Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

29759899 .. 29764510

Gene Structure 4612 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G318100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCGGTTGCTGAGAATGCACCAAATTTCGACAACACAGCAGTATCATCAGACTCAAATGCACAGAACGATCTTGCAAACCCAAAACCCAGAGTTGATTCCTCTGTCGTGTTGAGTGCGGAACCCAATTTACAGTCAAACGGAGACGATCAGAATCCGCAGGACAAGTTTCAGAACCAGGAGAAAGTAACAACTTTGTCAGTCCCCACAAGCAATCACAAGCCTCAAATGGGTCAGATGCAAAATGGGTTTGACACCAATGGGGTCGATAACCATCAGATGGTGGCGGTCAAGTCTGGCGGGTATGGAATTGATCAGAGGTCTAATGGGGTAAGAAATGGAGGGGATGGGGATGAGAGTTTCAAACGTGATATGAGAGATTTGGAGGAGTTGTTGTCCAAGTTGAATCCCATGGCTAAGGAGTTTGTGCCTCCCTCACTTGTCAACAATCATGGGTTCAGTCTTGCTGGTGGGTTTGGCTATGCTAACAATTTTCTAGTACAAATTAATTCTGACAACGCCAATGGACTTATTGGAAGAAGGAAGAAGAATGGCTATAGTAGTCAAGGTCGGCGAAAGAACTATTACAAAATGAGTTTGGCACAGAGAGAGGAGATGATCAGGAGGACTGTGTATGTATCTGACATTGATCAACAGGTTACTGAAGAGAACCTGGCTGCTCTCTTTCTTAGTTGCGGACAGGTTGTAGACTGTCGTGTATGCGGTGATCCAAATTCCATTCTTCGATTTGCCTTTGTTGAGTTTACAGATGAAGAAGGTGCAAGGGTTGCCTTGAGTCTGTCAGGAACCATGCTTGGCTATTACCCAGTGAGAGTCCTGCCTTCGAAAACTGCAATTGCACCTGTTAATCCAACATTTTTGCCAAGGTCTGATGATGAGCGTGAGATGTGCTCAAGAACTATTTATTGTACAAATATTGACAAGAAGGTCACTCAAGCAGATGTCAAACTGTTTTTTGAATCACTTTGTGGAGAGGTTCAACGCCTGCGGCTACTTGGAGATTATCATCACTCCACTCGTATTGCGTTTGTTGAATTTACTGTGGCTGAAAGTGCAATTGCAGCTCTTAACTGTAGTGGTGTCGTTTTGGGATCACTGCCGATAAGGGTAAGCCCTTCAAAGACACCTGTTCGGCCCCGTGCTCCTCGCTCTCCATTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

395

Amino Acids

43.33

Weight (kDa)

6.26

Isoelectric Point (pI)

40.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	947
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccI	GTMKAC	1 cut(s)	708
AciI	CCGC	8 cut(s)	5, 119, 158, 287, 300, 696, 723, 1009
AclWI	GGATC	2 cut(s)	722, 1120
AcsI	RAATTY	3 cut(s)	25, 733, 1055
AcuI	CTGAAG	1 cut(s)	684
AdeI	CACNNNGTG	1 cut(s)	989
AfaI	GTAC	2 cut(s)	501, 931
AfiI	CCNNNNNNNGG	2 cut(s)	230, 280
AgsI	TTSAA	6 cut(s)	364, 406, 980, 1001, 1055, 1140
AjnI	CCWGG	2 cut(s)	177, 672
AluBI	AGCT	1 cut(s)	1085
AluI	AGCT	1 cut(s)	1085
Alw21I	GWGCWC	2 cut(s)	914, 1165
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	722, 1120
AoxI	GGCC	1 cut(s)	1154
ApeKI	GCWGC	2 cut(s)	677, 1082
ApoI	RAATTY	3 cut(s)	25, 733, 1055
AseI	ATTAAT	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	1155
AsuHPI	GGTGA	1 cut(s)	737
AsuII	TTCGAA	1 cut(s)	845
BaeI	ACNNNNGTAYC	2 cut(s)	27, 60
Bbv12I	GWGCWC	2 cut(s)	914, 1165
BbvI	GCAGC	2 cut(s)	664, 1094
BccI	CCATC	3 cut(s)	274, 282, 341
BciT130I	CCWGG	2 cut(s)	179, 674
BclI	TGATCA	3 cut(s)	313, 618, 649
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	2 cut(s)	556, 1093
BisI	GCNGC	3 cut(s)	678, 1010, 1083
BlsI	GCNGC	3 cut(s)	679, 1011, 1084
Bme1390I	CCNGG	2 cut(s)	179, 674
BmgT120I	GGNCC	1 cut(s)	1155
BmiI	GGNNCC	3 cut(s)	123, 808, 1157
BmrFI	CCNGG	2 cut(s)	179, 674
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	821
BplI	GAGNNNNNCTC	2 cut(s)	896, 928
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu14I	TTCGAA	1 cut(s)	845
BpuEI	CTTGAG	3 cut(s)	814, 898, 939
BsaBI	GATNNNNATC	3 cut(s)	153, 273, 1026
BsaJI	CCNNGG	2 cut(s)	411, 884
BsaXI	ACNNNNNCTCC	4 cut(s)	377, 380, 407, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 280
Bse1I	ACTGG	1 cut(s)	827
Bse3DI	GCAATG	1 cut(s)	1175
Bse8I	GATNNNNATC	3 cut(s)	153, 273, 1026
BseBI	CCWGG	2 cut(s)	179, 674
BseDI	CCNNGG	2 cut(s)	411, 884
BseGI	GGATG	2 cut(s)	352, 358
BseJI	GATNNNNATC	3 cut(s)	153, 273, 1026
BseLI	CCNNNNNNNGG	2 cut(s)	230, 280
BseMI	GCAATG	1 cut(s)	1175
BseNI	ACTGG	1 cut(s)	827
BseRI	GAGGAG	3 cut(s)	401, 626, 1155
BseXI	GCAGC	2 cut(s)	664, 1094
BshFI	GGCC	1 cut(s)	1156
BsiHKAI	GWGCWC	2 cut(s)	914, 1165
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	230, 280
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	188
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	1156
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	2 cut(s)	914, 1165
Bsp1407I	TGTACA	1 cut(s)	929
Bsp143I	GATC	7 cut(s)	70, 148, 313, 618, 649, 727, 1112
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	8 cut(s)	5, 119, 158, 287, 300, 696, 723, 1009
BspANI	GGCC	1 cut(s)	1156
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	3 cut(s)	123, 808, 1157
BspPI	GGATC	2 cut(s)	722, 1120
BspT104I	TTCGAA	1 cut(s)	845
BsrDI	GCAATG	1 cut(s)	1175
BsrGI	TGTACA	1 cut(s)	929
BsrI	ACTGG	1 cut(s)	827
BssECI	CCNNGG	2 cut(s)	411, 884
BssMI	GATC	7 cut(s)	70, 148, 313, 618, 649, 727, 1112
BssT1I	CCWWGG	2 cut(s)	411, 884
Bst2UI	CCWGG	2 cut(s)	179, 674
Bst4CI	ACNGT	6 cut(s)	135, 631, 713, 972, 1063, 1094
Bst6I	CTCTTC	1 cut(s)	660
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstAUI	TGTACA	1 cut(s)	929
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	1007
BstDEI	CTNAG	3 cut(s)	12, 417, 689
BstDSI	CCRYGG	1 cut(s)	411
BstF5I	GGATG	2 cut(s)	352, 358
BstKTI	GATC	7 cut(s)	73, 151, 316, 621, 652, 730, 1115
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	7 cut(s)	70, 148, 313, 618, 649, 727, 1112
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 788, 1073, 1082
BstNI	CCWGG	2 cut(s)	179, 674
BstSCI	CCNGG	2 cut(s)	177, 672
BstSFI	CTRYAG	2 cut(s)	556, 1093
BstV1I	GCAGC	2 cut(s)	664, 1094
BsuRI	GGCC	1 cut(s)	1156
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	352, 358
BtsI	GCAGTG	1 cut(s)	1115
BtsIMutI	CAGTG	2 cut(s)	834, 1115
Cac8I	GCNNGC	1 cut(s)	1007
Cfr13I	GGNCC	1 cut(s)	1155
Csp6I	GTAC	2 cut(s)	500, 930
CspCI	CAANNNNNGTGG	2 cut(s)	1024, 1059
CviAII	CATG	3 cut(s)	412, 452, 811
CviQI	GTAC	2 cut(s)	500, 930
DdeI	CTNAG	3 cut(s)	12, 417, 689
DpnI	GATC	7 cut(s)	72, 150, 315, 620, 651, 729, 1114
DpnII	GATC	7 cut(s)	70, 148, 313, 618, 649, 727, 1112
DraIII	CACNNNGTG	1 cut(s)	989
DrdI	GACNNNNNNGTC	1 cut(s)	947
DseDI	GACNNNNNNGTC	1 cut(s)	947
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco130I	CCWWGG	2 cut(s)	411, 884
Eco57I	CTGAAG	1 cut(s)	684
EcoRII	CCWGG	2 cut(s)	177, 672
EcoT14I	CCWWGG	2 cut(s)	411, 884
ErhI	CCWWGG	2 cut(s)	411, 884
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	3 cut(s)	415, 455, 814
FaiI	YATR	9 cut(s)	306, 374, 413, 453, 483, 558, 636, 721, 812
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	3 cut(s)	411, 451, 810
FauI	CCCGC	1 cut(s)	293
FbaI	TGATCA	3 cut(s)	313, 618, 649
FblI	GTMKAC	1 cut(s)	708
Fnu4HI	GCNGC	3 cut(s)	678, 1010, 1083
FokI	GGATG	2 cut(s)	359, 365
Fsp4HI	GCNGC	3 cut(s)	678, 1010, 1083
FspBI	CTAG	1 cut(s)	497
GluI	GCNGC	3 cut(s)	678, 1010, 1083
HaeIII	GGCC	1 cut(s)	1156
Hin1II	CATG	3 cut(s)	415, 455, 814
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	7 cut(s)	53, 98, 154, 406, 796, 834, 980
HphI	GGTGA	1 cut(s)	737
Hpy166II	GTNNAC	3 cut(s)	445, 709, 765
Hpy188I	TCNGA	9 cut(s)	52, 153, 174, 237, 279, 318, 514, 643, 892
Hpy188III	TCNNGA	3 cut(s)	622, 804, 915
Hpy8I	GTNNAC	3 cut(s)	445, 709, 765
HpyAV	CCTTC	5 cut(s)	534, 770, 852, 940, 1146
HpyCH4III	ACNGT	6 cut(s)	135, 631, 713, 972, 1063, 1094
HpyCH4IV	ACGT	1 cut(s)	367
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 788, 1073, 1082
HpyF3I	CTNAG	3 cut(s)	12, 417, 689
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	3 cut(s)	415, 455, 814
Ksp22I	TGATCA	3 cut(s)	313, 618, 649
Kzo9I	GATC	7 cut(s)	70, 148, 313, 618, 649, 727, 1112
LmnI	GCTCC	1 cut(s)	1168
Lsp1109I	GCAGC	2 cut(s)	664, 1094
LweI	GCATC	1 cut(s)	228
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	3 cut(s)	187, 658, 949
MalI	GATC	7 cut(s)	72, 150, 315, 620, 651, 729, 1114
MboI	GATC	7 cut(s)	70, 148, 313, 618, 649, 727, 1112
MboII	GAAGA	6 cut(s)	549, 556, 559, 677, 734, 785
MfeI	CAATTG	2 cut(s)	855, 1077
MhlI	GDGCHC	2 cut(s)	914, 1165
MlyI	GAGTC	3 cut(s)	47, 805, 843
MmeI	TCCRAC	1 cut(s)	896
MseI	TTAA	3 cut(s)	507, 867, 1089
MspR9I	CCNGG	2 cut(s)	179, 674
MunI	CAATTG	2 cut(s)	855, 1077
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	2 cut(s)	179, 674
MwoI	GCNNNNNNNGC	4 cut(s)	17, 788, 1073, 1082
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	7 cut(s)	70, 148, 313, 618, 649, 727, 1112
NlaIII	CATG	3 cut(s)	415, 455, 814
NlaIV	GGNNCC	3 cut(s)	123, 808, 1157
NmuCI	GTSAC	1 cut(s)	949
NspV	TTCGAA	1 cut(s)	845
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	4 cut(s)	98, 154, 406, 980
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	3 cut(s)	679, 1011, 1084
PleI	GAGTC	3 cut(s)	47, 804, 842
PpsI	GAGTC	3 cut(s)	47, 804, 842
PshBI	ATTAAT	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	177, 672
PspGI	CCWGG	2 cut(s)	177, 672
PspN4I	GGNNCC	3 cut(s)	123, 808, 1157
PspPI	GGNCC	1 cut(s)	1155
PsrI	GAACNNNNNNTAC	2 cut(s)	114, 146
RsaI	GTAC	2 cut(s)	501, 931
RsaNI	GTAC	2 cut(s)	500, 930
SaqAI	TTAA	3 cut(s)	507, 867, 1089
SatI	GCNGC	3 cut(s)	678, 1010, 1083
Sau3AI	GATC	7 cut(s)	70, 148, 313, 618, 649, 727, 1112
Sau96I	GGNCC	1 cut(s)	1155
SchI	GAGTC	3 cut(s)	47, 805, 843
ScrFI	CCNGG	2 cut(s)	179, 674
SduI	GDGCHC	2 cut(s)	914, 1165
SfaNI	GCATC	1 cut(s)	228
SfcI	CTRYAG	2 cut(s)	556, 1093
SfuI	TTCGAA	1 cut(s)	845
SmlI	CTYRAG	3 cut(s)	793, 913, 954
SmoI	CTYRAG	3 cut(s)	793, 913, 954
SsiI	CCGC	8 cut(s)	5, 119, 158, 287, 300, 696, 723, 1009
SspI	AATATT	1 cut(s)	937
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	177, 672
StyI	CCWWGG	2 cut(s)	411, 884
TaaI	ACNGT	6 cut(s)	135, 631, 713, 972, 1063, 1094
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	4 cut(s)	30, 267, 745, 845
TatI	WGTACW	2 cut(s)	499, 929
TauI	GCSGC	1 cut(s)	1012
TfiI	GAWTC	4 cut(s)	98, 154, 406, 980
Tru1I	TTAA	3 cut(s)	507, 867, 1089
Tru9I	TTAA	3 cut(s)	507, 867, 1089
TscAI	CASTG	2 cut(s)	834, 1122
TseFI	GTSAC	1 cut(s)	949
TseI	GCWGC	2 cut(s)	677, 1082
Tsp45I	GTSAC	1 cut(s)	949
TspDTI	ATGAA	1 cut(s)	786
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	2 cut(s)	834, 1122
Van91I	CCANNNNNTGG	1 cut(s)	280
VspI	ATTAAT	1 cut(s)	507
XapI	RAATTY	3 cut(s)	25, 733, 1055
XmiI	GTMKAC	1 cut(s)	708
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.