Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Reverse (-)

5604731 .. 5609455

Gene Structure 4725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G107300.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGAAGTGTCTACAAAGACAGTTATGGCTATCAAGTCTTACCAAAATCAAGCGGGAGTGCTGGTTAAAAACTATTTATTAGCGGATCCCTTCATACCATATACTTCCATTATTGGAGGCATAATTTTGTGCAAAATGGTATATGATCTTACCCAGTTAATTAGTAGTTTTTACATCAAGACTTATGCTGGCCTTACAAAAATCCAACGAATTGAGTGGAACAGTCGAGGTATCTCCAGTATTCATGCCATTTTTATCACAGCTCTATCCTTACACTTTGTGTTCTGGTCCGATCTCTTTTCTGACCAACCTCATGCTGGCCTTGTTACATTTCGAAGCTCACCACTGTCCGTTTTTGGATTAGGGGTTTCTGTTGGGTACTTCTGTGCGGATCTAGGAATGCTATTATGGCTATACCCTTCTTTAGGTGGAATGGAATATGTTTTCCATCACTCACTTTCTGGAATTGCAGTAGCTTATTCCATGTTTTCTGGAGAAGGGCAACTTTATACATACATGATCCTCATCTCTGAGATCACTACTCCAGAGATCAATATGAGATGGTATCTTGATACAGCTGGTATGAAGAGGTCCAGCGCATATCTCATAAACGGCATTGTGATATTTTTATCATGGCTGGCTGCAAGAATTCTGCTGTTTGGTTACATGTTTTACCATGTTTACTTGCACTATGATCAGGTCATCCAGATGCACACCTTTGGATATCTGCTGGTCTTTGTTGTGCCATCAGTGCTAGCAATAATGAACTTGATGTGGTTTGGAAAGATTATCAAGGGATTGATCAAGCAATTAGCTAAGATGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

276

Amino Acids

31.18

Weight (kDa)

8.89

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	3 cut(s)	53, 83, 389
AclWI	GGATC	4 cut(s)	80, 93, 399, 514
AcsI	RAATTY	1 cut(s)	648
AdeI	CACNNNGTG	1 cut(s)	280
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	2 cut(s)	317, 425
AflIII	ACRYGT	1 cut(s)	666
AluBI	AGCT	5 cut(s)	263, 339, 476, 578, 815
AluI	AGCT	5 cut(s)	263, 339, 476, 578, 815
AlwI	GGATC	4 cut(s)	80, 93, 399, 514
AoxI	GGCC	2 cut(s)	190, 319
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	1 cut(s)	648
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	288, 591
AsuHPI	GGTGA	1 cut(s)	333
AsuII	TTCGAA	1 cut(s)	334
AsuNHI	GCTAGC	1 cut(s)	754
AvaII	GGWCC	2 cut(s)	288, 591
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BamHI	GGATCC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	3 cut(s)	456, 555, 754
BceAI	ACGGC	1 cut(s)	628
BclI	TGATCA	2 cut(s)	694, 801
BfaI	CTAG	2 cut(s)	395, 755
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme18I	GGWCC	2 cut(s)	288, 591
BmgT120I	GGNCC	2 cut(s)	288, 591
BmiI	GGNNCC	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	699, 810
BmtI	GCTAGC	1 cut(s)	758
BmuI	ACTGGG	1 cut(s)	148
BpmI	CTGGAG	3 cut(s)	220, 513, 528
Bpu14I	TTCGAA	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 425
Bse1I	ACTGG	2 cut(s)	154, 237
Bse8I	GATNNNNATC	1 cut(s)	524
BseGI	GGATG	1 cut(s)	702
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	2 cut(s)	317, 425
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	2 cut(s)	154, 237
BseXI	GCAGC	1 cut(s)	628
BshFI	GGCC	2 cut(s)	192, 321
BslI	CCNNNNNNNGG	2 cut(s)	317, 425
BsmI	GAATGC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	192, 321
Bsp119I	TTCGAA	1 cut(s)	334
Bsp143I	GATC	9 cut(s)	85, 145, 292, 391, 519, 534, 549, 694, 801
BspACI	CCGC	3 cut(s)	53, 83, 389
BspANI	GGCC	2 cut(s)	192, 321
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	1 cut(s)	87
BspOI	GCTAGC	1 cut(s)	758
BspPI	GGATC	4 cut(s)	80, 93, 399, 514
BspT104I	TTCGAA	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	154, 237
BssMI	GATC	9 cut(s)	85, 145, 292, 391, 519, 534, 549, 694, 801
Bst4CI	ACNGT	3 cut(s)	22, 224, 348
Bst6I	CTCTTC	1 cut(s)	581
BstBI	TTCGAA	1 cut(s)	334
BstC8I	GCNNGC	4 cut(s)	190, 319, 639, 756
BstDEI	CTNAG	2 cut(s)	531, 816
BstENI	CCTNNNNNAGG	1 cut(s)	423
BstF5I	GGATG	1 cut(s)	702
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	9 cut(s)	88, 148, 295, 394, 522, 537, 552, 697, 804
BstMBI	GATC	9 cut(s)	85, 145, 292, 391, 519, 534, 549, 694, 801
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 751
BstNSI	RCATGY	1 cut(s)	670
BstV1I	GCAGC	1 cut(s)	628
BstX2I	RGATCY	2 cut(s)	85, 391
BstYI	RGATCY	2 cut(s)	85, 391
BsuRI	GGCC	2 cut(s)	192, 321
BtsCI	GGATG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	344, 756
Cac8I	GCNNGC	4 cut(s)	190, 319, 639, 756
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	288, 591
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	7 cut(s)	245, 314, 484, 517, 633, 667, 677
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	531, 816
DpnI	GATC	9 cut(s)	87, 147, 294, 393, 521, 536, 551, 696, 803
DpnII	GATC	9 cut(s)	85, 145, 292, 391, 519, 534, 549, 694, 801
DraIII	CACNNNGTG	1 cut(s)	280
Eam1104I	CTCTTC	1 cut(s)	581
EarI	CTCTTC	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	2 cut(s)	288, 591
EcoNI	CCTNNNNNAGG	1 cut(s)	423
EcoRI	GAATTC	1 cut(s)	648
EcoRV	GATATC	1 cut(s)	725
FaeI	CATG	7 cut(s)	248, 317, 487, 520, 636, 670, 680
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FatI	CATG	7 cut(s)	244, 313, 483, 516, 632, 666, 676
FauI	CCCGC	1 cut(s)	46
FbaI	TGATCA	2 cut(s)	694, 801
FblI	GTMKAC	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	1 cut(s)	689
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	2 cut(s)	395, 755
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	3 cut(s)	220, 513, 528
HaeIII	GGCC	2 cut(s)	192, 321
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	7 cut(s)	248, 317, 487, 520, 636, 670, 680
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HphI	GGTGA	1 cut(s)	333
Hpy166II	GTNNAC	2 cut(s)	12, 682
Hpy188I	TCNGA	3 cut(s)	292, 304, 532
Hpy188III	TCNNGA	6 cut(s)	178, 462, 492, 545, 569, 706
Hpy8I	GTNNAC	2 cut(s)	12, 682
HpyAV	CCTTC	3 cut(s)	100, 429, 491
HpyCH4III	ACNGT	3 cut(s)	22, 224, 348
HpyCH4V	TGCA	6 cut(s)	132, 470, 644, 688, 712, 823
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 751
HpyF3I	CTNAG	2 cut(s)	531, 816
Hsp92II	CATG	7 cut(s)	248, 317, 487, 520, 636, 670, 680
HspAI	GCGC	1 cut(s)	597
Ksp22I	TGATCA	2 cut(s)	694, 801
Kzo9I	GATC	9 cut(s)	85, 145, 292, 391, 519, 534, 549, 694, 801
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	2 cut(s)	699, 810
MaeI	CTAG	2 cut(s)	395, 755
MaeIII	GTNAC	2 cut(s)	325, 662
MalI	GATC	9 cut(s)	87, 147, 294, 393, 521, 536, 551, 696, 803
MboI	GATC	9 cut(s)	85, 145, 292, 391, 519, 534, 549, 694, 801
MboII	GAAGA	1 cut(s)	598
MflI	RGATCY	2 cut(s)	85, 391
MluCI	AATT	6 cut(s)	123, 159, 210, 465, 648, 809
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	5 cut(s)	110, 221, 321, 533, 582
MseI	TTAA	2 cut(s)	66, 158
MslI	CAYNNNNRTG	1 cut(s)	707
MspA1I	CMGCKG	1 cut(s)	578
Mva1269I	GAATGC	1 cut(s)	405
MwoI	GCNNNNNNNGC	2 cut(s)	409, 751
NdeII	GATC	9 cut(s)	85, 145, 292, 391, 519, 534, 549, 694, 801
NheI	GCTAGC	1 cut(s)	754
NlaIII	CATG	7 cut(s)	248, 317, 487, 520, 636, 670, 680
NlaIV	GGNNCC	1 cut(s)	87
NspI	RCATGY	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	334
PciI	ACATGT	1 cut(s)	666
PctI	GAATGC	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	643
PscI	ACATGT	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	288, 591
PsuI	RGATCY	2 cut(s)	85, 391
PvuII	CAGCTG	1 cut(s)	578
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	2 cut(s)	66, 158
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	9 cut(s)	85, 145, 292, 391, 519, 534, 549, 694, 801
Sau96I	GGNCC	2 cut(s)	288, 591
SfaNI	GCATC	2 cut(s)	699, 810
SfuI	TTCGAA	1 cut(s)	334
SinI	GGWCC	2 cut(s)	288, 591
SmiMI	CAYNNNNRTG	1 cut(s)	707
Sse9I	AATT	6 cut(s)	123, 159, 210, 465, 648, 809
SsiI	CCGC	3 cut(s)	53, 83, 389
SspMI	CTAG	2 cut(s)	395, 755
TaaI	ACNGT	3 cut(s)	22, 224, 348
TaqI	TCGA	2 cut(s)	226, 334
TasI	AATT	6 cut(s)	123, 159, 210, 465, 648, 809
Tru1I	TTAA	2 cut(s)	66, 158
Tru9I	TTAA	2 cut(s)	66, 158
TscAI	CASTG	2 cut(s)	351, 756
TseI	GCWGC	1 cut(s)	641
TspDTI	ATGAA	4 cut(s)	82, 233, 599, 779
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	2 cut(s)	351, 756
VpaK11BI	GGWCC	2 cut(s)	288, 591
XagI	CCTNNNNNAGG	1 cut(s)	423
XapI	RAATTY	1 cut(s)	648
XceI	RCATGY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	2 cut(s)	395, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.