pycom05g23580

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25427878 .. 25429516
1639 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23580.5

Sequence Viewer

Length: 534 bp
ATGGAAATGTCTACAAAGACAGTTATGACGATCAAATCTTACCAAAATCAGGCCGGAGTTCTTGTTAAAAACTACTTACTAGCGGATCCCTTCATACCATATACTTCTATTATTGGAGGCATAATTTTGTGCAAAATGGTATATGATCTTACCCATTTAATTAGTACCTTTTACATTAAGGCTTATGGTAGTCTTACAAAAATCCAACGAATTGAGTGGAACAGTCGTGGTATCTCCAGTATTCATGCCATTTTTATAACAGCTCTGTCCTTGTACTTTGTGTTCTGGTCCGATCTCTTTTCTGATCAACAGCACCTTGGCCTTATTACATTTCGAAGCTCACCGTTGTCTGTTTTTGGATTAGGGGTCTCTGTTGGGTACTTCTGTTCGGATCTGGGAATGCTATTATGGCTATATCCCTGTTTAGGGGGAATGGAGTATGTTTTCCATCACTCACTTGCTGGAATTGCAGTAGCATACTCCATGTTTTCTGGGGAAGGGCAACTTTATACATACATGATCGCTCATCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

178

Amino Acids

19.89

Weight (kDa)

7.0

Isoelectric Point (pI)

32.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 257
AccI GTMKAC 1 cut(s) 11
AciI CCGC 1 cut(s) 83
AclWI GGATC 3 cut(s) 80, 93, 399
AfaI GTAC 3 cut(s) 166, 275, 380
AfiI CCNNNNNNNGG 3 cut(s) 49, 425, 426
AluBI AGCT 2 cut(s) 263, 339
AluI AGCT 2 cut(s) 263, 339
Alw26I GTCTC 1 cut(s) 373
AlwI GGATC 3 cut(s) 80, 93, 399
AoxI GGCC 2 cut(s) 51, 319
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 333
AsuII TTCGAA 1 cut(s) 334
AvaII GGWCC 1 cut(s) 288
BaeI ACNNNNGTAYC 2 cut(s) 370, 403
BamHI GGATCC 1 cut(s) 85
BccI CCATC 1 cut(s) 456
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 1 cut(s) 373
BfaI CTAG 1 cut(s) 80
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 220
Bpu14I TTCGAA 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 425, 426
Bse1I ACTGG 1 cut(s) 237
BseDI CCNNGG 1 cut(s) 316
BseLI CCNNNNNNNGG 3 cut(s) 49, 425, 426
BseNI ACTGG 1 cut(s) 237
BshFI GGCC 2 cut(s) 53, 321
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 3 cut(s) 49, 425, 426
BsmAI GTCTC 1 cut(s) 373
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 2 cut(s) 53, 321
Bso31I GGTCTC 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 334
Bsp143I GATC 7 cut(s) 30, 85, 145, 292, 304, 391, 519
BspACI CCGC 1 cut(s) 83
BspANI GGCC 2 cut(s) 53, 321
BspLI GGNNCC 1 cut(s) 87
BspPI GGATC 3 cut(s) 80, 93, 399
BspT104I TTCGAA 1 cut(s) 334
BspTNI GGTCTC 1 cut(s) 373
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 7 cut(s) 30, 85, 145, 292, 304, 391, 519
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 3 cut(s) 22, 224, 345
BstBI TTCGAA 1 cut(s) 334
BstKTI GATC 7 cut(s) 33, 88, 148, 295, 307, 394, 522
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 7 cut(s) 30, 85, 145, 292, 304, 391, 519
BstMWI GCNNNNNNNGC 2 cut(s) 409, 467
BstX2I RGATCY 2 cut(s) 85, 391
BstYI RGATCY 2 cut(s) 85, 391
BsuRI GGCC 2 cut(s) 53, 321
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 3 cut(s) 165, 274, 379
CviAII CATG 3 cut(s) 245, 484, 517
CviJI RGCY 6 cut(s) 53, 182, 263, 321, 339, 412
CviKI_1 RGCY 6 cut(s) 53, 182, 263, 321, 339, 412
CviQI GTAC 3 cut(s) 165, 274, 379
DpnI GATC 7 cut(s) 32, 87, 147, 294, 306, 393, 521
DpnII GATC 7 cut(s) 30, 85, 145, 292, 304, 391, 519
Eco130I CCWWGG 1 cut(s) 316
Eco31I GGTCTC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 3 cut(s) 248, 487, 520
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 3 cut(s) 244, 483, 516
FbaI TGATCA 1 cut(s) 304
FblI GTMKAC 1 cut(s) 11
FspBI CTAG 1 cut(s) 80
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 2 cut(s) 53, 321
HapII CCGG 1 cut(s) 54
Hin1II CATG 3 cut(s) 248, 487, 520
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 333
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 4 cut(s) 292, 304, 391, 533
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 100, 491
HpyCH4III ACNGT 3 cut(s) 22, 224, 345
HpyCH4V TGCA 2 cut(s) 132, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 409, 467
Hsp92II CATG 3 cut(s) 248, 487, 520
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 7 cut(s) 30, 85, 145, 292, 304, 391, 519
LpnPI CCDG 8 cut(s) 35, 67, 250, 271, 380, 433, 447, 477
MaeI CTAG 1 cut(s) 80
MalI GATC 7 cut(s) 32, 87, 147, 294, 306, 393, 521
MboI GATC 7 cut(s) 30, 85, 145, 292, 304, 391, 519
MflI RGATCY 2 cut(s) 85, 391
MluCI AATT 4 cut(s) 123, 159, 210, 465
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 1 cut(s) 110
MseI TTAA 3 cut(s) 66, 158, 177
MspI CCGG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 405
MwoI GCNNNNNNNGC 2 cut(s) 409, 467
NdeII GATC 7 cut(s) 30, 85, 145, 292, 304, 391, 519
NlaIII CATG 3 cut(s) 248, 487, 520
NlaIV GGNNCC 1 cut(s) 87
NspV TTCGAA 1 cut(s) 334
PctI GAATGC 1 cut(s) 405
PsiI TTATAA 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 288
PsrI GAACNNNNNNTAC 2 cut(s) 266, 298
PsuI RGATCY 2 cut(s) 85, 391
RsaI GTAC 3 cut(s) 166, 275, 380
RsaNI GTAC 3 cut(s) 165, 274, 379
SaqAI TTAA 3 cut(s) 66, 158, 177
Sau3AI GATC 7 cut(s) 30, 85, 145, 292, 304, 391, 519
Sau96I GGNCC 1 cut(s) 288
SetI ASST 4 cut(s) 170, 265, 318, 341
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 1 cut(s) 288
Sse9I AATT 4 cut(s) 123, 159, 210, 465
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 80
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 3 cut(s) 22, 224, 345
TaqI TCGA 1 cut(s) 334
TasI AATT 4 cut(s) 123, 159, 210, 465
TatI WGTACW 1 cut(s) 273
Tru1I TTAA 3 cut(s) 66, 158, 177
Tru9I TTAA 3 cut(s) 66, 158, 177
TspDTI ATGAA 2 cut(s) 82, 233
VpaK11BI GGWCC 1 cut(s) 288
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.