Rh7BG088300

Polyadenylate-binding protein-interacting protein 11-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
6531604 .. 6536426
4823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG088300.1

Sequence Viewer

Length: 1098 bp
ATGGCAGTGGTTGAGAATCTCGAGAATGCTGGGGTGGAGTTGGGGAAGACCGTGGGGTCCGCCTCAGCGAATCGGAACCCGGAGGTTACGACGGAGCAGCCATCGGCGGCTGCTGCTGGTGTTGCCGTGACATCCAACGATCAGGATCAGTCCTCGGCCAAGCACGGGCCTTTACGGCAGCGGCTCGAGGCGGCTCTACAGCAGCAGCAGCAGTACGCGATGGTAAACGGTAACGGTAACGGGAACCAGAACGGTCAGCTGAGCTTCGATCATCACCAGCAGCGATCTAACGGCGAGATGAACGGCGGGGATCACCACGACGTGGGGGACAGCTTCAATCGGGACATGAGGGAGCTGAGGGAGCTCTTCTCTAAGCTCAACCCCATGGCGGAGGAGTTTGTGCCTCCCTCACATGCTAACAACAACCATGGAATCAGCGGTGGGTTTGTTGACTTCACCGCACTGATGATGCAGAATGGAAACAGAATCGGACAAATTAACGGTGGTGGTTTTCCCGGCCGACGAAGGAATAATCAAGGAAAGAGGAGAATGAACAGCAGGACCAGTCTAGCCCAGCGTGAAGATAGAATTCGAAGGACTGTGTATGTGTCTGACATTGATCAACAGGTCACTGAGGAACAGCTCGCAGCGCTATTCATTACTTGTGGGCAGGTTGTTGACTGTCGAATTTGTGGTGACCCGAATTCTGTACTCCGTTTTGCCTTTATCGAGTTCACTGATGAAGAAGGTGCAAGGGCTGCTTTGAGTCTTGCTGGGACAATGCTTGGGTTCTACCCTGTGAGGGTGTTGCCTTCTAAGACAGCTATTGCACCTGTTAACCCAACATTCTTGCCTCGGACTGAAGATGAACGTGAGATGTGTGCAAGAACGATATACTGTACAAATATTGACAAGAAGGTTTCTCAAGCTGATGTTAAGCTCTTTTTTGAATCAGTTTGTGGAGAGGTTTATCGTCTGAGGCTGCTGGGAGACTATCACCACTCCACTCGTATTGCATTTGTTGAGTTTGTGATGGTATTTATCTCTTCCTCTAATCTTGCATTTGTATTTTCTGTTTTTTTTTTCTTCTCATATTAG

Protein Analysis

365

Amino Acids

40.48

Weight (kDa)

6.02

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAM2 PF07145 122 - 138 7.7e-06 Ataxin-2 C-terminal region
RRM_1 PF00076 201 - 263 3e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 661
AccB7I CCANNNNNTGG 1 cut(s) 322
AccII CGCG 1 cut(s) 218
AciI CCGC 8 cut(s) 60, 107, 181, 191, 306, 389, 438, 459
AclWI GGATC 2 cut(s) 153, 318
AcoI YGGCCR 2 cut(s) 156, 517
AcsI RAATTY 3 cut(s) 588, 687, 703
AcuI CTGAAG 1 cut(s) 882
AdeI CACNNNGTG 1 cut(s) 322
AfaI GTAC 3 cut(s) 215, 711, 901
AfeI AGCGCT 1 cut(s) 651
AfiI CCNNNNNNNGG 4 cut(s) 165, 322, 388, 802
AgsI TTSAA 2 cut(s) 337, 950
AjiI CACGTC 1 cut(s) 322
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 1 cut(s) 984
AlwI GGATC 2 cut(s) 153, 318
Ama87I CYCGRG 2 cut(s) 20, 185
Aor51HI AGCGCT 1 cut(s) 651
AoxI GGCC 3 cut(s) 156, 167, 517
ApoI RAATTY 3 cut(s) 588, 687, 703
AspLEI GCGC 1 cut(s) 652
AspS9I GGNCC 3 cut(s) 57, 167, 561
AsuC2I CCSGG 2 cut(s) 80, 516
AsuHPI GGTGA 5 cut(s) 266, 305, 448, 707, 989
AsuII TTCGAA 1 cut(s) 592
AvaI CYCGRG 2 cut(s) 20, 185
AvaII GGWCC 2 cut(s) 57, 561
BanII GRGCYC 1 cut(s) 366
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 366
BbvCI CCTCAGC 2 cut(s) 64, 356
BccI CCATC 3 cut(s) 109, 214, 1027
BceAI ACGGC 4 cut(s) 110, 191, 307, 319
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 2 cut(s) 80, 516
BcoDI GTCTC 1 cut(s) 984
BfaI CTAG 1 cut(s) 569
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 653
BfuAI ACCTGC 1 cut(s) 661
BglI GCCNNNNNGGC 1 cut(s) 175
BlpI GCTNAGC 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 80, 516
Bme18I GGWCC 2 cut(s) 57, 561
BmeT110I CYCGRG 2 cut(s) 20, 185
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 3 cut(s) 57, 167, 561
BmiI GGNNCC 3 cut(s) 58, 77, 245
BmrFI CCNGG 2 cut(s) 80, 516
BmsI GCATC 1 cut(s) 459
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 353, 385
Bpu10I CCTNAGC 2 cut(s) 64, 356
Bpu1102I GCTNAGC 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 592
BpuEI CTTGAG 1 cut(s) 909
BpuMI CCSGG 2 cut(s) 80, 516
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 5 cut(s) 51, 153, 384, 427, 854
Bsc4I CCNNNNNNNGG 4 cut(s) 165, 322, 388, 802
Bse1I ACTGG 1 cut(s) 564
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 5 cut(s) 51, 153, 384, 427, 854
BseGI GGATG 1 cut(s) 131
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 4 cut(s) 165, 322, 388, 802
BseMII CTCAG 5 cut(s) 78, 251, 347, 624, 968
BseNI ACTGG 1 cut(s) 564
BseRI GAGGAG 2 cut(s) 407, 559
BseX3I CGGCCG 1 cut(s) 517
BseYI CCCAGC 4 cut(s) 29, 573, 773, 985
Bsh1236I CGCG 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 520
BshFI GGCC 3 cut(s) 158, 169, 519
BsiEI CGRYCG 1 cut(s) 520
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 2 cut(s) 20, 185
BsiSI CCGG 2 cut(s) 80, 516
BslFI GGGAC 3 cut(s) 341, 356, 790
BslI CCNNNNNNNGG 4 cut(s) 165, 322, 388, 802
BsmAI GTCTC 1 cut(s) 984
BsmFI GGGAC 3 cut(s) 341, 356, 790
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 158, 169, 519
BsoBI CYCGRG 2 cut(s) 20, 185
Bsp119I TTCGAA 1 cut(s) 592
Bsp1286I GDGCHC 1 cut(s) 366
Bsp1407I TGTACA 1 cut(s) 899
Bsp143I GATC 6 cut(s) 139, 145, 268, 284, 310, 619
Bsp1720I GCTNAGC 1 cut(s) 260
Bsp19I CCATGG 2 cut(s) 384, 427
BspACI CCGC 8 cut(s) 60, 107, 181, 191, 306, 389, 438, 459
BspANI GGCC 3 cut(s) 158, 169, 519
BspCNI CTCAG 5 cut(s) 77, 252, 348, 625, 969
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 3 cut(s) 58, 77, 245
BspMI ACCTGC 1 cut(s) 661
BspPI GGATC 2 cut(s) 153, 318
BspQI GCTCTTC 1 cut(s) 371
BspT104I TTCGAA 1 cut(s) 592
BsrGI TGTACA 1 cut(s) 899
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 5 cut(s) 51, 153, 384, 427, 854
BssMI GATC 6 cut(s) 139, 145, 268, 284, 310, 619
BssT1I CCWWGG 2 cut(s) 384, 427
Bst4CI ACNGT 8 cut(s) 52, 230, 236, 254, 503, 601, 683, 899
Bst6I CTCTTC 2 cut(s) 371, 1051
BstAPI GCANNNNNTGC 1 cut(s) 758
BstAUI TGTACA 1 cut(s) 899
BstBI TTCGAA 1 cut(s) 592
BstC8I GCNNGC 1 cut(s) 645
BstDEI CTNAG 7 cut(s) 64, 260, 356, 372, 633, 816, 977
BstDSI CCRYGG 3 cut(s) 51, 384, 427
BstEII GGTNACC 1 cut(s) 695
BstF5I GGATG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 218
BstH2I RGCGCY 1 cut(s) 653
BstHHI GCGC 1 cut(s) 652
BstKTI GATC 6 cut(s) 142, 148, 271, 287, 313, 622
BstMAI GTCTC 1 cut(s) 984
BstMBI GATC 6 cut(s) 139, 145, 268, 284, 310, 619
BstMCI CGRYCG 1 cut(s) 520
BstMWI GCNNNNNNNGC 7 cut(s) 113, 122, 175, 208, 361, 649, 758
BstNSI RCATGY 1 cut(s) 416
BstPI GGTNACC 1 cut(s) 695
BstSCI CCNGG 2 cut(s) 78, 514
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 1 cut(s) 218
BstV2I GAAGAC 1 cut(s) 53
BstZI CGGCCG 1 cut(s) 517
BsuRI GGCC 3 cut(s) 158, 169, 519
BtgI CCRYGG 3 cut(s) 51, 384, 427
BtgZI GCGATG 1 cut(s) 233
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 461, 630, 735
BveI ACCTGC 1 cut(s) 661
Cac8I GCNNGC 1 cut(s) 645
CfoI GCGC 1 cut(s) 652
Cfr13I GGNCC 3 cut(s) 57, 167, 561
Csp6I GTAC 3 cut(s) 214, 710, 900
CspCI CAANNNNNGTGG 2 cut(s) 994, 1029
CviAII CATG 4 cut(s) 346, 385, 413, 428
CviQI GTAC 3 cut(s) 214, 710, 900
DdeI CTNAG 7 cut(s) 64, 260, 356, 372, 633, 816, 977
DpnI GATC 6 cut(s) 141, 147, 270, 286, 312, 621
DpnII GATC 6 cut(s) 139, 145, 268, 284, 310, 619
DraIII CACNNNGTG 1 cut(s) 322
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 2 cut(s) 156, 517
EagI CGGCCG 1 cut(s) 517
Eam1104I CTCTTC 2 cut(s) 371, 1051
EarI CTCTTC 2 cut(s) 371, 1051
EciI GGCGGA 2 cut(s) 49, 404
Ecl136II GAGCTC 1 cut(s) 364
EclXI CGGCCG 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 384, 427
Eco24I GRGCYC 1 cut(s) 366
Eco47I GGWCC 2 cut(s) 57, 561
Eco47III AGCGCT 1 cut(s) 651
Eco52I CGGCCG 1 cut(s) 517
Eco53kI GAGCTC 1 cut(s) 364
Eco57I CTGAAG 1 cut(s) 882
Eco88I CYCGRG 2 cut(s) 20, 185
Eco91I GGTNACC 1 cut(s) 695
EcoICRI GAGCTC 1 cut(s) 364
EcoO65I GGTNACC 1 cut(s) 695
EcoRI GAATTC 2 cut(s) 588, 703
EcoT14I CCWWGG 2 cut(s) 384, 427
EcoT38I GRGCYC 1 cut(s) 366
ErhI CCWWGG 2 cut(s) 384, 427
FaeI CATG 4 cut(s) 349, 388, 416, 431
FaiI YATR 7 cut(s) 347, 386, 414, 429, 606, 895, 1093
FalI AAGNNNNNCTT 2 cut(s) 745, 777
FaqI GGGAC 3 cut(s) 341, 356, 790
FatI CATG 4 cut(s) 345, 384, 412, 427
FauI CCCGC 1 cut(s) 299
FbaI TGATCA 1 cut(s) 619
FokI GGATG 1 cut(s) 118
FriOI GRGCYC 1 cut(s) 366
FspBI CTAG 1 cut(s) 569
GlaI GCGC 1 cut(s) 651
GsaI CCCAGC 4 cut(s) 33, 577, 777, 989
HaeII RGCGCY 1 cut(s) 653
HaeIII GGCC 3 cut(s) 158, 169, 519
HapII CCGG 2 cut(s) 80, 516
HhaI GCGC 1 cut(s) 652
Hin1II CATG 4 cut(s) 349, 388, 416, 431
Hin6I GCGC 1 cut(s) 650
HinP1I GCGC 1 cut(s) 650
HincII GTYRAC 3 cut(s) 451, 679, 838
HindII GTYRAC 3 cut(s) 451, 679, 838
HinfI GANTC 6 cut(s) 16, 70, 432, 486, 766, 950
HpaI GTTAAC 1 cut(s) 838
HpaII CCGG 2 cut(s) 80, 516
HphI GGTGA 5 cut(s) 266, 305, 448, 707, 989
Hpy166II GTNNAC 5 cut(s) 226, 451, 679, 735, 838
Hpy188I TCNGA 5 cut(s) 75, 491, 613, 858, 978
Hpy188III TCNNGA 4 cut(s) 20, 22, 143, 341
Hpy8I GTNNAC 5 cut(s) 226, 451, 679, 735, 838
Hpy99I CGWCG 3 cut(s) 94, 323, 525
HpyAV CCTTC 5 cut(s) 519, 588, 740, 822, 910
HpyCH4III ACNGT 8 cut(s) 52, 230, 236, 254, 503, 601, 683, 899
HpyCH4IV ACGT 2 cut(s) 321, 871
HpyCH4V TGCA 6 cut(s) 472, 752, 830, 884, 1016, 1061
HpyF10VI GCNNNNNNNGC 7 cut(s) 113, 122, 175, 208, 361, 649, 758
HpyF3I CTNAG 7 cut(s) 64, 260, 356, 372, 633, 816, 977
HpySE526I ACGT 2 cut(s) 321, 871
Hsp92II CATG 4 cut(s) 349, 388, 416, 431
HspAI GCGC 1 cut(s) 650
Ksp22I TGATCA 1 cut(s) 619
KspAI GTTAAC 1 cut(s) 838
Kzo9I GATC 6 cut(s) 139, 145, 268, 284, 310, 619
LguI GCTCTTC 1 cut(s) 371
LmnI GCTCC 3 cut(s) 94, 352, 361
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 569
MaeII ACGT 2 cut(s) 321, 871
MaeIII GTNAC 6 cut(s) 85, 127, 230, 236, 628, 695
MalI GATC 6 cut(s) 141, 147, 270, 286, 312, 621
MboI GATC 6 cut(s) 139, 145, 268, 284, 310, 619
MboII GAAGA 7 cut(s) 58, 358, 593, 755, 875, 1038, 1078
MhlI GDGCHC 1 cut(s) 366
MluCI AATT 4 cut(s) 495, 588, 687, 703
MlyI GAGTC 1 cut(s) 775
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 3 cut(s) 498, 837, 936
MspA1I CMGCKG 3 cut(s) 181, 259, 438
MspI CCGG 2 cut(s) 80, 516
MspR9I CCNGG 2 cut(s) 80, 516
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 7 cut(s) 113, 122, 175, 208, 361, 649, 758
NciI CCSGG 2 cut(s) 80, 516
NcoI CCATGG 2 cut(s) 384, 427
NdeII GATC 6 cut(s) 139, 145, 268, 284, 310, 619
NlaIII CATG 4 cut(s) 349, 388, 416, 431
NlaIV GGNNCC 3 cut(s) 58, 77, 245
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 3 cut(s) 127, 628, 695
NspI RCATGY 1 cut(s) 416
NspV TTCGAA 1 cut(s) 592
PaeR7I CTCGAG 2 cut(s) 20, 185
PciSI GCTCTTC 1 cut(s) 371
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 5 cut(s) 16, 70, 432, 486, 950
PflMI CCANNNNNTGG 1 cut(s) 322
PleI GAGTC 1 cut(s) 774
PpsI GAGTC 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 366
PspEI GGTNACC 1 cut(s) 695
PspFI CCCAGC 4 cut(s) 29, 573, 773, 985
PspN4I GGNNCC 3 cut(s) 58, 77, 245
PspPI GGNCC 3 cut(s) 57, 167, 561
PspXI VCTCGAGB 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 259
RsaI GTAC 3 cut(s) 215, 711, 901
RsaNI GTAC 3 cut(s) 214, 710, 900
SacI GAGCTC 1 cut(s) 366
SapI GCTCTTC 1 cut(s) 371
SaqAI TTAA 3 cut(s) 498, 837, 936
Sau3AI GATC 6 cut(s) 139, 145, 268, 284, 310, 619
Sau96I GGNCC 3 cut(s) 57, 167, 561
SchI GAGTC 1 cut(s) 775
ScrFI CCNGG 2 cut(s) 80, 516
SduI GDGCHC 1 cut(s) 366
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 197
Sfr274I CTCGAG 2 cut(s) 20, 185
SfuI TTCGAA 1 cut(s) 592
SinI GGWCC 2 cut(s) 57, 561
SlaI CTCGAG 2 cut(s) 20, 185
SmlI CTYRAG 3 cut(s) 20, 185, 924
SmoI CTYRAG 3 cut(s) 20, 185, 924
Sse9I AATT 4 cut(s) 495, 588, 687, 703
SsiI CCGC 8 cut(s) 60, 107, 181, 191, 306, 389, 438, 459
SspI AATATT 1 cut(s) 907
SspMI CTAG 1 cut(s) 569
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 2 cut(s) 78, 514
StyI CCWWGG 2 cut(s) 384, 427
TaaI ACNGT 8 cut(s) 52, 230, 236, 254, 503, 601, 683, 899
TaiI ACGT 2 cut(s) 324, 874
TaqI TCGA 6 cut(s) 21, 186, 267, 592, 685, 729
TasI AATT 4 cut(s) 495, 588, 687, 703
TatI WGTACW 2 cut(s) 709, 899
TauI GCSGC 3 cut(s) 110, 184, 194
TfiI GAWTC 5 cut(s) 16, 70, 432, 486, 950
Tru1I TTAA 3 cut(s) 498, 837, 936
Tru9I TTAA 3 cut(s) 498, 837, 936
TscAI CASTG 4 cut(s) 12, 468, 637, 742
TseFI GTSAC 3 cut(s) 127, 628, 695
Tsp45I GTSAC 3 cut(s) 127, 628, 695
TspDTI ATGAA 5 cut(s) 314, 566, 646, 756, 882
TspGWI ACGGA 2 cut(s) 107, 704
TspRI CASTG 4 cut(s) 12, 468, 637, 742
Van91I CCANNNNNTGG 1 cut(s) 322
VpaK11BI GGWCC 2 cut(s) 57, 561
XapI RAATTY 3 cut(s) 588, 687, 703
XceI RCATGY 1 cut(s) 416
XhoI CTCGAG 2 cut(s) 20, 185
XspI CTAG 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.