Rroxscaffold_2G00095750

Transmembrane protein 56-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001172
Physical Location & Seq
Forward (+)
17112567 .. 17114660
2094 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00095750.1

Sequence Viewer

Length: 999 bp
ATGGCAATCAAATCCTATGAGATGTTGGCCGAGCAATACCTGCTCTCCGACCCTTTTGTTCCTTACACATCCATGCTTTTGGGAATTTGCGCCTGCAAATTGGTTTACCATGTTAACCATTTGCTCAGTGCTGCTTACTTCAAGGGATATTGTGGCCTTTCGAGGATGAAACGTATTGAGTGGAACAATAGGGCTATGTCAACTCTTCATGCCATTTTTATCACAGCTATGTCATTGTACTTGGTGTTTTGGTCGAATCTCTATTCCGACTATTCTGACAACCAACTCAAGCCATTTGTTACTTTGCAGAGCTCCCCATTGTCTACATTTGTATTGGGGGTTTCAGTTGGGTACTTCCTATCTGACCTTGGCATGATCTTTTGGTTTTACCCTGCTCTAGGTGGATTGGAATATGTGATTCATCATCTTCTTTCTATAGCATCTGTAGCATATGCAATGTTGACTGGGGAAGGACAACTGTATACCTACATGGTTCTTATCTCTGAGACAACCACCCCCGGTATCAATTTGAGATGGTATCTTGACACTGCTGGAATGAAGAGGACTAAAACTTATATGATAAACGGGGTTGTAATATTCATTGCTTGGCTGGTTGCCAGAATCCTTCTGTTCATGTTTCTGTTCTACCATCTCTACCTGCATTATGAACAGGTGATTTCTACGCCTGCAAAAGCCCGTGATATGCTAAGACTTACGTTACCATCCTACATGCTCTTGTCAACAGGTAAAACAAATGCACGCCGTTGGACAATTTTTAGCTTTCGGGGTGCCACCGATACTAGCTGTCATGAATTTGATATGGTTTGGGAAGATTTTGAAGGGATTGAAGAAGACATTAGCAAAGAGGCAATGAGATTTGATGGGGGTGATATCAACTTAAGAAGTGTGACCGGAGATAAATCTAATTGTATATCCAGTTGCATACAATCTTTATTCATCTATCCCCTTCTGAACCTCGCTCGTCTCCATGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAM_LAG1_CLN8

Protein Analysis

332

Amino Acids

38.07

Weight (kDa)

6.5

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAM_LAG1_CLN8 PF03798 60 - 228 2.5e-28 TLC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 48, 666
AccB1I GGYRCC 1 cut(s) 788
AccI GTMKAC 2 cut(s) 323, 482
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 2 cut(s) 84, 812
AfaI GTAC 2 cut(s) 239, 353
AfiI CCNNNNNNNGG 1 cut(s) 398
AflII CTTAAG 1 cut(s) 898
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 3 cut(s) 142, 839, 848
AluBI AGCT 4 cut(s) 227, 312, 780, 804
AluI AGCT 4 cut(s) 227, 312, 780, 804
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 2 cut(s) 500, 989
AoxI GGCC 2 cut(s) 27, 154
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 2 cut(s) 84, 812
AspLEI GCGC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 2 cut(s) 685, 899
BanI GGYRCC 1 cut(s) 788
BanII GRGCYC 1 cut(s) 314
BbsI GAAGAC 1 cut(s) 858
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 118
BccI CCATC 4 cut(s) 528, 657, 730, 875
BceAI ACGGC 1 cut(s) 747
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 2 cut(s) 500, 989
BfaI CTAG 2 cut(s) 398, 801
BfmI CTRYAG 2 cut(s) 435, 444
BfrI CTTAAG 1 cut(s) 898
BfuAI ACCTGC 2 cut(s) 48, 666
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 519
BmiI GGNNCC 1 cut(s) 790
BmrFI CCNGG 1 cut(s) 519
BmrI ACTGGG 1 cut(s) 474
BmsI GCATC 1 cut(s) 449
BmuI ACTGGG 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 367, 517
BsaWI WCCGGW 1 cut(s) 911
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 2 cut(s) 469, 936
Bse3DI GCAATG 3 cut(s) 462, 600, 876
BseDI CCNNGG 2 cut(s) 367, 517
BseGI GGATG 3 cut(s) 68, 171, 722
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 3 cut(s) 462, 600, 876
BseMII CTCAG 2 cut(s) 139, 495
BseNI ACTGG 2 cut(s) 469, 936
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 2 cut(s) 29, 156
BshNI GGYRCC 1 cut(s) 788
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 2 cut(s) 519, 912
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 2 cut(s) 500, 989
BsmBI CGTCTC 1 cut(s) 989
BsnI GGCC 2 cut(s) 29, 156
Bsp1286I GDGCHC 1 cut(s) 314
Bsp143I GATC 1 cut(s) 375
BspANI GGCC 2 cut(s) 29, 156
BspCNI CTCAG 2 cut(s) 138, 496
BspHI TCATGA 1 cut(s) 808
BspLI GGNNCC 1 cut(s) 790
BspMI ACCTGC 2 cut(s) 48, 666
BspT107I GGYRCC 1 cut(s) 788
BspTI CTTAAG 1 cut(s) 898
BsrDI GCAATG 3 cut(s) 462, 600, 876
BsrI ACTGG 2 cut(s) 469, 936
BssECI CCNNGG 2 cut(s) 367, 517
BssMI GATC 1 cut(s) 375
BssNAI GTATAC 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 367
Bst1107I GTATAC 1 cut(s) 483
Bst4CI ACNGT 1 cut(s) 480
Bst6I CTCTTC 2 cut(s) 210, 554
BstAFI CTTAAG 1 cut(s) 898
BstAPI GCANNNNNTGC 1 cut(s) 40
BstC8I GCNNGC 3 cut(s) 94, 687, 760
BstDEI CTNAG 3 cut(s) 125, 504, 707
BstENI CCTNNNNNAGG 1 cut(s) 396
BstF5I GGATG 3 cut(s) 68, 171, 722
BstHHI GCGC 1 cut(s) 92
BstKTI GATC 1 cut(s) 378
BstMAI GTCTC 2 cut(s) 500, 989
BstMBI GATC 1 cut(s) 375
BstMWI GCNNNNNNNGC 2 cut(s) 40, 446
BstNSI RCATGY 2 cut(s) 733, 997
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 2 cut(s) 435, 444
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 858
BstXI CCANNNNNNTGG 1 cut(s) 79
BstZ17I GTATAC 1 cut(s) 483
BsuRI GGCC 2 cut(s) 29, 156
BtsCI GGATG 3 cut(s) 68, 171, 722
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 133, 546
BveI ACCTGC 2 cut(s) 48, 666
Cac8I GCNNGC 3 cut(s) 94, 687, 760
CciI TCATGA 1 cut(s) 808
CfoI GCGC 1 cut(s) 92
Csp6I GTAC 2 cut(s) 238, 352
CviQI GTAC 2 cut(s) 238, 352
DdeI CTNAG 3 cut(s) 125, 504, 707
DpnI GATC 1 cut(s) 377
DpnII GATC 1 cut(s) 375
EaeI YGGCCR 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 210, 554
EarI CTCTTC 2 cut(s) 210, 554
Ecl136II GAGCTC 1 cut(s) 312
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 314
Eco32I GATATC 1 cut(s) 892
Eco53kI GAGCTC 1 cut(s) 312
EcoICRI GAGCTC 1 cut(s) 312
EcoNI CCTNNNNNAGG 1 cut(s) 396
EcoRV GATATC 1 cut(s) 892
EcoT14I CCWWGG 1 cut(s) 367
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 1 cut(s) 367
Esp3I CGTCTC 1 cut(s) 989
FauNDI CATATG 1 cut(s) 451
FblI GTMKAC 2 cut(s) 323, 482
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 3 cut(s) 55, 178, 709
FriOI GRGCYC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 2 cut(s) 398, 801
GlaI GCGC 1 cut(s) 91
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 29, 156
HapII CCGG 2 cut(s) 519, 912
HhaI GCGC 1 cut(s) 92
Hin6I GCGC 1 cut(s) 90
HinP1I GCGC 1 cut(s) 90
HincII GTYRAC 4 cut(s) 115, 201, 462, 741
HindII GTYRAC 4 cut(s) 115, 201, 462, 741
HinfI GANTC 3 cut(s) 256, 418, 621
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 2 cut(s) 519, 912
HphI GGTGA 2 cut(s) 685, 899
Hpy166II GTNNAC 7 cut(s) 106, 115, 201, 324, 462, 483, 741
Hpy188I TCNGA 6 cut(s) 49, 268, 277, 364, 505, 972
Hpy188III TCNNGA 2 cut(s) 542, 809
Hpy8I GTNNAC 7 cut(s) 106, 115, 201, 324, 462, 483, 741
HpyAV CCTTC 4 cut(s) 464, 635, 833, 977
HpyCH4III ACNGT 1 cut(s) 480
HpyCH4IV ACGT 2 cut(s) 172, 716
HpyCH4V TGCA 7 cut(s) 96, 307, 455, 661, 689, 758, 942
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 446
HpyF3I CTNAG 3 cut(s) 125, 504, 707
HpySE526I ACGT 2 cut(s) 172, 716
HspAI GCGC 1 cut(s) 90
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 375
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 449
MaeI CTAG 2 cut(s) 398, 801
MaeII ACGT 2 cut(s) 172, 716
MaeIII GTNAC 3 cut(s) 298, 717, 907
MalI GATC 1 cut(s) 377
MboI GATC 1 cut(s) 375
MboII GAAGA 6 cut(s) 197, 419, 571, 842, 860, 863
MhlI GDGCHC 1 cut(s) 314
MluCI AATT 6 cut(s) 84, 98, 526, 771, 812, 925
MmeI TCCRAC 3 cut(s) 72, 291, 746
MnlI CCTC 4 cut(s) 156, 555, 859, 986
MseI TTAA 2 cut(s) 114, 899
MslI CAYNNNNRTG 2 cut(s) 71, 227
MspCI CTTAAG 1 cut(s) 898
MspI CCGG 2 cut(s) 519, 912
MspR9I CCNGG 1 cut(s) 519
MwoI GCNNNNNNNGC 2 cut(s) 40, 446
NciI CCSGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 451
NdeII GATC 1 cut(s) 375
NlaIV GGNNCC 1 cut(s) 790
NmeAIII GCCGAG 1 cut(s) 55
NmuCI GTSAC 1 cut(s) 907
NspI RCATGY 2 cut(s) 733, 997
PagI TCATGA 1 cut(s) 808
PciI ACATGT 1 cut(s) 993
PfeI GAWTC 3 cut(s) 256, 418, 621
PkrI GCNGC 1 cut(s) 133
PscI ACATGT 1 cut(s) 993
Psp124BI GAGCTC 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 790
RsaI GTAC 2 cut(s) 239, 353
RsaNI GTAC 2 cut(s) 238, 352
RseI CAYNNNNRTG 2 cut(s) 71, 227
SacI GAGCTC 1 cut(s) 314
SaqAI TTAA 2 cut(s) 114, 899
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 375
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 2 cut(s) 435, 444
SmiMI CAYNNNNRTG 2 cut(s) 71, 227
SmlI CTYRAG 2 cut(s) 287, 898
SmoI CTYRAG 2 cut(s) 287, 898
Sse9I AATT 6 cut(s) 84, 98, 526, 771, 812, 925
SspI AATATT 1 cut(s) 597
SspMI CTAG 2 cut(s) 398, 801
SstI GAGCTC 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 480
TaiI ACGT 2 cut(s) 175, 719
TaqI TCGA 2 cut(s) 161, 254
TasI AATT 6 cut(s) 84, 98, 526, 771, 812, 925
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 3 cut(s) 256, 418, 621
Tru1I TTAA 2 cut(s) 114, 899
Tru9I TTAA 2 cut(s) 114, 899
TscAI CASTG 2 cut(s) 133, 553
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 9 cut(s) 182, 197, 410, 572, 589, 622, 681, 825, 946
TspRI CASTG 2 cut(s) 133, 553
Vha464I CTTAAG 1 cut(s) 898
XagI CCTNNNNNAGG 1 cut(s) 396
XapI RAATTY 2 cut(s) 84, 812
XceI RCATGY 2 cut(s) 733, 997
XmiI GTMKAC 2 cut(s) 323, 482
XspI CTAG 2 cut(s) 398, 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.