Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Forward (+)

4940066 .. 4941900

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06700.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCAATCCAATCGTACGACATGTTGCTGAAGAATTTCACACTCTCCAGCCCTTATGTTCCCTACACGTCGATGATTGTGGGTATTTTCGCTTGCAAATTGGTTTATGATCTTAACCACTTGCTTAGTGCTGCTTACTTTAAGAGCTATTCCAACCTTTCAAAGATGCAACGTATTGAGTGGAATAATCGGGCTATATCAACTATTCATGCCCTTTTTATCACTGCTATGTCATTGTACTTGGTATTTTGGTCAGATCTTTATTCTGATCAGGAGCTTAAAGCTTTCGTTACGCTGCAGAGTTCCCCACTGTCTACATTTGCATTGGGGGTTTCAGTTGGGTACTTTCTCACTGACCTTGCAATGATCTTTTGGTTCTACCCTGCTCTAGGTGGAATGGAATATGTGGTTCATCATCTTCTTTCTTTAACATCAGTAGCATATGCTATGTTGACTGGCGAGGGACAGCTTTATACCTACATGGTTCTTATCTCTGAGACAACTACCCCCGGTATCAACTTGAGATGGTATCTTGACACGACTGGAATGAAGAGGTCCAGAACATATTTGATTAATGGGGTTGTAATATTCATTGCTTGGTTGGTAGCGAGAATAGTCTTATTCATGTATCTGTTCTACCATCTCTACTTGCACTATGAACAGGTTAAACAAATGCACATAATTGGGAGACTCTTAGCTTTAGCAGTGCCACCAATGCTAGCGGTCATGAATGTGATGTGGTTTTGGAAGATTTTGAAGGGGTTGAAGAAGACATTAGCAAAGAGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

264

Amino Acids

30.38

Weight (kDa)

9.39

Isoelectric Point (pI)

47.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	1 cut(s)	722
AcsI	RAATTY	1 cut(s)	34
AcuI	CTGAAG	1 cut(s)	50
AfaI	GTAC	3 cut(s)	17, 239, 344
AfiI	CCNNNNNNNGG	1 cut(s)	389
AflIII	ACRYGT	2 cut(s)	21, 66
AgsI	TTSAA	3 cut(s)	162, 757, 766
AjiI	CACGTC	1 cut(s)	69
AluBI	AGCT	5 cut(s)	147, 277, 284, 469, 698
AluI	AGCT	5 cut(s)	147, 277, 284, 469, 698
Alw26I	GTCTC	2 cut(s)	491, 682
ApeKI	GCWGC	2 cut(s)	131, 295
ApoI	RAATTY	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	573
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	555
AsuC2I	CCSGG	1 cut(s)	510
AsuNHI	GCTAGC	1 cut(s)	718
AvaII	GGWCC	1 cut(s)	555
BbsI	GAAGAC	1 cut(s)	776
BbvI	GCAGC	2 cut(s)	118, 282
BccI	CCATC	2 cut(s)	519, 648
BcgI	CGANNNNNNTGC	1 cut(s)	28
BclI	TGATCA	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	510
BcoDI	GTCTC	2 cut(s)	491, 682
BfaI	CTAG	2 cut(s)	389, 719
BfmI	CTRYAG	1 cut(s)	296
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	2 cut(s)	132, 296
BlsI	GCNGC	2 cut(s)	133, 297
Bme1390I	CCNGG	1 cut(s)	510
Bme18I	GGWCC	1 cut(s)	555
BmgBI	CACGTC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	555
BmrFI	CCNGG	1 cut(s)	510
BmsI	GCATC	1 cut(s)	156
BmtI	GCTAGC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	776
BpmI	CTGGAG	1 cut(s)	31
BpuEI	CTTGAG	1 cut(s)	541
BpuMI	CCSGG	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	508
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse1I	ACTGG	2 cut(s)	460, 547
Bse3DI	GCAATG	2 cut(s)	369, 591
BseDI	CCNNGG	1 cut(s)	508
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMI	GCAATG	2 cut(s)	369, 591
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	460, 547
BseXI	GCAGC	2 cut(s)	118, 282
BsiSI	CCGG	1 cut(s)	510
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	491, 682
BsmFI	GGGAC	1 cut(s)	477
Bsp143I	GATC	4 cut(s)	109, 256, 268, 366
BspACI	CCGC	1 cut(s)	722
BspCNI	CTCAG	1 cut(s)	487
BspHI	TCATGA	1 cut(s)	726
BspMAI	CTGCAG	1 cut(s)	300
BspOI	GCTAGC	1 cut(s)	722
BsrDI	GCAATG	2 cut(s)	369, 591
BsrI	ACTGG	2 cut(s)	460, 547
BssECI	CCNNGG	1 cut(s)	508
BssMI	GATC	4 cut(s)	109, 256, 268, 366
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	545
BstC8I	GCNNGC	2 cut(s)	94, 720
BstDEI	CTNAG	3 cut(s)	125, 495, 694
BstENI	CCTNNNNNAGG	1 cut(s)	387
BstKTI	GATC	4 cut(s)	112, 259, 271, 369
BstMAI	GTCTC	2 cut(s)	491, 682
BstMBI	GATC	4 cut(s)	109, 256, 268, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	715
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	508
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	2 cut(s)	118, 282
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	69
BtsI	GCAGTG	2 cut(s)	222, 711
BtsIMutI	CAGTG	4 cut(s)	222, 308, 351, 711
Cac8I	GCNNGC	2 cut(s)	94, 720
CciI	TCATGA	1 cut(s)	726
Cfr13I	GGNCC	1 cut(s)	555
Csp6I	GTAC	3 cut(s)	16, 238, 343
CviAII	CATG	5 cut(s)	22, 209, 481, 625, 727
CviJI	RGCY	7 cut(s)	51, 147, 194, 277, 284, 469, 698
CviKI_1	RGCY	7 cut(s)	51, 147, 194, 277, 284, 469, 698
CviQI	GTAC	3 cut(s)	16, 238, 343
DdeI	CTNAG	3 cut(s)	125, 495, 694
DpnI	GATC	4 cut(s)	111, 258, 270, 368
DpnII	GATC	4 cut(s)	109, 256, 268, 366
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	555
Eco57I	CTGAAG	1 cut(s)	50
EcoNI	CCTNNNNNAGG	1 cut(s)	387
FaeI	CATG	5 cut(s)	25, 212, 484, 628, 730
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	5 cut(s)	21, 208, 480, 624, 726
FauNDI	CATATG	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	132, 296
Fsp4HI	GCNGC	2 cut(s)	132, 296
FspBI	CTAG	2 cut(s)	389, 719
GluI	GCNGC	2 cut(s)	132, 296
GsuI	CTGGAG	1 cut(s)	31
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	5 cut(s)	25, 212, 484, 628, 730
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HindIII	AAGCTT	1 cut(s)	282
HinfI	GANTC	1 cut(s)	690
HpaII	CCGG	1 cut(s)	510
Hpy166II	GTNNAC	2 cut(s)	315, 453
Hpy188I	TCNGA	3 cut(s)	256, 268, 496
Hpy188III	TCNNGA	4 cut(s)	272, 533, 558, 727
Hpy8I	GTNNAC	2 cut(s)	315, 453
Hpy99I	CGWCG	1 cut(s)	73
HpyAV	CCTTC	1 cut(s)	751
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4IV	ACGT	2 cut(s)	68, 172
HpyCH4V	TGCA	7 cut(s)	96, 169, 298, 323, 362, 652, 676
HpyF10VI	GCNNNNNNNGC	1 cut(s)	715
HpyF3I	CTNAG	3 cut(s)	125, 495, 694
HpySE526I	ACGT	2 cut(s)	68, 172
Hsp92II	CATG	5 cut(s)	25, 212, 484, 628, 730
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	109, 256, 268, 366
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	8 cut(s)	61, 257, 396, 441, 523, 528, 571, 647
Lsp1109I	GCAGC	2 cut(s)	118, 282
LweI	GCATC	1 cut(s)	156
MaeI	CTAG	2 cut(s)	389, 719
MaeII	ACGT	2 cut(s)	68, 172
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	4 cut(s)	111, 258, 270, 368
MboI	GATC	4 cut(s)	109, 256, 268, 366
MboII	GAAGA	6 cut(s)	43, 410, 562, 760, 778, 781
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	3 cut(s)	34, 98, 681
MlyI	GAGTC	1 cut(s)	684
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	3 cut(s)	454, 546, 777
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	6 cut(s)	114, 141, 279, 428, 573, 666
MslI	CAYNNNNRTG	3 cut(s)	71, 227, 731
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	510
MwoI	GCNNNNNNNGC	1 cut(s)	715
NciI	CCSGG	1 cut(s)	510
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	4 cut(s)	109, 256, 268, 366
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	5 cut(s)	25, 212, 484, 628, 730
NspI	RCATGY	1 cut(s)	25
PagI	TCATGA	1 cut(s)	726
PciI	ACATGT	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	35
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	133, 297
PleI	GAGTC	1 cut(s)	684
PpsI	GAGTC	1 cut(s)	684
PscI	ACATGT	1 cut(s)	21
PshBI	ATTAAT	1 cut(s)	573
PspLI	CGTACG	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	555
PstI	CTGCAG	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	256
RsaI	GTAC	3 cut(s)	17, 239, 344
RsaNI	GTAC	3 cut(s)	16, 238, 343
RseI	CAYNNNNRTG	3 cut(s)	71, 227, 731
SaqAI	TTAA	6 cut(s)	114, 141, 279, 428, 573, 666
SatI	GCNGC	2 cut(s)	132, 296
Sau3AI	GATC	4 cut(s)	109, 256, 268, 366
Sau96I	GGNCC	1 cut(s)	555
SchI	GAGTC	1 cut(s)	684
ScrFI	CCNGG	1 cut(s)	510
SfaNI	GCATC	1 cut(s)	156
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	555
SmiMI	CAYNNNNRTG	3 cut(s)	71, 227, 731
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	3 cut(s)	34, 98, 681
SsiI	CCGC	1 cut(s)	722
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	2 cut(s)	389, 719
StyD4I	CCNGG	1 cut(s)	508
TaaI	ACNGT	1 cut(s)	312
TaiI	ACGT	2 cut(s)	71, 175
TaqI	TCGA	1 cut(s)	71
TasI	AATT	3 cut(s)	34, 98, 681
TatI	WGTACW	1 cut(s)	237
Tru1I	TTAA	6 cut(s)	114, 141, 279, 428, 573, 666
Tru9I	TTAA	6 cut(s)	114, 141, 279, 428, 573, 666
TscAI	CASTG	4 cut(s)	229, 315, 358, 711
TseI	GCWGC	2 cut(s)	131, 295
TspDTI	ATGAA	7 cut(s)	197, 401, 563, 580, 613, 672, 743
TspRI	CASTG	4 cut(s)	229, 315, 358, 711
VpaK11BI	GGWCC	1 cut(s)	555
VspI	ATTAAT	1 cut(s)	573
XagI	CCTNNNNNAGG	1 cut(s)	387
XapI	RAATTY	1 cut(s)	34
XceI	RCATGY	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	2 cut(s)	389, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.