Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Reverse (-)

7046702 .. 7051377

Gene Structure 4676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11930.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCAGTGCCCAGAAAGACAGCAATGGCAATTAAATCTTACCAAAATCAGGCTGAAGATCTGGTTAAAAGCTACTTACTAGCGGATCCGTTTATGCCATATACTTCCGTTATTGGAGGAATATTTTTGTGCAAACTGGTCTATGATCTTACCCAGTTAATTAGTACCTTTTACATCAAAAGTTATGCTAGTCTTACAAAAATCCAACGAATCGAGTGGAACAGTCGAGGAATCTCCAGCATCCATGCTATTTTTATCACAGTTCTTTCCTTGTACTTTGTTTTCTGGTCCGATCTCTTTTCAGACCAACAGCTAGCTGGCCTTGTTACATTTCGAAGCTCATCGTTGTCTGTATTTGGATTAGGGGTCTCTGTTGGGTACTTCTGTGCGGACCTAGGAATGTTACTGTGGCTATATCCTTCTTTAGGTGGAATGGAGTATGTCCTCCATCACTCACTTGCTGGAATTGCGGTAGCGTACTCCATGTTTTCTGGGGAAGGGCAACTTTATACATACATGATCCTCATCTCTGAGATCACTACTCCAGAGATCAATATGAGATGGTATCTTGATACAGCTGGTATGAAGAGGTCCAGCGCATATCTCATTAACGGCATTGTGATATTTTTTTCATGGCTGGGAGCCAGGATTCTACTGTTCGGTTACATGTTTTACCATGTTTACCTGCACTATGATCAGGTCATCCAGATGCACATCTTTGGATATATGTTGGTCTTTGCTGTACCAGCAGTGCTAGCAATAATGAACTTGATGTGGTTTGGAAAGATTATCAAGGGGTTGATTAAACAATTATCTAAGAGGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

276

Amino Acids

31.31

Weight (kDa)

9.03

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	72 - 215	1.2e-18	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	693
AciI	CCGC	3 cut(s)	83, 389, 470
AclWI	GGATC	3 cut(s)	80, 93, 514
AcuI	CTGAAG	1 cut(s)	75
AfaI	GTAC	5 cut(s)	166, 275, 380, 479, 744
AfiI	CCNNNNNNNGG	2 cut(s)	49, 425
AflIII	ACRYGT	1 cut(s)	666
AjnI	CCWGG	1 cut(s)	644
AluBI	AGCT	5 cut(s)	72, 313, 317, 339, 578
AluI	AGCT	5 cut(s)	72, 313, 317, 339, 578
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	3 cut(s)	80, 93, 514
AoxI	GGCC	1 cut(s)	319
AspA2I	CCTAGG	1 cut(s)	394
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	3 cut(s)	288, 391, 591
AsuII	TTCGAA	1 cut(s)	334
AsuNHI	GCTAGC	2 cut(s)	313, 754
AvaII	GGWCC	3 cut(s)	288, 391, 591
AvrII	CCTAGG	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	12
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BamHI	GGATCC	1 cut(s)	85
BccI	CCATC	2 cut(s)	456, 555
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	1 cut(s)	646
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	5 cut(s)	80, 189, 314, 395, 755
BfuAI	ACCTGC	1 cut(s)	693
BglII	AGATCT	1 cut(s)	58
BlnI	CCTAGG	1 cut(s)	394
Bme1390I	CCNGG	1 cut(s)	646
Bme18I	GGWCC	3 cut(s)	288, 391, 591
BmgT120I	GGNCC	3 cut(s)	288, 391, 591
BmiI	GGNNCC	2 cut(s)	87, 643
BmrFI	CCNGG	1 cut(s)	646
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	249, 699
BmtI	GCTAGC	2 cut(s)	317, 758
BmuI	ACTGGG	1 cut(s)	148
BpmI	CTGGAG	2 cut(s)	220, 528
Bpu14I	TTCGAA	1 cut(s)	334
BsaBI	GATNNNNATC	2 cut(s)	524, 713
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 425
Bse1I	ACTGG	2 cut(s)	141, 154
Bse3DI	GCAATG	1 cut(s)	30
Bse8I	GATNNNNATC	2 cut(s)	524, 713
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	2 cut(s)	240, 702
BseJI	GATNNNNATC	2 cut(s)	524, 713
BseLI	CCNNNNNNNGG	2 cut(s)	49, 425
BseMI	GCAATG	1 cut(s)	30
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	2 cut(s)	141, 154
BseSI	GKGCMC	1 cut(s)	12
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	1 cut(s)	671
BshFI	GGCC	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	49, 425
BsmAI	GTCTC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	334
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	8 cut(s)	58, 85, 145, 292, 519, 534, 549, 694
BspACI	CCGC	3 cut(s)	83, 389, 470
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	87, 643
BspMI	ACCTGC	1 cut(s)	693
BspOI	GCTAGC	2 cut(s)	317, 758
BspPI	GGATC	3 cut(s)	80, 93, 514
BspT104I	TTCGAA	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	373
BsrDI	GCAATG	1 cut(s)	30
BsrI	ACTGG	2 cut(s)	141, 154
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	8 cut(s)	58, 85, 145, 292, 519, 534, 549, 694
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	4 cut(s)	224, 262, 408, 657
Bst6I	CTCTTC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	334
BstC8I	GCNNGC	3 cut(s)	315, 319, 756
BstDEI	CTNAG	2 cut(s)	531, 816
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	2 cut(s)	240, 702
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	8 cut(s)	61, 88, 148, 295, 522, 537, 552, 697
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	8 cut(s)	58, 85, 145, 292, 519, 534, 549, 694
BstMWI	GCNNNNNNNGC	3 cut(s)	467, 746, 755
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	1 cut(s)	644
BstSLI	GKGCMC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	58, 85
BstYI	RGATCY	2 cut(s)	58, 85
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	240, 702
BtsI	GCAGTG	2 cut(s)	12, 756
BtsIMutI	CAGTG	2 cut(s)	12, 756
BveI	ACCTGC	1 cut(s)	693
Cac8I	GCNNGC	3 cut(s)	315, 319, 756
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	3 cut(s)	288, 391, 591
Csp6I	GTAC	5 cut(s)	165, 274, 379, 478, 743
CviAII	CATG	6 cut(s)	245, 484, 517, 633, 667, 677
CviQI	GTAC	5 cut(s)	165, 274, 379, 478, 743
DdeI	CTNAG	2 cut(s)	531, 816
DpnI	GATC	8 cut(s)	60, 87, 147, 294, 521, 536, 551, 696
DpnII	GATC	8 cut(s)	58, 85, 145, 292, 519, 534, 549, 694
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	373
Eco47I	GGWCC	3 cut(s)	288, 391, 591
Eco57I	CTGAAG	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoRII	CCWGG	1 cut(s)	644
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	6 cut(s)	248, 487, 520, 636, 670, 680
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	6 cut(s)	244, 483, 516, 632, 666, 676
FbaI	TGATCA	1 cut(s)	694
FokI	GGATG	2 cut(s)	227, 689
FspBI	CTAG	5 cut(s)	80, 189, 314, 395, 755
GlaI	GCGC	1 cut(s)	598
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	2 cut(s)	220, 528
HaeIII	GGCC	1 cut(s)	321
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	6 cut(s)	248, 487, 520, 636, 670, 680
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HinfI	GANTC	3 cut(s)	210, 231, 649
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	3 cut(s)	292, 304, 532
Hpy188III	TCNNGA	3 cut(s)	545, 569, 706
Hpy8I	GTNNAC	1 cut(s)	682
HpyAV	CCTTC	2 cut(s)	429, 491
HpyCH4III	ACNGT	4 cut(s)	224, 262, 408, 657
HpyCH4V	TGCA	3 cut(s)	132, 688, 712
HpyF10VI	GCNNNNNNNGC	3 cut(s)	467, 746, 755
HpyF3I	CTNAG	2 cut(s)	531, 816
Hsp92II	CATG	6 cut(s)	248, 487, 520, 636, 670, 680
HspAI	GCGC	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	8 cut(s)	58, 85, 145, 292, 519, 534, 549, 694
LmnI	GCTCC	1 cut(s)	641
LweI	GCATC	2 cut(s)	249, 699
MaeI	CTAG	5 cut(s)	80, 189, 314, 395, 755
MaeIII	GTNAC	3 cut(s)	325, 402, 662
MalI	GATC	8 cut(s)	60, 87, 147, 294, 521, 536, 551, 696
MboI	GATC	8 cut(s)	58, 85, 145, 292, 519, 534, 549, 694
MboII	GAAGA	2 cut(s)	68, 598
MflI	RGATCY	2 cut(s)	58, 85
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	4 cut(s)	30, 159, 465, 809
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	6 cut(s)	110, 221, 455, 533, 582, 813
MseI	TTAA	5 cut(s)	33, 66, 158, 609, 804
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	646
MvaI	CCWGG	1 cut(s)	646
MwoI	GCNNNNNNNGC	3 cut(s)	467, 746, 755
NdeII	GATC	8 cut(s)	58, 85, 145, 292, 519, 534, 549, 694
NheI	GCTAGC	2 cut(s)	313, 754
NlaIII	CATG	6 cut(s)	248, 487, 520, 636, 670, 680
NlaIV	GGNNCC	2 cut(s)	87, 643
NspI	RCATGY	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	334
PciI	ACATGT	1 cut(s)	666
PfeI	GAWTC	3 cut(s)	210, 231, 649
PscI	ACATGT	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	644
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	87, 643
PspPI	GGNCC	3 cut(s)	288, 391, 591
PsuI	RGATCY	2 cut(s)	58, 85
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	5 cut(s)	166, 275, 380, 479, 744
RsaNI	GTAC	5 cut(s)	165, 274, 379, 478, 743
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	5 cut(s)	33, 66, 158, 609, 804
Sau3AI	GATC	8 cut(s)	58, 85, 145, 292, 519, 534, 549, 694
Sau96I	GGNCC	3 cut(s)	288, 391, 591
ScrFI	CCNGG	1 cut(s)	646
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	2 cut(s)	249, 699
SfuI	TTCGAA	1 cut(s)	334
SinI	GGWCC	3 cut(s)	288, 391, 591
SmiMI	CAYNNNNRTG	1 cut(s)	707
Sse9I	AATT	4 cut(s)	30, 159, 465, 809
SsiI	CCGC	3 cut(s)	83, 389, 470
SspI	AATATT	1 cut(s)	123
SspMI	CTAG	5 cut(s)	80, 189, 314, 395, 755
StyD4I	CCNGG	1 cut(s)	644
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	4 cut(s)	224, 262, 408, 657
TaqI	TCGA	3 cut(s)	213, 226, 334
TasI	AATT	4 cut(s)	30, 159, 465, 809
TatI	WGTACW	1 cut(s)	273
TfiI	GAWTC	3 cut(s)	210, 231, 649
Tru1I	TTAA	5 cut(s)	33, 66, 158, 609, 804
Tru9I	TTAA	5 cut(s)	33, 66, 158, 609, 804
TscAI	CASTG	2 cut(s)	12, 756
TspDTI	ATGAA	3 cut(s)	599, 621, 779
TspGWI	ACGGA	2 cut(s)	78, 97
TspRI	CASTG	2 cut(s)	12, 756
VpaK11BI	GGWCC	3 cut(s)	288, 391, 591
XagI	CCTNNNNNAGG	1 cut(s)	423
XceI	RCATGY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmaJI	CCTAGG	1 cut(s)	394
XspI	CTAG	5 cut(s)	80, 189, 314, 395, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.