Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

12711193 .. 12715427

Gene Structure 4235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G132400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

ATGGCAGTGGTTGAGAACGCAGGGGTGGAGCTGGGGAAGAGCGTTGGGTCGGCTTCGGCGAATCGGAACCCTGAGGCTGCATCGCAGGATGGCGGAGCTGCTGCTGCGGCTGCTGCATCCAACGATCAGGATCAGTCCAAGCACAACGCCGCCCCTTTACGACACCGTCTCGATCAGAGCCTGTATGTGATGGTTACGCCGCCCCACAACGGCAACGGCAATATCAACGGCATCAGCAGCAACAACAACGGCAGCAACCAGAAGGTGGGTCAGCTGGGGACCTTCGATCACGTGGCGAAGATCGCGGGGCAGCAGCTGAATCATCATCATCAGCATCAGCAGCAGCGATCCAACGGCGGGGATTTTCAGATGAGTAATGGGGATCATCACGACGTGGACAGGGACATGAGGGAGCTGAGGGAGCTGTTCTCTAAGCTCAACCCAATGGCTGAGGAGTTTGTGCCTCCTTCACTTGCTAACGGTCATGGACTTAATGCTGGCTTTGTTAACATGGCACTAATGATGCAAAATGGCAACAGAAATGGACAAGTTAATGGCTTTGGTGCTGGTCGACGGAGAAACAATCAAGGGAAACGGAGAATCAACAGCAGGACAAGTCTAGCGCAGCGAGAAGATAGAATTCGAAGGACTGTGTATGTGTCTGACATTGATCAACAGGTCACTGAGGAACAGCTTGCAGCTCTCTTTGTTACTTGTGGGCAGGTTGTTGACTGCCGAATTTGTGGTGACCCTAATTCTGTTCTCCGTTTTGCCTTTATAGAGTTCACTGATGAAGATGGTGCACGAGCCGCTTTGAGTCTGGCTGGGACAATGCTTGGATTCTACCCTGTTAGGGTGCTGCCCTCTAAGACAGCTATTGCACCTGTTAACCCTACATTCTTGCCTCGCACTGAAGATGAACGTGAGATGTGTGCACGAACTATCTATTGTACAAATATTGACAAAAAGGTTGCCCAAGCTGATGTCAAACTCTTTTTTGAATCTGTCTGTGGAGAGGTTTATCGTCTGAGGCTACTAGGGGACTATCACCACTCTACTCGCATTGCCTTTGTTGAGTTTGTGATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGTGTGGTTTTGGGATCATTGCCAATCAGGGTAAGTCCATCAAAGACACCCGTTCGTCCACGCTCTCCTCGCCTTCCCATACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

402

Amino Acids

43.75

Weight (kDa)

8.47

Isoelectric Point (pI)

41.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	712
AccB7I	CCANNNNNTGG	1 cut(s)	265
AccI	GTMKAC	1 cut(s)	571
AccII	CGCG	1 cut(s)	305
AciI	CCGC	7 cut(s)	93, 107, 150, 200, 305, 357, 810
AclWI	GGATC	4 cut(s)	138, 342, 390, 1141
AcsI	RAATTY	2 cut(s)	639, 738
AcuI	CTGAAG	1 cut(s)	933
AcvI	CACGTG	1 cut(s)	292
AdeI	CACNNNGTG	1 cut(s)	394
AfaI	GTAC	1 cut(s)	952
AfiI	CCNNNNNNNGG	4 cut(s)	209, 265, 357, 853
AgsI	TTSAA	1 cut(s)	1001
AjiI	CACGTC	1 cut(s)	394
Alw21I	GWGCWC	2 cut(s)	805, 937
Alw26I	GTCTC	1 cut(s)	173
Alw44I	GTGCAC	2 cut(s)	801, 933
AlwI	GGATC	4 cut(s)	138, 342, 390, 1141
AlwNI	CAGNNNCTG	2 cut(s)	181, 316
ApaLI	GTGCAC	2 cut(s)	801, 933
ApoI	RAATTY	2 cut(s)	639, 738
AspLEI	GCGC	1 cut(s)	625
AspS9I	GGNCC	1 cut(s)	279
AsuHPI	GGTGA	2 cut(s)	758, 1040
AsuII	TTCGAA	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	72
BaeGI	GKGCMC	2 cut(s)	805, 937
BauI	CACGAG	1 cut(s)	804
BbrPI	CACGTG	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	805, 937
BbvCI	CCTCAGC	2 cut(s)	416, 450
BccI	CCATC	5 cut(s)	83, 184, 791, 1078, 1165
BceAI	ACGGC	5 cut(s)	226, 232, 244, 265, 370
BclI	TGATCA	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	173
BfaI	CTAG	2 cut(s)	620, 1037
BfmI	CTRYAG	1 cut(s)	1114
BfuAI	ACCTGC	1 cut(s)	712
Bme18I	GGWCC	1 cut(s)	279
BmgBI	CACGTC	1 cut(s)	394
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	68, 280
BmsI	GCATC	5 cut(s)	89, 125, 240, 343, 513
BplI	GAGNNNNNCTC	2 cut(s)	413, 445
Bpu10I	CCTNAGC	2 cut(s)	416, 450
Bpu14I	TTCGAA	1 cut(s)	643
BsaAI	YACGTR	1 cut(s)	292
BsaBI	GATNNNNATC	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 265, 357, 853
Bse21I	CCTNAGG	1 cut(s)	72
Bse3DI	GCAATG	2 cut(s)	1062, 1136
Bse8I	GATNNNNATC	1 cut(s)	129
BseGI	GGATG	2 cut(s)	94, 116
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	4 cut(s)	209, 265, 357, 853
BseMI	GCAATG	2 cut(s)	1062, 1136
BseMII	CTCAG	5 cut(s)	63, 407, 441, 675, 1019
BseRI	GAGGAG	2 cut(s)	467, 1176
BseSI	GKGCMC	2 cut(s)	805, 937
BseYI	CCCAGC	3 cut(s)	31, 274, 824
Bsh1236I	CGCG	1 cut(s)	305
BsiHKAI	GWGCWC	2 cut(s)	805, 937
BslFI	GGGAC	4 cut(s)	292, 416, 841, 1055
BslI	CCNNNNNNNGG	4 cut(s)	209, 265, 357, 853
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmFI	GGGAC	4 cut(s)	292, 416, 841, 1055
Bsp119I	TTCGAA	1 cut(s)	643
Bsp1286I	GDGCHC	2 cut(s)	805, 937
Bsp1407I	TGTACA	1 cut(s)	950
Bsp143I	GATC	9 cut(s)	124, 130, 172, 286, 300, 347, 382, 670, 1133
BspACI	CCGC	7 cut(s)	93, 107, 150, 200, 305, 357, 810
BspCNI	CTCAG	5 cut(s)	64, 408, 442, 676, 1020
BspFNI	CGCG	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	68, 280
BspMI	ACCTGC	1 cut(s)	712
BspPI	GGATC	4 cut(s)	138, 342, 390, 1141
BspQI	GCTCTTC	1 cut(s)	32
BspT104I	TTCGAA	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	1062, 1136
BsrGI	TGTACA	1 cut(s)	950
BssMI	GATC	9 cut(s)	124, 130, 172, 286, 300, 347, 382, 670, 1133
BssSI	CACGAG	1 cut(s)	804
Bst2BI	CACGAG	1 cut(s)	804
Bst4CI	ACNGT	4 cut(s)	167, 482, 652, 1115
Bst6I	CTCTTC	1 cut(s)	32
BstAPI	GCANNNNNTGC	1 cut(s)	1103
BstAUI	TGTACA	1 cut(s)	950
BstBAI	YACGTR	1 cut(s)	292
BstBI	TTCGAA	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	499, 696
BstDEI	CTNAG	7 cut(s)	72, 416, 432, 450, 684, 867, 1028
BstEII	GGTNACC	1 cut(s)	746
BstF5I	GGATG	2 cut(s)	94, 116
BstFNI	CGCG	1 cut(s)	305
BstHHI	GCGC	1 cut(s)	625
BstKTI	GATC	9 cut(s)	127, 133, 175, 289, 303, 350, 385, 673, 1136
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	9 cut(s)	124, 130, 172, 286, 300, 347, 382, 670, 1133
BstPI	GGTNACC	1 cut(s)	746
BstSFI	CTRYAG	1 cut(s)	1114
BstSLI	GKGCMC	2 cut(s)	805, 937
BstUI	CGCG	1 cut(s)	305
Bsu36I	CCTNAGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	394
BtsCI	GGATG	2 cut(s)	94, 116
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 681, 786, 909
BveI	ACCTGC	1 cut(s)	712
Cac8I	GCNNGC	2 cut(s)	499, 696
CaiI	CAGNNNCTG	2 cut(s)	181, 316
CfoI	GCGC	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	951
CspCI	CAANNNNNGTGG	2 cut(s)	1099, 1134
CviAII	CATG	3 cut(s)	406, 485, 511
CviQI	GTAC	1 cut(s)	951
DdeI	CTNAG	7 cut(s)	72, 416, 432, 450, 684, 867, 1028
DpnI	GATC	9 cut(s)	126, 132, 174, 288, 302, 349, 384, 672, 1135
DpnII	GATC	9 cut(s)	124, 130, 172, 286, 300, 347, 382, 670, 1133
DraIII	CACNNNGTG	1 cut(s)	394
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	933
Eco72I	CACGTG	1 cut(s)	292
Eco81I	CCTNAGG	1 cut(s)	72
Eco91I	GGTNACC	1 cut(s)	746
EcoO109I	RGGNCCY	1 cut(s)	279
EcoO65I	GGTNACC	1 cut(s)	746
EcoRI	GAATTC	1 cut(s)	639
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	3 cut(s)	409, 488, 514
FaiI	YATR	7 cut(s)	186, 407, 486, 512, 657, 779, 1199
FaqI	GGGAC	4 cut(s)	292, 416, 841, 1055
FatI	CATG	3 cut(s)	405, 484, 510
FauI	CCCGC	2 cut(s)	298, 350
FbaI	TGATCA	1 cut(s)	670
FblI	GTMKAC	1 cut(s)	571
FokI	GGATG	2 cut(s)	101, 103
FspBI	CTAG	2 cut(s)	620, 1037
GlaI	GCGC	1 cut(s)	624
GsaI	CCCAGC	3 cut(s)	35, 278, 828
HhaI	GCGC	1 cut(s)	625
Hin1II	CATG	3 cut(s)	409, 488, 514
Hin6I	GCGC	1 cut(s)	623
HinP1I	GCGC	1 cut(s)	623
HincII	GTYRAC	4 cut(s)	508, 572, 730, 889
HindII	GTYRAC	4 cut(s)	508, 572, 730, 889
HinfI	GANTC	6 cut(s)	61, 319, 600, 817, 840, 1001
HpaI	GTTAAC	2 cut(s)	508, 889
HphI	GGTGA	2 cut(s)	758, 1040
Hpy166II	GTNNAC	9 cut(s)	397, 508, 572, 730, 786, 803, 889, 935, 1178
Hpy188I	TCNGA	5 cut(s)	66, 177, 369, 664, 1029
Hpy188III	TCNNGA	3 cut(s)	128, 170, 389
Hpy8I	GTNNAC	9 cut(s)	397, 508, 572, 730, 786, 803, 889, 935, 1178
Hpy99I	CGWCG	2 cut(s)	395, 576
HpyAV	CCTTC	5 cut(s)	256, 292, 477, 639, 1202
HpyCH4III	ACNGT	4 cut(s)	167, 482, 652, 1115
HpyCH4IV	ACGT	3 cut(s)	291, 393, 922
HpyCH4V	TGCA	8 cut(s)	80, 116, 526, 698, 803, 881, 935, 1097
HpyF3I	CTNAG	7 cut(s)	72, 416, 432, 450, 684, 867, 1028
HpySE526I	ACGT	3 cut(s)	291, 393, 922
Hsp92II	CATG	3 cut(s)	409, 488, 514
HspAI	GCGC	1 cut(s)	623
Ksp22I	TGATCA	1 cut(s)	670
KspAI	GTTAAC	2 cut(s)	508, 889
Kzo9I	GATC	9 cut(s)	124, 130, 172, 286, 300, 347, 382, 670, 1133
LguI	GCTCTTC	1 cut(s)	32
LmnI	GCTCC	4 cut(s)	28, 95, 412, 421
LweI	GCATC	5 cut(s)	89, 125, 240, 343, 513
MaeI	CTAG	2 cut(s)	620, 1037
MaeII	ACGT	3 cut(s)	291, 393, 922
MaeIII	GTNAC	4 cut(s)	193, 679, 709, 746
MalI	GATC	9 cut(s)	126, 132, 174, 288, 302, 349, 384, 672, 1135
MboI	GATC	9 cut(s)	124, 130, 172, 286, 300, 347, 382, 670, 1133
MboII	GAAGA	5 cut(s)	49, 310, 644, 806, 926
MfeI	CAATTG	1 cut(s)	1098
MhlI	GDGCHC	2 cut(s)	805, 937
MluCI	AATT	4 cut(s)	639, 738, 754, 1098
MlyI	GAGTC	1 cut(s)	826
MmeI	TCCRAC	2 cut(s)	144, 375
MseI	TTAA	4 cut(s)	492, 507, 552, 888
MspA1I	CMGCKG	2 cut(s)	274, 316
MunI	CAATTG	1 cut(s)	1098
MvnI	CGCG	1 cut(s)	305
NdeII	GATC	9 cut(s)	124, 130, 172, 286, 300, 347, 382, 670, 1133
NlaIII	CATG	3 cut(s)	409, 488, 514
NlaIV	GGNNCC	2 cut(s)	68, 280
NmuCI	GTSAC	2 cut(s)	679, 746
NspV	TTCGAA	1 cut(s)	643
PciSI	GCTCTTC	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	5 cut(s)	61, 319, 600, 840, 1001
PflFI	GACNNNGTC	1 cut(s)	165
PflMI	CCANNNNNTGG	1 cut(s)	265
PleI	GAGTC	1 cut(s)	825
PmaCI	CACGTG	1 cut(s)	292
PmlI	CACGTG	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	825
Ppu21I	YACGTR	1 cut(s)	292
PpuMI	RGGWCCY	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	279
PspCI	CACGTG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	746
PspFI	CCCAGC	3 cut(s)	31, 274, 824
PspN4I	GGNNCC	2 cut(s)	68, 280
PspPI	GGNCC	1 cut(s)	279
PspPPI	RGGWCCY	1 cut(s)	279
PstNI	CAGNNNCTG	2 cut(s)	181, 316
PsyI	GACNNNGTC	1 cut(s)	165
PvuII	CAGCTG	2 cut(s)	274, 316
RsaI	GTAC	1 cut(s)	952
RsaNI	GTAC	1 cut(s)	951
SalI	GTCGAC	1 cut(s)	570
SapI	GCTCTTC	1 cut(s)	32
SaqAI	TTAA	4 cut(s)	492, 507, 552, 888
Sau3AI	GATC	9 cut(s)	124, 130, 172, 286, 300, 347, 382, 670, 1133
Sau96I	GGNCC	1 cut(s)	279
SchI	GAGTC	1 cut(s)	826
SduI	GDGCHC	2 cut(s)	805, 937
SfaNI	GCATC	5 cut(s)	89, 125, 240, 343, 513
SfcI	CTRYAG	1 cut(s)	1114
SfuI	TTCGAA	1 cut(s)	643
SinI	GGWCC	1 cut(s)	279
Sse9I	AATT	4 cut(s)	639, 738, 754, 1098
SsiI	CCGC	7 cut(s)	93, 107, 150, 200, 305, 357, 810
SspI	AATATT	1 cut(s)	958
SspMI	CTAG	2 cut(s)	620, 1037
TaaI	ACNGT	4 cut(s)	167, 482, 652, 1115
TaiI	ACGT	3 cut(s)	294, 396, 925
TaqI	TCGA	4 cut(s)	171, 285, 571, 643
TasI	AATT	4 cut(s)	639, 738, 754, 1098
TatI	WGTACW	1 cut(s)	950
TauI	GCSGC	4 cut(s)	110, 152, 202, 812
TfiI	GAWTC	5 cut(s)	61, 319, 600, 840, 1001
Tru1I	TTAA	4 cut(s)	492, 507, 552, 888
Tru9I	TTAA	4 cut(s)	492, 507, 552, 888
TscAI	CASTG	4 cut(s)	12, 688, 793, 916
TseFI	GTSAC	2 cut(s)	679, 746
Tsp45I	GTSAC	2 cut(s)	679, 746
TspDTI	ATGAA	2 cut(s)	807, 933
TspGWI	ACGGA	3 cut(s)	589, 610, 755
TspRI	CASTG	4 cut(s)	12, 688, 793, 916
Tth111I	GACNNNGTC	1 cut(s)	165
Van91I	CCANNNNNTGG	1 cut(s)	265
VneI	GTGCAC	2 cut(s)	801, 933
VpaK11BI	GGWCC	1 cut(s)	279
XapI	RAATTY	2 cut(s)	639, 738
XmiI	GTMKAC	1 cut(s)	571
XspI	CTAG	2 cut(s)	620, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.