Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

11874508 .. 11877549

Gene Structure 3042 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G32790.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCGGTTGTTGAGACTGGAGCAGCAGCTACTGCTGCTGATGCAGGAGGAGTCGTGATCCAGCCGCCGCCGTCTTCACCACCATCTTCAATGACTAGTCAAGATTCCGGCGTTTCTTCCGATGATCAGAACCATCACTCTAGGATCGATCAAGTTCTCCGGCACGATCAAGGTCTTTACAGCAAGATCGGGTCACACGTGGCGAGATCCGACGGCGTTGACGGTGGTGAGAGCTTTAAGCGTGATATGAGAGAGCTTCAGGAGCTTTTCTCTAAGCTTAATCCTATGGCTGAAGAGTTTGTTCCTCCTTCTCTGAATAAACAAGGAGGTAACGGTGTTAACGGTGGTTTCTTCACCTCTGCTGGTTCCTTCTTCCGCAACAATGGCTTTGCTGGTACCGGAAATGGCGGATACGGTAACGAAAACGGTGGTTTCCGACGGAAGAAGAGTTTTGGTCAAGGGAAACGAAGGATGAATGCTCGAACAAGCATGGCTCAGCGAGAAGATGTTATCCGTAGAACCGTCTACGTCTCTGATCTCGATCAACAGGTCACTGAAGAGCAGCTTGCTGGTTTGTTTGTGAGCTGTGGACAGGTTGTTGACTGTCGCATATGCGGTGACCCAAACTCGGTCCTTCGGTTTGCATTCATAGAGTTCACTGATGAAGAGGGTGCGATGACTGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATAGACAAGAAGGTGACTCAATCAGACGTGAAGATCTTTTTTGAGTCCTTCTGCGGAGAGGTTTATCGCCTGAGGCTGCTTGGAGATTATCAACACTCGACTCGTATTGCTTTTGTAGAGTTCGTAATGGCGGAAAGCGCAATAGCTGCTCTCAACTGCAGTGGAGTTGTTCTTGGTTCTTTACCTATAAGGGTGAGTCCTTCAAAGACGCCTGTTCGTCCGAGATCACCGAGGCATCCAATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

358

Amino Acids

38.95

Weight (kDa)

7.04

Isoelectric Point (pI)

49.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	175 - 237	1.1e-11	RNA recognition motif
RRM_1	PF00076	272 - 339	1.5e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	8 cut(s)	5, 65, 68, 376, 408, 615, 882, 959
AclWI	GGATC	3 cut(s)	52, 152, 201
AcsI	RAATTY	1 cut(s)	688
AcuI	CTGAAG	4 cut(s)	242, 312, 576, 804
AcvI	CACGTG	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	1037
AfaI	GTAC	2 cut(s)	397, 823
AfiI	CCNNNNNNNGG	1 cut(s)	628
AflIII	ACRYGT	1 cut(s)	196
AgeI	ACCGGT	1 cut(s)	754
AgsI	TTSAA	2 cut(s)	90, 1032
AhlI	ACTAGT	1 cut(s)	95
AjiI	CACGTC	1 cut(s)	856
AluBI	AGCT	9 cut(s)	29, 234, 256, 265, 277, 565, 585, 746, 974
AluI	AGCT	9 cut(s)	29, 234, 256, 265, 277, 565, 585, 746, 974
Alw26I	GTCTC	2 cut(s)	8, 535
AlwI	GGATC	3 cut(s)	52, 152, 201
AlwNI	CAGNNNCTG	1 cut(s)	32
ApeKI	GCWGC	6 cut(s)	23, 26, 35, 562, 904, 974
ApoI	RAATTY	1 cut(s)	688
AsiGI	ACCGGT	1 cut(s)	754
Asp718I	GGTACC	1 cut(s)	395
AspA2I	CCTAGG	1 cut(s)	776
AspLEI	GCGC	1 cut(s)	968
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	7 cut(s)	69, 239, 346, 629, 853, 1033, 1047
AvaII	GGWCC	1 cut(s)	631
AvrII	CCTAGG	1 cut(s)	776
AxyI	CCTNAGG	1 cut(s)	899
BanI	GGYRCC	1 cut(s)	395
BbrPI	CACGTG	1 cut(s)	199
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	6 cut(s)	22, 35, 38, 574, 891, 961
BccI	CCATC	3 cut(s)	91, 141, 742
BceAI	ACGGC	2 cut(s)	55, 229
BcgI	CGANNNNNNTGC	2 cut(s)	754, 788
BciVI	GTATCC	1 cut(s)	404
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	8, 535
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	3 cut(s)	96, 141, 777
BfmI	CTRYAG	2 cut(s)	747, 985
BfuI	GTATCC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	861
BisI	GCNGC	8 cut(s)	24, 27, 36, 65, 68, 563, 905, 975
BlnI	CCTAGG	1 cut(s)	776
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	8 cut(s)	25, 28, 37, 66, 69, 564, 906, 976
Bme18I	GGWCC	1 cut(s)	631
BmgBI	CACGTC	1 cut(s)	856
BmgT120I	GGNCC	1 cut(s)	631
BmiI	GGNNCC	2 cut(s)	367, 397
BmsI	GCATC	2 cut(s)	31, 1072
BpiI	GAAGAC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpmI	CTGGAG	1 cut(s)	39
Bpu1102I	GCTNAGC	1 cut(s)	495
Bsa29I	ATCGAT	1 cut(s)	147
BsaAI	YACGTR	1 cut(s)	199
BsaBI	GATNNNNATC	1 cut(s)	540
BsaHI	GRCGYC	1 cut(s)	1037
BsaJI	CCNNGG	2 cut(s)	776, 1058
BsaWI	WCCGGW	2 cut(s)	398, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	39, 69
Bsc4I	CCNNNNNNNGG	1 cut(s)	628
Bse118I	RCCGGY	1 cut(s)	754
Bse1I	ACTGG	1 cut(s)	22
Bse21I	CCTNAGG	1 cut(s)	899
Bse8I	GATNNNNATC	1 cut(s)	540
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	776, 1058
BseGI	GGATG	3 cut(s)	477, 734, 1063
BseJI	GATNNNNATC	1 cut(s)	540
BseLI	CCNNNNNNNGG	1 cut(s)	628
BseMII	CTCAG	2 cut(s)	509, 890
BseNI	ACTGG	1 cut(s)	22
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	6 cut(s)	22, 35, 38, 574, 891, 961
BshNI	GGYRCC	1 cut(s)	395
BshTI	ACCGGT	1 cut(s)	754
BshVI	ATCGAT	1 cut(s)	147
BsiSI	CCGG	4 cut(s)	108, 160, 399, 755
BslFI	GGGAC	1 cut(s)	712
BslI	CCNNNNNNNGG	1 cut(s)	628
BsmAI	GTCTC	2 cut(s)	8, 535
BsmBI	CGTCTC	1 cut(s)	535
BsmFI	GGGAC	1 cut(s)	712
BsmI	GAATGC	2 cut(s)	481, 644
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	8 cut(s)	5, 65, 68, 376, 408, 615, 882, 959
BspCNI	CTCAG	2 cut(s)	508, 891
BspDI	ATCGAT	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	367, 397
BspMAI	CTGCAG	1 cut(s)	989
BspPI	GGATC	3 cut(s)	52, 152, 201
BspQI	GCTCTTC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	754
BsrI	ACTGG	1 cut(s)	22
BssAI	RCCGGY	1 cut(s)	754
BssECI	CCNNGG	2 cut(s)	776, 1058
BssNI	GRCGYC	1 cut(s)	1037
BssT1I	CCWWGG	1 cut(s)	776
Bst4CI	ACNGT	8 cut(s)	224, 335, 344, 416, 428, 523, 605, 821
Bst6I	CTCTTC	4 cut(s)	288, 440, 552, 660
BstACI	GRCGYC	1 cut(s)	1037
BstAPI	GCANNNNNTGC	3 cut(s)	32, 974, 1069
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	3 cut(s)	273, 495, 899
BstEII	GGTNACC	1 cut(s)	617
BstF5I	GGATG	3 cut(s)	477, 734, 1063
BstHHI	GCGC	1 cut(s)	968
BstMAI	GTCTC	2 cut(s)	8, 535
BstMWI	GCNNNNNNNGC	9 cut(s)	32, 35, 41, 262, 384, 680, 965, 974, 1069
BstPI	GGTNACC	1 cut(s)	617
BstSFI	CTRYAG	2 cut(s)	747, 985
BstV1I	GCAGC	6 cut(s)	22, 35, 38, 574, 891, 961
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	206, 861
BstYI	RGATCY	2 cut(s)	206, 861
Bsu15I	ATCGAT	1 cut(s)	147
Bsu36I	CCTNAGG	1 cut(s)	899
BsuI	GTATCC	1 cut(s)	404
BsuTUI	ATCGAT	1 cut(s)	147
BtgZI	GCGATG	1 cut(s)	689
BtrI	CACGTC	1 cut(s)	856
BtsCI	GGATG	3 cut(s)	477, 734, 1063
BtsI	GCAGTG	1 cut(s)	994
BtsIMutI	CAGTG	3 cut(s)	552, 657, 994
Cac8I	GCNNGC	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	968
Cfr10I	RCCGGY	1 cut(s)	754
Cfr13I	GGNCC	1 cut(s)	631
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	1 cut(s)	1045
Csp6I	GTAC	2 cut(s)	396, 822
CspAI	ACCGGT	1 cut(s)	754
CspCI	CAANNNNNGTGG	2 cut(s)	970, 1005
CviAII	CATG	1 cut(s)	490
CviQI	GTAC	2 cut(s)	396, 822
DdeI	CTNAG	3 cut(s)	273, 495, 899
Eam1104I	CTCTTC	4 cut(s)	288, 440, 552, 660
EarI	CTCTTC	4 cut(s)	288, 440, 552, 660
EciI	GGCGGA	2 cut(s)	423, 974
Eco130I	CCWWGG	1 cut(s)	776
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	4 cut(s)	242, 312, 576, 804
Eco72I	CACGTG	1 cut(s)	199
Eco81I	CCTNAGG	1 cut(s)	899
Eco91I	GGTNACC	1 cut(s)	617
EcoO65I	GGTNACC	1 cut(s)	617
EcoT14I	CCWWGG	1 cut(s)	776
EcoT22I	ATGCAT	1 cut(s)	1074
ErhI	CCWWGG	1 cut(s)	776
Esp3I	CGTCTC	1 cut(s)	535
FaeI	CATG	1 cut(s)	493
FalI	AAGNNNNNCTT	2 cut(s)	549, 581
FaqI	GGGAC	1 cut(s)	712
FatI	CATG	1 cut(s)	489
FauNDI	CATATG	1 cut(s)	611
FbaI	TGATCA	1 cut(s)	124
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	8 cut(s)	24, 27, 36, 65, 68, 563, 905, 975
FokI	GGATG	3 cut(s)	484, 721, 1050
Fsp4HI	GCNGC	8 cut(s)	24, 27, 36, 65, 68, 563, 905, 975
FspBI	CTAG	3 cut(s)	96, 141, 777
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	8 cut(s)	24, 27, 36, 65, 68, 563, 905, 975
GsuI	CTGGAG	1 cut(s)	39
HapII	CCGG	4 cut(s)	108, 160, 399, 755
HgaI	GACGC	1 cut(s)	1045
HhaI	GCGC	1 cut(s)	968
Hin1I	GRCGYC	1 cut(s)	1037
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HincII	GTYRAC	4 cut(s)	220, 340, 601, 760
HindII	GTYRAC	4 cut(s)	220, 340, 601, 760
HindIII	AAGCTT	1 cut(s)	275
HinfI	GANTC	7 cut(s)	51, 104, 711, 844, 872, 928, 1024
HpaI	GTTAAC	2 cut(s)	340, 760
HpaII	CCGG	4 cut(s)	108, 160, 399, 755
HphI	GGTGA	7 cut(s)	69, 239, 346, 629, 853, 1033, 1047
Hpy166II	GTNNAC	7 cut(s)	220, 340, 526, 590, 601, 657, 760
Hpy188I	TCNGA	8 cut(s)	121, 129, 211, 315, 437, 535, 853, 1050
Hpy188III	TCNNGA	4 cut(s)	55, 101, 260, 539
Hpy8I	GTNNAC	7 cut(s)	220, 340, 526, 590, 601, 657, 760
Hpy99I	CGWCG	2 cut(s)	215, 441
HpyAV	CCTTC	7 cut(s)	318, 379, 462, 644, 832, 886, 1038
HpyCH4III	ACNGT	8 cut(s)	224, 335, 344, 416, 428, 523, 605, 821
HpyCH4IV	ACGT	3 cut(s)	198, 528, 855
HpyCH4V	TGCA	5 cut(s)	44, 644, 806, 987, 1072
HpyF10VI	GCNNNNNNNGC	9 cut(s)	32, 35, 41, 262, 384, 680, 965, 974, 1069
HpyF3I	CTNAG	3 cut(s)	273, 495, 899
HpySE526I	ACGT	3 cut(s)	198, 528, 855
Hsp92I	GRCGYC	1 cut(s)	1037
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	1 cut(s)	966
KpnI	GGTACC	1 cut(s)	399
Ksp22I	TGATCA	1 cut(s)	124
KspAI	GTTAAC	2 cut(s)	340, 760
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	20, 262
Lsp1109I	GCAGC	6 cut(s)	22, 35, 38, 574, 891, 961
LweI	GCATC	2 cut(s)	31, 1072
MaeI	CTAG	3 cut(s)	96, 141, 777
MaeII	ACGT	3 cut(s)	198, 528, 855
MaeIII	GTNAC	6 cut(s)	192, 329, 416, 550, 617, 841
MflI	RGATCY	2 cut(s)	206, 861
MluCI	AATT	1 cut(s)	688
MlyI	GAGTC	5 cut(s)	60, 838, 881, 922, 1033
MmeI	TCCRAC	2 cut(s)	234, 460
MnlI	CCTC	8 cut(s)	41, 315, 320, 367, 661, 880, 894, 1053
Mph1103I	ATGCAT	1 cut(s)	1074
MseI	TTAA	4 cut(s)	237, 279, 339, 759
MspI	CCGG	4 cut(s)	108, 160, 399, 755
Mva1269I	GAATGC	2 cut(s)	481, 644
MwoI	GCNNNNNNNGC	9 cut(s)	32, 35, 41, 262, 384, 680, 965, 974, 1069
NdeI	CATATG	1 cut(s)	611
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	2 cut(s)	367, 397
NmuCI	GTSAC	4 cut(s)	192, 550, 617, 841
NsiI	ATGCAT	1 cut(s)	1074
PciSI	GCTCTTC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	2 cut(s)	481, 644
PfeI	GAWTC	2 cut(s)	104, 711
PinAI	ACCGGT	1 cut(s)	754
PkrI	GCNGC	8 cut(s)	25, 28, 37, 66, 69, 564, 906, 976
PleI	GAGTC	5 cut(s)	59, 838, 880, 922, 1032
PmaCI	CACGTG	1 cut(s)	199
PmlI	CACGTG	1 cut(s)	199
PpsI	GAGTC	5 cut(s)	59, 838, 880, 922, 1032
Ppu21I	YACGTR	1 cut(s)	199
PspCI	CACGTG	1 cut(s)	199
PspEI	GGTNACC	1 cut(s)	617
PspN4I	GGNNCC	2 cut(s)	367, 397
PspPI	GGNCC	1 cut(s)	631
PstI	CTGCAG	1 cut(s)	989
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	2 cut(s)	206, 861
RsaI	GTAC	2 cut(s)	397, 823
RsaNI	GTAC	2 cut(s)	396, 822
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	4 cut(s)	237, 279, 339, 759
SatI	GCNGC	8 cut(s)	24, 27, 36, 65, 68, 563, 905, 975
Sau96I	GGNCC	1 cut(s)	631
SchI	GAGTC	5 cut(s)	60, 838, 881, 922, 1033
SfaNI	GCATC	2 cut(s)	31, 1072
SfcI	CTRYAG	2 cut(s)	747, 985
SinI	GGWCC	1 cut(s)	631
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	1 cut(s)	688
SsiI	CCGC	8 cut(s)	5, 65, 68, 376, 408, 615, 882, 959
SspMI	CTAG	3 cut(s)	96, 141, 777
StyI	CCWWGG	1 cut(s)	776
TaaI	ACNGT	8 cut(s)	224, 335, 344, 416, 428, 523, 605, 821
TaiI	ACGT	3 cut(s)	201, 531, 858
TaqI	TCGA	4 cut(s)	147, 481, 540, 926
TaqII	GACCGA	1 cut(s)	619
TasI	AATT	1 cut(s)	688
TatI	WGTACW	1 cut(s)	821
TauI	GCSGC	2 cut(s)	67, 70
TfiI	GAWTC	2 cut(s)	104, 711
Tru1I	TTAA	4 cut(s)	237, 279, 339, 759
Tru9I	TTAA	4 cut(s)	237, 279, 339, 759
TscAI	CASTG	3 cut(s)	559, 664, 994
TseFI	GTSAC	4 cut(s)	192, 550, 617, 841
TseI	GCWGC	6 cut(s)	23, 26, 35, 562, 904, 974
Tsp45I	GTSAC	4 cut(s)	192, 550, 617, 841
TspDTI	ATGAA	3 cut(s)	488, 637, 678
TspGWI	ACGGA	2 cut(s)	454, 503
TspRI	CASTG	3 cut(s)	559, 664, 994
VpaK11BI	GGWCC	1 cut(s)	631
XapI	RAATTY	1 cut(s)	688
XmaJI	CCTAGG	1 cut(s)	776
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	3 cut(s)	96, 141, 777
Zsp2I	ATGCAT	1 cut(s)	1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.