Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

26886500 .. 26889029

Gene Structure 2530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCGGTTGCTGAGAATGCACCAAATTTCGACAACACAGCAGTGTCGTCAGACTCGAATGCACAGAACGATCTCGGAAACCCAAAACCCAGAGTCGATTCCTCTGTTGCTCTGAGTGCTGAGCCCAATGTACAGTCCAACGGAGACGATCAAAGTGTCGAGGGGAAGTTTCAGGAGCAGGAGAAAGTGACAACTTTCTCAGTCGCCACTAACAATCACAAAGCTCCATCGGGTCAGACCCCAAATGGGTTTGATTCCAATGGGGTCGATAACCATCAGACGGAGGAGGCCAAGTCTGATGGTTATGTGATTGATCAGAGGTTGAATGGCGAAGGCGATGAGAATTACAACCGTGATATGAGAGATTTGGCGGACTTGTTGTCTAAGTTGAATCCCATGGCCGAGGAGTTTGTGCCTCCTTCCCTTATCAACAACAATGGCGGCTTCGATTTTGCTGGTGGGTTTGGATATACTAATGGTTTTGTACTGCACAGTAACTCTGGCAATGCCAATGGACTAATGGGTAGGAAGAAGAAGAATGGTTATAGTCAAGGTCGGCGTAAGAACTATTACAAATTGAATTTGGCTCAGAGAGAGGAAATGATTAGGAGGACTGTGTATGTATCTGACATTGATCAACAGGTTACTGAAGAGAACCTGGCTGCTCTTTTTCTTGGCTGTGGACAGGTTGTGGACTGTCGTGTCTGCGGTGATCCAAATTCAGTTCTTCGATTTGCCTTCATTGAGTTCACAGATGAAGAAGGTGCAAGGAATGCTCTAACTCTGTCAGGAACCATGCTTGGCTATTACCCAGTAAGGGTGCTGCCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGTCTGAGGATGAGCGTGAGATGTGCTCAAGGACTATTTACTGTACGAATATTGACAAGAAGGTTACTCAAGCTGATGTCAAACTCTTTTTTGAATCACTTTGTGGAGAGGTTCAGCGCCTGAGGCTGCTTGGTGACTATCAGCACTCCACTCGTATTGCTTTTGTTGAATTTACTGTGGCTGAAAGCGCAATTGCAGCTCTTAACTGTAGTGGTGTGGTTTTGGGATCGCTGCCGATAAGGGTAAGCCCCTCAAAGACACCAGTTCGACCCCGTACCCCTCGTTCTCCGTTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

390

Amino Acids

42.66

Weight (kDa)

5.18

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	701
AciI	CCGC	4 cut(s)	5, 371, 441, 708
AclWI	GGATC	2 cut(s)	707, 1105
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	4 cut(s)	25, 580, 718, 1040
AcuI	CTGAAG	1 cut(s)	669
AdeI	CACNNNGTG	1 cut(s)	974
AfaI	GTAC	4 cut(s)	132, 486, 916, 1147
AfiI	CCNNNNNNNGG	3 cut(s)	246, 280, 817
AgsI	TTSAA	6 cut(s)	325, 391, 580, 831, 965, 1040
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	657
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	3 cut(s)	224, 944, 1070
AluI	AGCT	3 cut(s)	224, 944, 1070
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	2 cut(s)	707, 1105
AlwNI	CAGNNNCTG	1 cut(s)	991
AoxI	GGCC	2 cut(s)	288, 399
ApeKI	GCWGC	5 cut(s)	662, 823, 997, 1067, 1102
ApoI	RAATTY	4 cut(s)	25, 580, 718, 1040
AspLEI	GCGC	2 cut(s)	990, 1061
AsuHPI	GGTGA	2 cut(s)	722, 1016
AxyI	CCTNAGG	1 cut(s)	992
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	899
BbvI	GCAGC	5 cut(s)	649, 810, 984, 1079, 1089
BccI	CCATC	3 cut(s)	235, 282, 293
BcgI	CGANNNNNNTGC	2 cut(s)	1004, 1038
BciT130I	CCWGG	1 cut(s)	659
BclI	TGATCA	2 cut(s)	313, 634
BcoDI	GTCTC	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	1078
BfoI	RGCGCY	1 cut(s)	991
BisI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1103
BlpI	GCTNAGC	1 cut(s)	120
BlsI	GCNGC	6 cut(s)	443, 664, 825, 999, 1069, 1104
Bme1390I	CCNGG	1 cut(s)	659
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	793
BmrFI	CCNGG	1 cut(s)	659
BmrI	ACTGGG	1 cut(s)	806
BmuI	ACTGGG	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
Bpu1102I	GCTNAGC	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	883, 924
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	3 cut(s)	396, 402, 869
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	3 cut(s)	246, 280, 817
Bse1I	ACTGG	2 cut(s)	812, 1133
Bse21I	CCTNAGG	1 cut(s)	992
Bse3DI	GCAATG	1 cut(s)	511
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	3 cut(s)	396, 402, 869
BseGI	GGATG	1 cut(s)	886
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	246, 280, 817
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	6 cut(s)	104, 111, 213, 602, 867, 983
BseNI	ACTGG	2 cut(s)	812, 1133
BseRI	GAGGAG	2 cut(s)	299, 419
BseXI	GCAGC	5 cut(s)	649, 810, 984, 1079, 1089
BsgI	GTGCAG	1 cut(s)	473
BshFI	GGCC	2 cut(s)	290, 401
BsiHKAI	GWGCWC	1 cut(s)	899
BslI	CCNNNNNNNGG	3 cut(s)	246, 280, 817
BsmAI	GTCTC	1 cut(s)	138
BsmBI	CGTCTC	1 cut(s)	138
BsmI	GAATGC	3 cut(s)	22, 64, 778
BsnI	GGCC	2 cut(s)	290, 401
Bsp1286I	GDGCHC	2 cut(s)	126, 899
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	6 cut(s)	70, 148, 313, 634, 712, 1097
Bsp1720I	GCTNAGC	1 cut(s)	120
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	4 cut(s)	5, 371, 441, 708
BspANI	GGCC	2 cut(s)	290, 401
BspCNI	CTCAG	7 cut(s)	4, 105, 112, 212, 601, 868, 984
BspLI	GGNNCC	1 cut(s)	793
BspPI	GGATC	2 cut(s)	707, 1105
BsrDI	GCAATG	1 cut(s)	511
BsrGI	TGTACA	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	812, 1133
BssECI	CCNNGG	3 cut(s)	396, 402, 869
BssMI	GATC	6 cut(s)	70, 148, 313, 634, 712, 1097
BssT1I	CCWWGG	2 cut(s)	396, 869
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	8 cut(s)	135, 353, 494, 616, 698, 914, 1048, 1079
Bst6I	CTCTTC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstAUI	TGTACA	1 cut(s)	130
BstDEI	CTNAG	8 cut(s)	12, 113, 120, 199, 384, 588, 876, 992
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	886
BstH2I	RGCGCY	1 cut(s)	991
BstHHI	GCGC	2 cut(s)	990, 1061
BstKTI	GATC	6 cut(s)	73, 151, 316, 637, 715, 1100
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	6 cut(s)	70, 148, 313, 634, 712, 1097
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 116, 773, 994, 1058, 1067
BstNI	CCWGG	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	657
BstSFI	CTRYAG	1 cut(s)	1078
BstV1I	GCAGC	5 cut(s)	649, 810, 984, 1079, 1089
Bsu36I	CCTNAGG	1 cut(s)	992
BsuRI	GGCC	2 cut(s)	290, 401
BtgI	CCRYGG	1 cut(s)	396
BtgZI	GCGATG	1 cut(s)	351
BtsCI	GGATG	1 cut(s)	886
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	991
CfoI	GCGC	2 cut(s)	990, 1061
Csp6I	GTAC	4 cut(s)	131, 485, 915, 1146
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	2 cut(s)	397, 796
CviQI	GTAC	4 cut(s)	131, 485, 915, 1146
DdeI	CTNAG	8 cut(s)	12, 113, 120, 199, 384, 588, 876, 992
DpnI	GATC	6 cut(s)	72, 150, 315, 636, 714, 1099
DpnII	GATC	6 cut(s)	70, 148, 313, 634, 712, 1097
DraIII	CACNNNGTG	1 cut(s)	974
DrdI	GACNNNNNNGTC	1 cut(s)	701
DriI	GACNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	701
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	645
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	1 cut(s)	386
Eco130I	CCWWGG	2 cut(s)	396, 869
Eco24I	GRGCYC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	992
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	396, 869
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	396, 869
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	400, 799
FaiI	YATR	7 cut(s)	306, 359, 398, 471, 546, 621, 797
FatI	CATG	2 cut(s)	396, 795
FbaI	TGATCA	2 cut(s)	313, 634
Fnu4HI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1103
FokI	GGATG	1 cut(s)	893
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1103
GlaI	GCGC	2 cut(s)	989, 1060
GluI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1103
HaeII	RGCGCY	1 cut(s)	991
HaeIII	GGCC	2 cut(s)	290, 401
HhaI	GCGC	2 cut(s)	990, 1061
Hin1II	CATG	2 cut(s)	400, 799
Hin6I	GCGC	2 cut(s)	988, 1059
HinP1I	GCGC	2 cut(s)	988, 1059
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	6 cut(s)	53, 93, 98, 254, 391, 965
HpaI	GTTAAC	1 cut(s)	853
HphI	GGTGA	2 cut(s)	722, 1016
Hpy166II	GTNNAC	4 cut(s)	683, 694, 750, 853
Hpy188III	TCNNGA	2 cut(s)	173, 789
Hpy8I	GTNNAC	4 cut(s)	683, 694, 750, 853
HpyAV	CCTTC	6 cut(s)	326, 429, 748, 755, 837, 925
HpyCH4III	ACNGT	8 cut(s)	135, 353, 494, 616, 698, 914, 1048, 1079
HpyCH4V	TGCA	8 cut(s)	20, 62, 490, 767, 839, 845, 1067, 1165
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 116, 773, 994, 1058, 1067
HpyF3I	CTNAG	8 cut(s)	12, 113, 120, 199, 384, 588, 876, 992
Hsp92II	CATG	2 cut(s)	400, 799
HspAI	GCGC	2 cut(s)	988, 1059
Ksp22I	TGATCA	2 cut(s)	313, 634
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	6 cut(s)	70, 148, 313, 634, 712, 1097
LmnI	GCTCC	2 cut(s)	175, 229
Lsp1109I	GCAGC	5 cut(s)	649, 810, 984, 1079, 1089
MaeIII	GTNAC	5 cut(s)	187, 494, 643, 934, 1004
MalI	GATC	6 cut(s)	72, 150, 315, 636, 714, 1099
MboI	GATC	6 cut(s)	70, 148, 313, 634, 712, 1097
MboII	GAAGA	6 cut(s)	541, 544, 547, 662, 719, 770
MfeI	CAATTG	2 cut(s)	840, 1062
MhlI	GDGCHC	2 cut(s)	126, 899
MluCI	AATT	8 cut(s)	25, 343, 575, 580, 718, 840, 1040, 1062
MlyI	GAGTC	2 cut(s)	47, 102
MmeI	TCCRAC	1 cut(s)	162
MseI	TTAA	2 cut(s)	852, 1074
MslI	CAYNNNNRTG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	659
MunI	CAATTG	2 cut(s)	840, 1062
Mva1269I	GAATGC	3 cut(s)	22, 64, 778
MvaI	CCWGG	1 cut(s)	659
MwoI	GCNNNNNNNGC	6 cut(s)	17, 116, 773, 994, 1058, 1067
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	6 cut(s)	70, 148, 313, 634, 712, 1097
NlaIII	CATG	2 cut(s)	400, 799
NlaIV	GGNNCC	1 cut(s)	793
NmeAIII	GCCGAG	1 cut(s)	427
NmuCI	GTSAC	2 cut(s)	187, 1004
OliI	CACNNNNGTG	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	3 cut(s)	22, 64, 778
PfeI	GAWTC	4 cut(s)	98, 254, 391, 965
PkrI	GCNGC	6 cut(s)	443, 664, 825, 999, 1069, 1104
PleI	GAGTC	2 cut(s)	47, 101
PpsI	GAGTC	2 cut(s)	47, 101
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspN4I	GGNNCC	1 cut(s)	793
PsrI	GAACNNNNNNTAC	2 cut(s)	1138, 1170
PstNI	CAGNNNCTG	1 cut(s)	991
RsaI	GTAC	4 cut(s)	132, 486, 916, 1147
RsaNI	GTAC	4 cut(s)	131, 485, 915, 1146
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	852, 1074
SatI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1103
Sau3AI	GATC	6 cut(s)	70, 148, 313, 634, 712, 1097
SchI	GAGTC	2 cut(s)	47, 102
ScrFI	CCNGG	1 cut(s)	659
SduI	GDGCHC	2 cut(s)	126, 899
SfcI	CTRYAG	1 cut(s)	1078
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	898, 939
SmoI	CTYRAG	2 cut(s)	898, 939
Sse9I	AATT	8 cut(s)	25, 343, 575, 580, 718, 840, 1040, 1062
SsiI	CCGC	4 cut(s)	5, 371, 441, 708
SspI	AATATT	1 cut(s)	922
StyD4I	CCNGG	1 cut(s)	657
StyI	CCWWGG	2 cut(s)	396, 869
TaaI	ACNGT	8 cut(s)	135, 353, 494, 616, 698, 914, 1048, 1079
TaqI	TCGA	8 cut(s)	30, 56, 96, 159, 267, 447, 730, 1138
TasI	AATT	8 cut(s)	25, 343, 575, 580, 718, 840, 1040, 1062
TatI	WGTACW	2 cut(s)	130, 484
TauI	GCSGC	1 cut(s)	444
TfiI	GAWTC	4 cut(s)	98, 254, 391, 965
Tru1I	TTAA	2 cut(s)	852, 1074
Tru9I	TTAA	2 cut(s)	852, 1074
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	187, 1004
TseI	GCWGC	5 cut(s)	662, 823, 997, 1067, 1102
Tsp45I	GTSAC	2 cut(s)	187, 1004
TspDTI	ATGAA	2 cut(s)	730, 771
TspGWI	ACGGA	3 cut(s)	156, 296, 1149
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	4 cut(s)	25, 580, 718, 1040
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.