Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005885.1

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Reverse (-)

16993 .. 18572

Gene Structure 1580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005885.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgtcaactcttcatgccatttttatcaccgctatgtcattgtacttggtgttttggtcgaatctctattccgactattctgacaaccaactcaagccatttgttactttgcagagctccccattgtctacatttgtattgggggtttcagttgggtacttcctatctgaccttggcatgatcttttggttttaccctgctctaggtggattggaatatgtgattcatcatcttctttctatagcatctgtagcatatgcaatgttgactggggaaggacaactgtatacctacatggttcttatctctgagacaaccacccccggtatcaatttgagatggtatcttgacactgctggaatgaagaggactaaaacttatatgataaatggggttgtaatattcattgcatggctggttgccagaatccttctgttcatgtttctgttctaccatctctacctgcattatgaacaggtaaaacaaatgcacgccgttggacaatttttagctttcggggtgccaccgatactagctgtcatgaatttgatatggtttgggaagattttgaagggattgaagaagacattagcaaagaggcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

201

Amino Acids

22.98

Weight (kDa)

9.32

Isoelectric Point (pI)

47.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	471
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	2 cut(s)	128, 287
AciI	CCGC	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	544
AfaI	GTAC	2 cut(s)	44, 158
AfiI	CCNNNNNNNGG	1 cut(s)	203
AgsI	TTSAA	2 cut(s)	571, 580
AluBI	AGCT	3 cut(s)	117, 512, 536
AluI	AGCT	3 cut(s)	117, 512, 536
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	305
ApoI	RAATTY	1 cut(s)	544
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	590
Bbv12I	GWGCWC	1 cut(s)	119
BccI	CCATC	2 cut(s)	333, 462
BceAI	ACGGC	1 cut(s)	479
BcnI	CCSGG	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	203, 533
BfmI	CTRYAG	2 cut(s)	240, 249
BfuAI	ACCTGC	1 cut(s)	471
Bme1390I	CCNGG	1 cut(s)	324
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	324
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	590
BpuEI	CTTGAG	1 cut(s)	77
BpuMI	CCSGG	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	172, 322
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	2 cut(s)	267, 405
BseDI	CCNNGG	2 cut(s)	172, 322
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	2 cut(s)	267, 405
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	274
BshNI	GGYRCC	1 cut(s)	520
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmAI	GTCTC	1 cut(s)	305
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	522
BspMI	ACCTGC	1 cut(s)	471
BspT107I	GGYRCC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	267, 405
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	172, 322
BssMI	GATC	1 cut(s)	180
BssNAI	GTATAC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	172
Bst1107I	GTATAC	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	2 cut(s)	15, 359
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	1 cut(s)	309
BstENI	CCTNNNNNAGG	1 cut(s)	201
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	322
BstSFI	CTRYAG	2 cut(s)	240, 249
BstV2I	GAAGAC	1 cut(s)	590
BstZ17I	GTATAC	1 cut(s)	288
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
BveI	ACCTGC	1 cut(s)	471
Cac8I	GCNNGC	1 cut(s)	492
CciI	TCATGA	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	43, 157
CviAII	CATG	6 cut(s)	14, 178, 295, 411, 439, 541
CviJI	RGCY	5 cut(s)	97, 117, 415, 512, 536
CviKI_1	RGCY	5 cut(s)	97, 117, 415, 512, 536
CviQI	GTAC	2 cut(s)	43, 157
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eam1104I	CTCTTC	2 cut(s)	15, 359
EarI	CTCTTC	2 cut(s)	15, 359
Ecl136II	GAGCTC	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	172
Eco24I	GRGCYC	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	117
EcoICRI	GAGCTC	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	172
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	172
FaeI	CATG	6 cut(s)	17, 181, 298, 414, 442, 544
FatI	CATG	6 cut(s)	13, 177, 294, 410, 438, 540
FauNDI	CATATG	1 cut(s)	256
FblI	GTMKAC	2 cut(s)	128, 287
FriOI	GRGCYC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	203, 533
HapII	CCGG	1 cut(s)	324
Hin1II	CATG	6 cut(s)	17, 181, 298, 414, 442, 544
HincII	GTYRAC	2 cut(s)	6, 267
HindII	GTYRAC	2 cut(s)	6, 267
HinfI	GANTC	3 cut(s)	61, 223, 426
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	4 cut(s)	6, 129, 267, 288
Hpy188I	TCNGA	4 cut(s)	73, 82, 169, 310
Hpy188III	TCNNGA	2 cut(s)	347, 541
Hpy8I	GTNNAC	4 cut(s)	6, 129, 267, 288
HpyAV	CCTTC	3 cut(s)	269, 440, 565
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4V	TGCA	5 cut(s)	112, 260, 410, 466, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	6 cut(s)	17, 181, 298, 414, 442, 544
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	8 cut(s)	210, 255, 337, 342, 401, 436, 461, 476
LweI	GCATC	1 cut(s)	254
MaeI	CTAG	2 cut(s)	203, 533
MaeIII	GTNAC	1 cut(s)	103
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	5 cut(s)	224, 376, 574, 592, 595
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	3 cut(s)	331, 503, 544
MmeI	TCCRAC	2 cut(s)	96, 478
MnlI	CCTC	2 cut(s)	360, 591
MslI	CAYNNNNRTG	1 cut(s)	32
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	324
MwoI	GCNNNNNNNGC	1 cut(s)	251
NciI	CCSGG	1 cut(s)	324
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	6 cut(s)	17, 181, 298, 414, 442, 544
NlaIV	GGNNCC	1 cut(s)	522
PagI	TCATGA	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	61, 223, 426
Psp124BI	GAGCTC	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	522
RsaI	GTAC	2 cut(s)	44, 158
RsaNI	GTAC	2 cut(s)	43, 157
RseI	CAYNNNNRTG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	119
Sau3AI	GATC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	324
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	8 cut(s)	119, 174, 208, 293, 465, 480, 514, 538
SfaNI	GCATC	1 cut(s)	254
SfcI	CTRYAG	2 cut(s)	240, 249
SmiMI	CAYNNNNRTG	1 cut(s)	32
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	3 cut(s)	331, 503, 544
SsiI	CCGC	1 cut(s)	30
SspI	AATATT	1 cut(s)	402
SspMI	CTAG	2 cut(s)	203, 533
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	1 cut(s)	322
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	331, 503, 544
TatI	WGTACW	1 cut(s)	42
TfiI	GAWTC	3 cut(s)	61, 223, 426
TscAI	CASTG	1 cut(s)	358
TspDTI	ATGAA	6 cut(s)	215, 377, 394, 427, 486, 557
TspRI	CASTG	1 cut(s)	358
XagI	CCTNNNNNAGG	1 cut(s)	201
XapI	RAATTY	1 cut(s)	544
XmiI	GTMKAC	2 cut(s)	128, 287
XspI	CTAG	2 cut(s)	203, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.