Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001172

Physical Location & Seq

Genomic Coordinates Forward (+)

22878711 .. 22880268

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g19820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGAAATGTCTACAAAGACAGTTATGGCGATCGAATCTCACAAAAATCAGGCCGGAGTTCTTGTTAAAAACTACTTGCTAGCGATCGATCCCTTCATACCATACACTTCCATTATTGGAGGCATAATTTTGTGCAAAATGGTATATGATCTTACCCAATTAATTAGTACCTTTTACATTAAGGCTTATGGTGGTCTTACAAAAATCCAACGAATTGAGTGGAACAGTCGTGGTATCTCCAGTATTCATGCCATTTTTATCACAGCTCTGTCCTTGTACTTTGTGTTTGGGTCCGATCTCTTTTCTGACCAACAGCACCTTGGCCTTATTACATTTCGAAGCTCACCACTGTCTGTTTTTGGGTTAGGGGTCTCAGTTGGGTACTTCTGTGCGGATCTGGGAATGCTTTTATGGCTATATCCTTCTTTAGGTGGAATCGAGTTTTCCATCACTCACTATCTGGAATTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TRAM_LAG1_CLN8

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

6.39

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAM_LAG1_CLN8	PF03798	73 - 152	1.2e-06	TLC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31300 AT1G31300 AT1G31300 AT4G19645 AT4G19645 AT4G19645 AT4G19645 AT4G19645
fragaria_vesca	FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_3g11930 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810 FvH4_6g38810
malus_domestica	MD05G1256500.v1.1 MD09G1146700.v1.1 MD10G1237000.v1.1
prunus_persica	Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.3G178700_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1 Prupe.4G107300_v2.0.a1
pyrus_communis	pycom05g23580 pycom09g06700 pycom10g19820
rosa_chinensis	RchiOBHm_Chr2g0152411 RchiOBHm_Chr5g0019511
rosa_laevigata	RLG00000020631 RLG00000032451
rosa_multiflora	Rmu_sc0002759.1_g000048 Rmu_sc0005885.1_g000004
rosa_roxburghii	Rroxscaffold_1G00058550 Rroxscaffold_2G00095750
rosa_rugosa	Rorug02G0432800 Rorug02G0432800 Rorug02G0432800 Rorug05G0051200.1 Rorug05G0051300 Rorug05G0051400 Rorug05G0051500
rosa_samantha	Rh2AG494200 Rh2BG506500 Rh2CG480500 Rh2DG517600 Rh5AG142200 Rh5BG140600 Rh5CG152700 Rh5DG141300
rosa_wichuraiana	Rw2G040660 Rw5G012580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	11
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	83, 402
AfaI	GTAC	3 cut(s)	169, 278, 383
AfiI	CCNNNNNNNGG	1 cut(s)	428
AluBI	AGCT	2 cut(s)	266, 342
AluI	AGCT	2 cut(s)	266, 342
Alw26I	GTCTC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	83, 402
AoxI	GGCC	2 cut(s)	51, 322
AseI	ATTAAT	1 cut(s)	161
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	336
AsuII	TTCGAA	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	291
BaeI	ACNNNNGTAYC	2 cut(s)	373, 406
BccI	CCATC	1 cut(s)	455
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	292
BmtI	GCTAGC	1 cut(s)	83
BpmI	CTGGAG	1 cut(s)	223
Bpu14I	TTCGAA	1 cut(s)	337
Bsa29I	ATCGAT	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	48, 78
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	240
BseCI	ATCGAT	1 cut(s)	87
BseDI	CCNNGG	1 cut(s)	319
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	387
BseNI	ACTGG	1 cut(s)	240
Bsh1285I	CGRYCG	2 cut(s)	33, 87
BshFI	GGCC	2 cut(s)	53, 324
BshVI	ATCGAT	1 cut(s)	87
BsiEI	CGRYCG	2 cut(s)	33, 87
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	408
BsnI	GGCC	2 cut(s)	53, 324
Bso31I	GGTCTC	1 cut(s)	376
Bsp119I	TTCGAA	1 cut(s)	337
Bsp143I	GATC	6 cut(s)	30, 84, 88, 148, 295, 394
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	2 cut(s)	53, 324
BspCNI	CTCAG	1 cut(s)	386
BspDI	ATCGAT	1 cut(s)	87
BspLI	GGNNCC	1 cut(s)	292
BspOI	GCTAGC	1 cut(s)	83
BspPI	GGATC	2 cut(s)	83, 402
BspT104I	TTCGAA	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	376
BsrI	ACTGG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	6 cut(s)	30, 84, 88, 148, 295, 394
BssT1I	CCWWGG	1 cut(s)	319
Bst4CI	ACNGT	3 cut(s)	22, 227, 351
BstBI	TTCGAA	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	373
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstKTI	GATC	6 cut(s)	33, 87, 91, 151, 298, 397
BstMAI	GTCTC	1 cut(s)	376
BstMBI	GATC	6 cut(s)	30, 84, 88, 148, 295, 394
BstMCI	CGRYCG	2 cut(s)	33, 87
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	394
BstYI	RGATCY	1 cut(s)	394
Bsu15I	ATCGAT	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	53, 324
BsuTUI	ATCGAT	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	291
ClaI	ATCGAT	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	168, 277, 382
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	6 cut(s)	53, 185, 266, 324, 342, 415
CviKI_1	RGCY	6 cut(s)	53, 185, 266, 324, 342, 415
CviQI	GTAC	3 cut(s)	168, 277, 382
DdeI	CTNAG	1 cut(s)	373
DpnI	GATC	6 cut(s)	32, 86, 90, 150, 297, 396
DpnII	GATC	6 cut(s)	30, 84, 88, 148, 295, 394
Eco130I	CCWWGG	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	291
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	1 cut(s)	251
FatI	CATG	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	223
HaeIII	GGCC	2 cut(s)	53, 324
HapII	CCGG	1 cut(s)	54
Hin1II	CATG	1 cut(s)	251
HinfI	GANTC	2 cut(s)	35, 435
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	1 cut(s)	336
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	2 cut(s)	295, 307
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	2 cut(s)	103, 432
HpyCH4III	ACNGT	3 cut(s)	22, 227, 351
HpyCH4V	TGCA	2 cut(s)	135, 469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	1 cut(s)	373
Hsp92II	CATG	1 cut(s)	251
Kzo9I	GATC	6 cut(s)	30, 84, 88, 148, 295, 394
LpnPI	CCDG	5 cut(s)	35, 67, 253, 383, 446
MaeI	CTAG	1 cut(s)	80
MalI	GATC	6 cut(s)	32, 86, 90, 150, 297, 396
MboI	GATC	6 cut(s)	30, 84, 88, 148, 295, 394
MflI	RGATCY	1 cut(s)	394
MluCI	AATT	5 cut(s)	126, 158, 162, 213, 464
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	1 cut(s)	113
MseI	TTAA	3 cut(s)	66, 161, 180
MspI	CCGG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	412
NdeII	GATC	6 cut(s)	30, 84, 88, 148, 295, 394
NheI	GCTAGC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	292
NspV	TTCGAA	1 cut(s)	337
PctI	GAATGC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	35, 435
Ple19I	CGATCG	2 cut(s)	33, 87
PshBI	ATTAAT	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	291
PsuI	RGATCY	1 cut(s)	394
PvuI	CGATCG	2 cut(s)	33, 87
RsaI	GTAC	3 cut(s)	169, 278, 383
RsaNI	GTAC	3 cut(s)	168, 277, 382
SaqAI	TTAA	3 cut(s)	66, 161, 180
Sau3AI	GATC	6 cut(s)	30, 84, 88, 148, 295, 394
Sau96I	GGNCC	1 cut(s)	291
SetI	ASST	5 cut(s)	173, 268, 321, 344, 433
SfuI	TTCGAA	1 cut(s)	337
SinI	GGWCC	1 cut(s)	291
Sse9I	AATT	5 cut(s)	126, 158, 162, 213, 464
SsiI	CCGC	1 cut(s)	392
SspMI	CTAG	1 cut(s)	80
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	3 cut(s)	22, 227, 351
TaqI	TCGA	4 cut(s)	33, 87, 337, 438
TasI	AATT	5 cut(s)	126, 158, 162, 213, 464
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	2 cut(s)	35, 435
Tru1I	TTAA	3 cut(s)	66, 161, 180
Tru9I	TTAA	3 cut(s)	66, 161, 180
TscAI	CASTG	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	85, 236
TspRI	CASTG	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	161
XagI	CCTNNNNNAGG	1 cut(s)	426
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	11
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.