Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Reverse (-)

19512950 .. 19516154

Gene Structure 3205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G178700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGGCAATCCAATCCTACGAATCCTACGACATGTTGCTTAAGCAATTCCTACTCCCGCACCCTTTTGTCCCATATATATCTATGCTCGTGGGTATGTTCGCCTGCAAATTGGTTTATGATCTCAACCACTTGCTAAGTGCTGCTTACTTTAAGAGCTATTCCAACCTTTCAAAGATGCAACGCATTGAGTGGAATAATCGGGCAATCTCAACTGTCCATGCCCTTTTTATCACAGCTATGTCATTGTACTTGGTGTTTTGGTCAGATCTTTATTCTGACCAACAGCTCAACGCTTTTGTTACGTTGCAGAGCTCCCCGCTGTCTACATTTGCCTTGGGGGTCTCAGTTGGGTACTTTCTAACCGACCTTGGGATGATCTTTTGGTTTTACCCTGCTCTTGGTGGACTGGAGTATGTGGTTCATCATCTTCTTTCTGTAGCATCAGTAGCATATGCTATGTTGACTGGGGAGGGACAGCTTTATACCTACATGGTTCTTATCTCTGAGACAACCACCCCTGGTATCAACTTGAGATGGTATCTTGACACGACTGGAATGAAGGGGTCTAGAACATATTTGATTAATGGGGTTGTAATTTTCATTGCTTGGTTGGTTGCAAGAATACTCCTGTTCATGTATCTGTTCTACCATCTGTACTTGCACTATCAACAGGTTAAGCAAATGCACATCATTGGGAAATTTTTAGCTTTCGGAGTGCCACCAATCCTAGCGGTCATGAATGTGATGTGGTTTGGCAAGATTTTCAAGGGATTGAAGAAGACATTAGCAAAGAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

267

Amino Acids

30.51

Weight (kDa)

9.2

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	323
AciI	CCGC	3 cut(s)	56, 317, 731
AcsI	RAATTY	1 cut(s)	698
AfaI	GTAC	3 cut(s)	248, 353, 656
AfiI	CCNNNNNNNGG	2 cut(s)	369, 398
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	30
AgsI	TTSAA	3 cut(s)	171, 766, 775
AjnI	CCWGG	1 cut(s)	517
AluBI	AGCT	6 cut(s)	156, 236, 286, 312, 478, 707
AluI	AGCT	6 cut(s)	156, 236, 286, 312, 478, 707
Alw21I	GWGCWC	1 cut(s)	314
Alw26I	GTCTC	2 cut(s)	346, 500
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	698
AseI	ATTAAT	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	785
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	528, 657
BciT130I	CCWGG	1 cut(s)	519
BcoDI	GTCTC	2 cut(s)	346, 500
BfaI	CTAG	2 cut(s)	567, 728
BfmI	CTRYAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	38
BglII	AGATCT	1 cut(s)	265
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	519
BmrFI	CCNGG	1 cut(s)	519
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	2 cut(s)	165, 449
BmuI	ACTGGG	1 cut(s)	474
BpiI	GAAGAC	1 cut(s)	785
BpmI	CTGGAG	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	550
BsaI	GGTCTC	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	333, 367, 517
Bsc4I	CCNNNNNNNGG	2 cut(s)	369, 398
Bse1I	ACTGG	3 cut(s)	411, 469, 556
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	3 cut(s)	333, 367, 517
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	2 cut(s)	369, 398
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	2 cut(s)	357, 495
BseNI	ACTGG	3 cut(s)	411, 469, 556
BseXI	GCAGC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	314
BslFI	GGGAC	2 cut(s)	53, 486
BslI	CCNNNNNNNGG	2 cut(s)	369, 398
BsmAI	GTCTC	2 cut(s)	346, 500
BsmFI	GGGAC	2 cut(s)	53, 486
Bso31I	GGTCTC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	118, 265, 375
BspACI	CCGC	3 cut(s)	56, 317, 731
BspCNI	CTCAG	2 cut(s)	356, 496
BspHI	TCATGA	1 cut(s)	735
BspTI	CTTAAG	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	411, 469, 556
BssECI	CCNNGG	3 cut(s)	333, 367, 517
BssMI	GATC	3 cut(s)	118, 265, 375
BssSI	CACGAG	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	333, 367
Bst2BI	CACGAG	1 cut(s)	86
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	1 cut(s)	214
BstAFI	CTTAAG	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	134, 343, 504
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	121, 268, 378
BstMAI	GTCTC	2 cut(s)	346, 500
BstMBI	GATC	3 cut(s)	118, 265, 375
BstMWI	GCNNNNNNNGC	1 cut(s)	446
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	785
BstX2I	RGATCY	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	265
BtsCI	GGATG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	103
CciI	TCATGA	1 cut(s)	735
Csp6I	GTAC	3 cut(s)	247, 352, 655
CviAII	CATG	5 cut(s)	31, 218, 490, 634, 736
CviJI	RGCY	6 cut(s)	156, 236, 286, 312, 478, 707
CviKI_1	RGCY	6 cut(s)	156, 236, 286, 312, 478, 707
CviQI	GTAC	3 cut(s)	247, 352, 655
DdeI	CTNAG	3 cut(s)	134, 343, 504
DpnI	GATC	3 cut(s)	120, 267, 377
DpnII	GATC	3 cut(s)	118, 265, 375
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	2 cut(s)	333, 367
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	346
Eco53kI	GAGCTC	1 cut(s)	312
EcoICRI	GAGCTC	1 cut(s)	312
EcoRII	CCWGG	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	333, 367
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	2 cut(s)	333, 367
FaeI	CATG	5 cut(s)	34, 221, 493, 637, 739
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FaqI	GGGAC	2 cut(s)	53, 486
FatI	CATG	5 cut(s)	30, 217, 489, 633, 735
FauI	CCCGC	2 cut(s)	63, 324
FauNDI	CATATG	1 cut(s)	451
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	141
FspBI	CTAG	2 cut(s)	567, 728
GluI	GCNGC	1 cut(s)	141
GsuI	CTGGAG	1 cut(s)	428
Hin1II	CATG	5 cut(s)	34, 221, 493, 637, 739
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	2 cut(s)	20, 793
Hpy166II	GTNNAC	3 cut(s)	324, 404, 462
Hpy188I	TCNGA	4 cut(s)	265, 277, 505, 713
Hpy188III	TCNNGA	3 cut(s)	542, 567, 736
Hpy8I	GTNNAC	3 cut(s)	324, 404, 462
HpyAV	CCTTC	1 cut(s)	553
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	302
HpyCH4V	TGCA	6 cut(s)	105, 178, 307, 617, 661, 685
HpyF10VI	GCNNNNNNNGC	1 cut(s)	446
HpyF3I	CTNAG	3 cut(s)	134, 343, 504
HpySE526I	ACGT	1 cut(s)	302
Hsp92II	CATG	5 cut(s)	34, 221, 493, 637, 739
Kzo9I	GATC	3 cut(s)	118, 265, 375
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	9 cut(s)	115, 392, 405, 450, 504, 531, 537, 641, 656
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	165, 449
MaeI	CTAG	2 cut(s)	567, 728
MaeII	ACGT	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	298
MalI	GATC	3 cut(s)	120, 267, 377
MboI	GATC	3 cut(s)	118, 265, 375
MboII	GAAGA	3 cut(s)	419, 787, 790
MflI	RGATCY	1 cut(s)	265
MhlI	GDGCHC	1 cut(s)	314
MluCI	AATT	4 cut(s)	44, 107, 594, 698
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	1 cut(s)	463
MseI	TTAA	4 cut(s)	39, 150, 582, 675
MslI	CAYNNNNRTG	2 cut(s)	236, 740
MspA1I	CMGCKG	1 cut(s)	319
MspCI	CTTAAG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	519
MvaI	CCWGG	1 cut(s)	519
MwoI	GCNNNNNNNGC	1 cut(s)	446
NdeI	CATATG	1 cut(s)	451
NdeII	GATC	3 cut(s)	118, 265, 375
NlaIII	CATG	5 cut(s)	34, 221, 493, 637, 739
NspI	RCATGY	1 cut(s)	34
PagI	TCATGA	1 cut(s)	735
PciI	ACATGT	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	142
PscI	ACATGT	1 cut(s)	30
PshBI	ATTAAT	1 cut(s)	582
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PsuI	RGATCY	1 cut(s)	265
RsaI	GTAC	3 cut(s)	248, 353, 656
RsaNI	GTAC	3 cut(s)	247, 352, 655
RseI	CAYNNNNRTG	2 cut(s)	236, 740
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	39, 150, 582, 675
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	3 cut(s)	118, 265, 375
ScrFI	CCNGG	1 cut(s)	519
SduI	GDGCHC	1 cut(s)	314
SfaNI	GCATC	2 cut(s)	165, 449
SfcI	CTRYAG	1 cut(s)	435
SmiMI	CAYNNNNRTG	2 cut(s)	236, 740
SmlI	CTYRAG	2 cut(s)	38, 529
SmoI	CTYRAG	2 cut(s)	38, 529
Sse9I	AATT	4 cut(s)	44, 107, 594, 698
SsiI	CCGC	3 cut(s)	56, 317, 731
SspMI	CTAG	2 cut(s)	567, 728
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	2 cut(s)	333, 367
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	305
TasI	AATT	4 cut(s)	44, 107, 594, 698
TatI	WGTACW	2 cut(s)	246, 654
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	4 cut(s)	39, 150, 582, 675
Tru9I	TTAA	4 cut(s)	39, 150, 582, 675
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	5 cut(s)	410, 572, 589, 622, 752
Vha464I	CTTAAG	1 cut(s)	38
VspI	ATTAAT	1 cut(s)	582
XapI	RAATTY	1 cut(s)	698
XbaI	TCTAGA	1 cut(s)	566
XceI	RCATGY	1 cut(s)	34
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	2 cut(s)	567, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.