTAAAAATTACTTACTAGCGGATCCCTTCATACCATATACTTCTGTTATTGGAGGCATAATTTTGTGCAAAATGGTATATGATCTTACCCATTTAATTAGTACCTTTTACATTAAGGCTTATGGCAGTCTTACAAAAATCCAACGAATTGAGTGGAACAGTCGTGGTATCTCCAGTATTCATGCCATTTTTATAACGGCTCTGTCCTTGTACTTTGTGTTCTGGTCCGATCTCTTTTCTGATCAACAGCACCTTGGCCTTATTACATTTCGAAGCTCACCGTTGTCTGTTTTTGGATTAGGGGTCTCTGTTGGGTACTTCTGTTCGGATCTGGGAATGCTATTATGGCTATATCCCTGTTTAGGGGGAATGGAGTATGTTTTCCATCACTCACTTGCTGGAATTGCAGTAGCATACTCCATGTTTTCTGGGGAAGGGCAACTTTATACATACATGATCCTCATCTCTGAGATCACTACTCCAGAGATCAATATGAGATGGTATCTTGATACAGCTGGTCTTAAGAGGTCCAGCGCATATCTCCTAAACGGCATTGTGATATTTTTATCATGGCTGGCGGCAAGAATTCTGCTGTTTGGCTACATGTTTTACCATGTTTACTTGCACTATGATATGATCATCCAGATGCACACCTACGGATATCTGTTGGTGTTTGTTGTGCCATCCGTTCTAGCTGTTATGAACTTGATGTGGTTTGGAAAGATTATCAAGGGATTGATGAAGCAATTGGCCAAGATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N TRAM_LAG1_CLN8

Protein Analysis

276

Amino Acids

31.38

Weight (kDa)

8.79

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	72 - 265	2e-28	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	2 cut(s)	83, 641
AclWI	GGATC	4 cut(s)	80, 93, 399, 514
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	1 cut(s)	648
AfaI	GTAC	3 cut(s)	166, 275, 380
AfiI	CCNNNNNNNGG	3 cut(s)	49, 425, 426
AflII	CTTAAG	1 cut(s)	584
AflIII	ACRYGT	1 cut(s)	666
AluBI	AGCT	3 cut(s)	339, 578, 758
AluI	AGCT	3 cut(s)	339, 578, 758
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	4 cut(s)	80, 93, 399, 514
AoxI	GGCC	3 cut(s)	51, 319, 813
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	288, 591
AsuHPI	GGTGA	1 cut(s)	333
AsuII	TTCGAA	1 cut(s)	334
AvaII	GGWCC	2 cut(s)	288, 591
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BalI	TGGCCA	1 cut(s)	815
BamHI	GGATCC	1 cut(s)	85
BccI	CCATC	3 cut(s)	456, 555, 754
BceAI	ACGGC	2 cut(s)	276, 628
BclI	TGATCA	2 cut(s)	304, 699
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	2 cut(s)	80, 755
BfrI	CTTAAG	1 cut(s)	584
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme18I	GGWCC	2 cut(s)	288, 591
BmgT120I	GGNCC	2 cut(s)	288, 591
BmiI	GGNNCC	1 cut(s)	87
BmsI	GCATC	2 cut(s)	699, 810
BpmI	CTGGAG	2 cut(s)	220, 528
Bpu14I	TTCGAA	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 425, 426
Bse1I	ACTGG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	2 cut(s)	702, 746
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	3 cut(s)	49, 425, 426
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	53, 321, 815
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	3 cut(s)	49, 425, 426
BsmAI	GTCTC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	53, 321, 815
Bso31I	GGTCTC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	334
BspACI	CCGC	2 cut(s)	83, 641
BspANI	GGCC	3 cut(s)	53, 321, 815
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	4 cut(s)	80, 93, 399, 514
BspT104I	TTCGAA	1 cut(s)	334
BspTI	CTTAAG	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	373
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	3 cut(s)	22, 224, 345
BstAFI	CTTAAG	1 cut(s)	584
BstBI	TTCGAA	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	639
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	702, 746
BstHHI	GCGC	1 cut(s)	599
BstMAI	GTCTC	1 cut(s)	373
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 467
BstNSI	RCATGY	1 cut(s)	670
BstX2I	RGATCY	2 cut(s)	85, 391
BstYI	RGATCY	2 cut(s)	85, 391
BsuRI	GGCC	3 cut(s)	53, 321, 815
BtsCI	GGATG	2 cut(s)	702, 746
Cac8I	GCNNGC	1 cut(s)	639
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	288, 591
Csp6I	GTAC	3 cut(s)	165, 274, 379
CviAII	CATG	6 cut(s)	245, 484, 517, 633, 667, 677
CviQI	GTAC	3 cut(s)	165, 274, 379
DdeI	CTNAG	1 cut(s)	531
EaeI	YGGCCR	1 cut(s)	813
Eco130I	CCWWGG	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	288, 591
EcoRI	GAATTC	1 cut(s)	648
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	6 cut(s)	248, 487, 520, 636, 670, 680
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	6 cut(s)	244, 483, 516, 632, 666, 676
FbaI	TGATCA	2 cut(s)	304, 699
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	2 cut(s)	689, 733
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	2 cut(s)	80, 755
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	2 cut(s)	220, 528
HaeIII	GGCC	3 cut(s)	53, 321, 815
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	6 cut(s)	248, 487, 520, 636, 670, 680
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	2 cut(s)	12, 682
Hpy188I	TCNGA	4 cut(s)	292, 304, 391, 532
Hpy188III	TCNNGA	3 cut(s)	545, 569, 706
Hpy8I	GTNNAC	2 cut(s)	12, 682
HpyAV	CCTTC	2 cut(s)	100, 491
HpyCH4III	ACNGT	3 cut(s)	22, 224, 345
HpyCH4V	TGCA	5 cut(s)	132, 470, 688, 712, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 467
HpyF3I	CTNAG	1 cut(s)	531
Hsp92II	CATG	6 cut(s)	248, 487, 520, 636, 670, 680
HspAI	GCGC	1 cut(s)	597
Ksp22I	TGATCA	2 cut(s)	304, 699
LweI	GCATC	2 cut(s)	699, 810
MaeI	CTAG	2 cut(s)	80, 755
MfeI	CAATTG	1 cut(s)	809
MflI	RGATCY	2 cut(s)	85, 391
MlsI	TGGCCA	1 cut(s)	815
MluCI	AATT	7 cut(s)	70, 123, 159, 210, 465, 648, 809
MluNI	TGGCCA	1 cut(s)	815
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	110, 533, 582
Mox20I	TGGCCA	1 cut(s)	815
MscI	TGGCCA	1 cut(s)	815
MseI	TTAA	4 cut(s)	66, 158, 177, 585
MslI	CAYNNNNRTG	1 cut(s)	707
Msp20I	TGGCCA	1 cut(s)	815
MspA1I	CMGCKG	1 cut(s)	578
MspCI	CTTAAG	1 cut(s)	584
MspI	CCGG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	809
Mva1269I	GAATGC	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	409, 467
NlaIII	CATG	6 cut(s)	248, 487, 520, 636, 670, 680
NlaIV	GGNNCC	1 cut(s)	87
NspI	RCATGY	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	334
PciI	ACATGT	1 cut(s)	666
PctI	GAATGC	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	643
PscI	ACATGT	1 cut(s)	666
PsiI	TTATAA	1 cut(s)	257
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	288, 591
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PsuI	RGATCY	2 cut(s)	85, 391
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	3 cut(s)	166, 275, 380
RsaNI	GTAC	3 cut(s)	165, 274, 379
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	4 cut(s)	66, 158, 177, 585
SatI	GCNGC	1 cut(s)	642
Sau96I	GGNCC	2 cut(s)	288, 591
SetI	ASST	7 cut(s)	170, 318, 341, 580, 593, 719, 760
SfaNI	GCATC	2 cut(s)	699, 810
SfuI	TTCGAA	1 cut(s)	334
SinI	GGWCC	2 cut(s)	288, 591
SmiMI	CAYNNNNRTG	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	7 cut(s)	70, 123, 159, 210, 465, 648, 809
SsiI	CCGC	2 cut(s)	83, 641
SspMI	CTAG	2 cut(s)	80, 755
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	3 cut(s)	22, 224, 345
TaqI	TCGA	1 cut(s)	334
TasI	AATT	7 cut(s)	70, 123, 159, 210, 465, 648, 809
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	644
Tru1I	TTAA	4 cut(s)	66, 158, 177, 585
Tru9I	TTAA	4 cut(s)	66, 158, 177, 585
TspDTI	ATGAA	4 cut(s)	82, 233, 779, 818
TspGWI	ACGGA	2 cut(s)	735, 739
Vha464I	CTTAAG	1 cut(s)	584
VpaK11BI	GGWCC	2 cut(s)	288, 591
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	1 cut(s)	670
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	2 cut(s)	80, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.