Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Forward (+)

33327389 .. 33331968

Gene Structure 4580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1237000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAATGTCTACAAAATCGGTTATGGCGATCAAATCTTACCAAAATCAGGCCGGCGTTCTTGTTAAAAACTACTTGCTAGCGGATCCCTTCATACCATACACTTCCATTATTGGAGGCATAATTTTGTGCAAAATGGTCTATGATCTTACCCAATTAATTAGTACCTTTTACATTAAGGCTTATGGTAGTCTTACAAAAATCCAACGAATTGAGTGGAACAGTCGTGGTATCTCCAGTATTCATGCCATTTTTATCACAGCTCTGTCCTTGTACTTTGTGTTCGGGTCCGATCTCTTTTCTGACCAACAGCACCTTGGCCTTATTACATTTCGAAGCTCACCACTGTCTGTTTTTGGGTTAGGGGTCTCTGTTGGGTACTTCTGTGCGGATCTGGGAATGCTTTTATGGCTATATCCTTCTTTAGGTGGAATCGAGTATGTTTTCCATCACTCACTGTCTGGAATTGCAGTAGCATACTCCATGTTTTCTGGGGAAGGGCAACTTTATACATACATGATCCTCATCTCTGAGATCACTACGCCAGAGATCAATATGAGATGGTATCTTGATACAGCTGGTCTGAAGAGGTCCAGCGCATATCTCCTAAACGGCATTGTGATATTTTTATTATGGCTGGCGGCAAGAATTCTGCTGTTCGGTTACATGTTTTACCATGTTTACTTGCACTATGATATGATCATCCAGATGCACATCTTCGGATATCTTTTGGTCTTTATCGTGCCAACAGTGCTAGCGGTAATGAATTTGATGTGGTTTGGAAAGATTATCAAGGGATTGATGAAGCAATTGGCCAAGATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

276

Amino Acids

31.23

Weight (kDa)

8.87

Isoelectric Point (pI)

44.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	72 - 265	2.3e-28	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	4 cut(s)	83, 389, 641, 758
AclWI	GGATC	4 cut(s)	80, 93, 399, 514
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	2 cut(s)	648, 766
AcuI	CTGAAG	1 cut(s)	605
AfaI	GTAC	3 cut(s)	166, 275, 380
AfiI	CCNNNNNNNGG	2 cut(s)	49, 425
AflIII	ACRYGT	1 cut(s)	666
AluBI	AGCT	3 cut(s)	263, 339, 578
AluI	AGCT	3 cut(s)	263, 339, 578
Alw26I	GTCTC	1 cut(s)	373
AlwI	GGATC	4 cut(s)	80, 93, 399, 514
AoxI	GGCC	3 cut(s)	51, 319, 813
ApoI	RAATTY	2 cut(s)	648, 766
AseI	ATTAAT	1 cut(s)	158
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	288, 591
AsuHPI	GGTGA	1 cut(s)	333
AsuII	TTCGAA	1 cut(s)	334
AsuNHI	GCTAGC	2 cut(s)	79, 754
AvaII	GGWCC	2 cut(s)	288, 591
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BalI	TGGCCA	1 cut(s)	815
BamHI	GGATCC	1 cut(s)	85
BccI	CCATC	2 cut(s)	456, 555
BceAI	ACGGC	1 cut(s)	628
BclI	TGATCA	1 cut(s)	699
BcoDI	GTCTC	1 cut(s)	373
BfaI	CTAG	2 cut(s)	80, 755
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme18I	GGWCC	2 cut(s)	288, 591
BmgT120I	GGNCC	2 cut(s)	288, 591
BmiI	GGNNCC	2 cut(s)	87, 289
BmsI	GCATC	2 cut(s)	699, 810
BmtI	GCTAGC	2 cut(s)	83, 758
BpmI	CTGGAG	1 cut(s)	220
Bpu14I	TTCGAA	1 cut(s)	334
BsaBI	GATNNNNATC	2 cut(s)	524, 713
BsaI	GGTCTC	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 425
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	237
Bse8I	GATNNNNATC	2 cut(s)	524, 713
BseDI	CCNNGG	1 cut(s)	316
BseGI	GGATG	1 cut(s)	702
BseJI	GATNNNNATC	2 cut(s)	524, 713
BseLI	CCNNNNNNNGG	2 cut(s)	49, 425
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	53, 321, 815
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	2 cut(s)	49, 425
BsmAI	GTCTC	1 cut(s)	373
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	3 cut(s)	53, 321, 815
Bso31I	GGTCTC	1 cut(s)	373
Bsp119I	TTCGAA	1 cut(s)	334
Bsp143I	GATC	9 cut(s)	30, 85, 145, 292, 391, 519, 534, 549, 699
BspACI	CCGC	4 cut(s)	83, 389, 641, 758
BspANI	GGCC	3 cut(s)	53, 321, 815
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	2 cut(s)	87, 289
BspOI	GCTAGC	2 cut(s)	83, 758
BspPI	GGATC	4 cut(s)	80, 93, 399, 514
BspT104I	TTCGAA	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	316
BssMI	GATC	9 cut(s)	30, 85, 145, 292, 391, 519, 534, 549, 699
BssT1I	CCWWGG	1 cut(s)	316
Bst4CI	ACNGT	4 cut(s)	224, 348, 459, 751
Bst6I	CTCTTC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	334
BstC8I	GCNNGC	4 cut(s)	55, 81, 639, 756
BstDEI	CTNAG	1 cut(s)	531
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	9 cut(s)	33, 88, 148, 295, 394, 522, 537, 552, 702
BstMAI	GTCTC	1 cut(s)	373
BstMBI	GATC	9 cut(s)	30, 85, 145, 292, 391, 519, 534, 549, 699
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 751
BstNSI	RCATGY	1 cut(s)	670
BstX2I	RGATCY	2 cut(s)	85, 391
BstYI	RGATCY	2 cut(s)	85, 391
BsuRI	GGCC	3 cut(s)	53, 321, 815
BtsCI	GGATG	1 cut(s)	702
BtsIMutI	CAGTG	3 cut(s)	344, 455, 756
Cac8I	GCNNGC	4 cut(s)	55, 81, 639, 756
CfoI	GCGC	1 cut(s)	599
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	288, 591
Csp6I	GTAC	3 cut(s)	165, 274, 379
CviAII	CATG	5 cut(s)	245, 484, 517, 667, 677
CviJI	RGCY	9 cut(s)	53, 182, 263, 321, 339, 412, 578, 637, 815
CviKI_1	RGCY	9 cut(s)	53, 182, 263, 321, 339, 412, 578, 637, 815
CviQI	GTAC	3 cut(s)	165, 274, 379
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	9 cut(s)	32, 87, 147, 294, 393, 521, 536, 551, 701
DpnII	GATC	9 cut(s)	30, 85, 145, 292, 391, 519, 534, 549, 699
EaeI	YGGCCR	1 cut(s)	813
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco130I	CCWWGG	1 cut(s)	316
Eco31I	GGTCTC	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	288, 591
Eco57I	CTGAAG	1 cut(s)	605
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	648
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	316
FaeI	CATG	5 cut(s)	248, 487, 520, 670, 680
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	5 cut(s)	244, 483, 516, 666, 676
FbaI	TGATCA	1 cut(s)	699
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	1 cut(s)	689
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	2 cut(s)	80, 755
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	3 cut(s)	53, 321, 815
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	5 cut(s)	248, 487, 520, 670, 680
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HinfI	GANTC	1 cut(s)	432
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	2 cut(s)	12, 682
Hpy188I	TCNGA	5 cut(s)	292, 304, 532, 585, 722
Hpy188III	TCNNGA	3 cut(s)	462, 569, 706
Hpy8I	GTNNAC	2 cut(s)	12, 682
HpyAV	CCTTC	3 cut(s)	100, 429, 491
HpyCH4III	ACNGT	4 cut(s)	224, 348, 459, 751
HpyCH4V	TGCA	5 cut(s)	132, 470, 688, 712, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 751
HpyF3I	CTNAG	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	248, 487, 520, 670, 680
HspAI	GCGC	1 cut(s)	597
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	9 cut(s)	30, 85, 145, 292, 391, 519, 534, 549, 699
LweI	GCATC	2 cut(s)	699, 810
MaeI	CTAG	2 cut(s)	80, 755
MaeIII	GTNAC	1 cut(s)	662
MalI	GATC	9 cut(s)	32, 87, 147, 294, 393, 521, 536, 551, 701
MboI	GATC	9 cut(s)	30, 85, 145, 292, 391, 519, 534, 549, 699
MboII	GAAGA	2 cut(s)	598, 709
MfeI	CAATTG	1 cut(s)	809
MflI	RGATCY	2 cut(s)	85, 391
MlsI	TGGCCA	1 cut(s)	815
MluCI	AATT	8 cut(s)	123, 155, 159, 210, 465, 648, 766, 809
MluNI	TGGCCA	1 cut(s)	815
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	110, 533, 582
Mox20I	TGGCCA	1 cut(s)	815
MroNI	GCCGGC	1 cut(s)	53
MscI	TGGCCA	1 cut(s)	815
MseI	TTAA	3 cut(s)	66, 158, 177
MslI	CAYNNNNRTG	1 cut(s)	707
Msp20I	TGGCCA	1 cut(s)	815
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	54
MunI	CAATTG	1 cut(s)	809
Mva1269I	GAATGC	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	409, 751
NaeI	GCCGGC	1 cut(s)	55
NdeII	GATC	9 cut(s)	30, 85, 145, 292, 391, 519, 534, 549, 699
NgoMIV	GCCGGC	1 cut(s)	53
NheI	GCTAGC	2 cut(s)	79, 754
NlaIII	CATG	5 cut(s)	248, 487, 520, 670, 680
NlaIV	GGNNCC	2 cut(s)	87, 289
NspI	RCATGY	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	334
PciI	ACATGT	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PctI	GAATGC	1 cut(s)	405
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	432
PkrI	GCNGC	1 cut(s)	643
PscI	ACATGT	1 cut(s)	666
PshBI	ATTAAT	1 cut(s)	158
PspN4I	GGNNCC	2 cut(s)	87, 289
PspPI	GGNCC	2 cut(s)	288, 591
PsrI	GAACNNNNNNTAC	2 cut(s)	266, 298
PsuI	RGATCY	2 cut(s)	85, 391
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	3 cut(s)	166, 275, 380
RsaNI	GTAC	3 cut(s)	165, 274, 379
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	3 cut(s)	66, 158, 177
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	9 cut(s)	30, 85, 145, 292, 391, 519, 534, 549, 699
Sau96I	GGNCC	2 cut(s)	288, 591
SetI	ASST	7 cut(s)	170, 265, 318, 341, 430, 580, 593
SfaNI	GCATC	2 cut(s)	699, 810
SfuI	TTCGAA	1 cut(s)	334
SinI	GGWCC	2 cut(s)	288, 591
SmiMI	CAYNNNNRTG	1 cut(s)	707
Sse9I	AATT	8 cut(s)	123, 155, 159, 210, 465, 648, 766, 809
SsiI	CCGC	4 cut(s)	83, 389, 641, 758
SspMI	CTAG	2 cut(s)	80, 755
StyI	CCWWGG	1 cut(s)	316
TaaI	ACNGT	4 cut(s)	224, 348, 459, 751
TaqI	TCGA	2 cut(s)	334, 435
TasI	AATT	8 cut(s)	123, 155, 159, 210, 465, 648, 766, 809
TatI	WGTACW	1 cut(s)	273
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	3 cut(s)	66, 158, 177
Tru9I	TTAA	3 cut(s)	66, 158, 177
TscAI	CASTG	3 cut(s)	351, 462, 756
TspDTI	ATGAA	4 cut(s)	82, 233, 779, 818
TspRI	CASTG	3 cut(s)	351, 462, 756
VpaK11BI	GGWCC	2 cut(s)	288, 591
VspI	ATTAAT	1 cut(s)	158
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	2 cut(s)	648, 766
XceI	RCATGY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	2 cut(s)	80, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.