Rmu_sc0019127.1_g000002

Polyadenylate-binding protein-interacting protein 11-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019127.1
Physical Location & Seq
Reverse (-)
2225 .. 6200
3976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019127.1_g000002.1.cds

Sequence Viewer

Length: 1167 bp
atggcagtggttgagaatctcgagaatgctggggtggagttggggaagaccgtggggtccgcctcagggaatcggaacccggaggttacgacggagcagccatcggcggctgctgctggtgttgccgtgacatccaacgatcaggatcagtcctcggccaagcacgggcctttacggcagcggctcgaggcggctctacagcagcagcagcagcagtacgcgatggtaagcggtaacggtaacgggaaccagaacggtcagctgagcttcgatcaggtggtgcatcaccagcagcgatctaacggcgagatgaacggcggggatcaccacaacgtgggggacagcttcaatcgggacatgagggagctgagggagctcttctctaagctcaaccccatggcggaggagtttgtgcctccctcacatgctaacaacaaccatggaatcaacggtgggtttgttgacttcaccgcactgatgatgcagaatggaaacagaatcggacaaattaacggtggtggttttcccggccgacgaaggaataatcaaggaaagaggagaatgaacagcaggaccagtctagcccagcgagaagatagaattcgaaggactgtgtatgtgtctgacattgatcaacaggtcactgaggaacagctcgcagcgctattcgttacttgtgggcaggttgttgactgccgaatttgtggtgacccgaattctgtactccgttttgcctttatcgagttcactgatgaagaaggtgcaagggctgctttgagtcttgccgggacaatgcttgggttctaccctgtgagggtgttgccttctaagacagctattgcacctgttaacccaacattcttgcctcggactgaagatgaacgtgagatgtgtgcaagaacgatatactgtacaaatattgacaagaaggtttctcaagctgatgttaagctcttttttgaatcagtttgtggagaggtttatcgtctgaggctgctgggagactatcaccactccactcgtattgcatttgttgagtttgtgatggctgaaagtgcaattgctgctctcaattgtagtggtgtggttttgggatcattgccaatcagggtaagtccatccaagacacctgttcgtccacgcgctcctcgccttcccatacattga

Protein Analysis

388

Amino Acids

42.58

Weight (kDa)

7.15

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 673
AccB7I CCANNNNNTGG 1 cut(s) 334
AccII CGCG 2 cut(s) 221, 1143
AciI CCGC 8 cut(s) 60, 107, 181, 191, 231, 318, 401, 471
AclWI GGATC 3 cut(s) 153, 330, 1102
AcoI YGGCCR 2 cut(s) 156, 529
AcsI RAATTY 3 cut(s) 600, 699, 715
AcuI CTGAAG 1 cut(s) 894
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 3 cut(s) 218, 723, 913
AfeI AGCGCT 1 cut(s) 663
AfiI CCNNNNNNNGG 5 cut(s) 66, 165, 334, 400, 814
AgsI TTSAA 2 cut(s) 349, 962
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 996
AlwI GGATC 3 cut(s) 153, 330, 1102
Ama87I CYCGRG 2 cut(s) 20, 185
Aor51HI AGCGCT 1 cut(s) 663
AoxI GGCC 3 cut(s) 156, 167, 529
ApoI RAATTY 3 cut(s) 600, 699, 715
AspLEI GCGC 2 cut(s) 664, 1145
AspS9I GGNCC 3 cut(s) 57, 167, 573
AsuC2I CCSGG 3 cut(s) 80, 528, 787
AsuHPI GGTGA 5 cut(s) 278, 317, 460, 719, 1001
AsuII TTCGAA 1 cut(s) 604
AvaI CYCGRG 2 cut(s) 20, 185
AvaII GGWCC 2 cut(s) 57, 573
AxyI CCTNAGG 1 cut(s) 64
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 368
BccI CCATC 4 cut(s) 109, 217, 1039, 1126
BceAI ACGGC 4 cut(s) 110, 191, 319, 331
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 3 cut(s) 80, 528, 787
BcoDI GTCTC 1 cut(s) 996
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 197
BfoI RGCGCY 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 673
BglI GCCNNNNNGGC 1 cut(s) 175
BlpI GCTNAGC 1 cut(s) 263
Bme1390I CCNGG 3 cut(s) 80, 528, 787
Bme18I GGWCC 2 cut(s) 57, 573
BmeT110I CYCGRG 2 cut(s) 20, 185
BmgT120I GGNCC 3 cut(s) 57, 167, 573
BmiI GGNNCC 3 cut(s) 58, 77, 248
BmrFI CCNGG 3 cut(s) 80, 528, 787
BmsI GCATC 2 cut(s) 292, 471
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 365, 397
Bpu10I CCTNAGC 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 604
BpuEI CTTGAG 1 cut(s) 921
BpuMI CCSGG 3 cut(s) 80, 528, 787
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 5 cut(s) 51, 153, 396, 439, 866
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 165, 334, 400, 814
Bse1I ACTGG 1 cut(s) 576
Bse21I CCTNAGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 1097
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 5 cut(s) 51, 153, 396, 439, 866
BseGI GGATG 2 cut(s) 131, 1118
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 5 cut(s) 66, 165, 334, 400, 814
BseMI GCAATG 1 cut(s) 1097
BseMII CTCAG 5 cut(s) 78, 254, 359, 636, 980
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 3 cut(s) 419, 571, 1137
BseX3I CGGCCG 1 cut(s) 529
BseYI CCCAGC 3 cut(s) 29, 585, 997
Bsh1236I CGCG 2 cut(s) 221, 1143
Bsh1285I CGRYCG 1 cut(s) 532
BshFI GGCC 3 cut(s) 158, 169, 531
BsiEI CGRYCG 1 cut(s) 532
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 20, 185
BsiSI CCGG 3 cut(s) 80, 528, 786
BslFI GGGAC 3 cut(s) 353, 368, 802
BslI CCNNNNNNNGG 5 cut(s) 66, 165, 334, 400, 814
BsmAI GTCTC 1 cut(s) 996
BsmFI GGGAC 3 cut(s) 353, 368, 802
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 158, 169, 531
BsoBI CYCGRG 2 cut(s) 20, 185
Bsp119I TTCGAA 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 378
Bsp1407I TGTACA 1 cut(s) 911
Bsp143I GATC 7 cut(s) 139, 145, 271, 296, 322, 631, 1094
Bsp1720I GCTNAGC 1 cut(s) 263
Bsp19I CCATGG 2 cut(s) 396, 439
BspACI CCGC 8 cut(s) 60, 107, 181, 191, 231, 318, 401, 471
BspANI GGCC 3 cut(s) 158, 169, 531
BspCNI CTCAG 5 cut(s) 77, 255, 360, 637, 981
BspFNI CGCG 2 cut(s) 221, 1143
BspLI GGNNCC 3 cut(s) 58, 77, 248
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 3 cut(s) 153, 330, 1102
BspQI GCTCTTC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 604
BsrDI GCAATG 1 cut(s) 1097
BsrGI TGTACA 1 cut(s) 911
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 5 cut(s) 51, 153, 396, 439, 866
BssMI GATC 7 cut(s) 139, 145, 271, 296, 322, 631, 1094
BssT1I CCWWGG 2 cut(s) 396, 439
Bst4CI ACNGT 7 cut(s) 52, 239, 257, 452, 515, 613, 911
Bst6I CTCTTC 1 cut(s) 383
BstAPI GCANNNNNTGC 2 cut(s) 770, 1064
BstAUI TGTACA 1 cut(s) 911
BstBI TTCGAA 1 cut(s) 604
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 7 cut(s) 64, 263, 368, 384, 645, 828, 989
BstDSI CCRYGG 3 cut(s) 51, 396, 439
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 2 cut(s) 131, 1118
BstFNI CGCG 2 cut(s) 221, 1143
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 2 cut(s) 664, 1145
BstKTI GATC 7 cut(s) 142, 148, 274, 299, 325, 634, 1097
BstMAI GTCTC 1 cut(s) 996
BstMBI GATC 7 cut(s) 139, 145, 271, 296, 322, 631, 1094
BstMCI CGRYCG 1 cut(s) 532
BstNSI RCATGY 1 cut(s) 428
BstPI GGTNACC 1 cut(s) 707
BstSCI CCNGG 3 cut(s) 78, 526, 785
BstSFI CTRYAG 1 cut(s) 197
BstUI CGCG 2 cut(s) 221, 1143
BstV2I GAAGAC 1 cut(s) 53
BstZI CGGCCG 1 cut(s) 529
Bsu36I CCTNAGG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 158, 169, 531
BtgI CCRYGG 3 cut(s) 51, 396, 439
BtgZI GCGATG 1 cut(s) 236
BtsCI GGATG 2 cut(s) 131, 1118
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 473, 642, 747
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 657
CfoI GCGC 2 cut(s) 664, 1145
Cfr13I GGNCC 3 cut(s) 57, 167, 573
Csp6I GTAC 3 cut(s) 217, 722, 912
CspCI CAANNNNNGTGG 4 cut(s) 1006, 1041, 1060, 1095
CviAII CATG 4 cut(s) 358, 397, 425, 440
CviQI GTAC 3 cut(s) 217, 722, 912
DdeI CTNAG 7 cut(s) 64, 263, 368, 384, 645, 828, 989
DpnI GATC 7 cut(s) 141, 147, 273, 298, 324, 633, 1096
DpnII GATC 7 cut(s) 139, 145, 271, 296, 322, 631, 1094
DraIII CACNNNGTG 1 cut(s) 334
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 2 cut(s) 156, 529
EagI CGGCCG 1 cut(s) 529
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
EciI GGCGGA 2 cut(s) 49, 416
Ecl136II GAGCTC 1 cut(s) 376
EclXI CGGCCG 1 cut(s) 529
Eco130I CCWWGG 2 cut(s) 396, 439
Eco24I GRGCYC 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 57, 573
Eco47III AGCGCT 1 cut(s) 663
Eco52I CGGCCG 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 894
Eco81I CCTNAGG 1 cut(s) 64
Eco88I CYCGRG 2 cut(s) 20, 185
Eco91I GGTNACC 1 cut(s) 707
EcoICRI GAGCTC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 707
EcoRI GAATTC 2 cut(s) 600, 715
EcoT14I CCWWGG 2 cut(s) 396, 439
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 2 cut(s) 396, 439
FaeI CATG 4 cut(s) 361, 400, 428, 443
FaiI YATR 7 cut(s) 359, 398, 426, 441, 618, 907, 1160
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FaqI GGGAC 3 cut(s) 353, 368, 802
FatI CATG 4 cut(s) 357, 396, 424, 439
FauI CCCGC 1 cut(s) 311
FbaI TGATCA 1 cut(s) 631
FokI GGATG 2 cut(s) 118, 1105
FriOI GRGCYC 1 cut(s) 378
FspBI CTAG 1 cut(s) 581
GlaI GCGC 2 cut(s) 663, 1144
GsaI CCCAGC 3 cut(s) 33, 589, 1001
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 3 cut(s) 158, 169, 531
HapII CCGG 3 cut(s) 80, 528, 786
HhaI GCGC 2 cut(s) 664, 1145
Hin1II CATG 4 cut(s) 361, 400, 428, 443
Hin6I GCGC 2 cut(s) 662, 1143
HinP1I GCGC 2 cut(s) 662, 1143
HincII GTYRAC 3 cut(s) 463, 691, 850
HindII GTYRAC 3 cut(s) 463, 691, 850
HinfI GANTC 6 cut(s) 16, 70, 444, 498, 778, 962
HpaI GTTAAC 1 cut(s) 850
HpaII CCGG 3 cut(s) 80, 528, 786
HphI GGTGA 5 cut(s) 278, 317, 460, 719, 1001
Hpy166II GTNNAC 5 cut(s) 463, 691, 747, 850, 1139
Hpy188I TCNGA 5 cut(s) 75, 503, 625, 870, 990
Hpy188III TCNNGA 4 cut(s) 20, 22, 143, 353
Hpy8I GTNNAC 5 cut(s) 463, 691, 747, 850, 1139
Hpy99I CGWCG 2 cut(s) 94, 537
HpyAV CCTTC 6 cut(s) 531, 600, 752, 834, 922, 1163
HpyCH4III ACNGT 7 cut(s) 52, 239, 257, 452, 515, 613, 911
HpyCH4IV ACGT 2 cut(s) 333, 883
HpyCH4V TGCA 7 cut(s) 283, 484, 764, 842, 896, 1028, 1058
HpyF3I CTNAG 7 cut(s) 64, 263, 368, 384, 645, 828, 989
HpySE526I ACGT 2 cut(s) 333, 883
Hsp92II CATG 4 cut(s) 361, 400, 428, 443
HspAI GCGC 2 cut(s) 662, 1143
Ksp22I TGATCA 1 cut(s) 631
KspAI GTTAAC 1 cut(s) 850
Kzo9I GATC 7 cut(s) 139, 145, 271, 296, 322, 631, 1094
LguI GCTCTTC 1 cut(s) 383
LmnI GCTCC 4 cut(s) 94, 364, 373, 1150
LweI GCATC 2 cut(s) 292, 471
MaeI CTAG 1 cut(s) 581
MaeII ACGT 2 cut(s) 333, 883
MaeIII GTNAC 7 cut(s) 85, 127, 233, 239, 640, 670, 707
MalI GATC 7 cut(s) 141, 147, 273, 298, 324, 633, 1096
MboI GATC 7 cut(s) 139, 145, 271, 296, 322, 631, 1094
MboII GAAGA 5 cut(s) 58, 370, 605, 767, 887
MfeI CAATTG 2 cut(s) 1059, 1072
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 6 cut(s) 507, 600, 699, 715, 1059, 1072
MlyI GAGTC 1 cut(s) 787
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 3 cut(s) 510, 849, 948
MspA1I CMGCKG 2 cut(s) 181, 262
MspI CCGG 3 cut(s) 80, 528, 786
MspR9I CCNGG 3 cut(s) 80, 528, 787
MunI CAATTG 2 cut(s) 1059, 1072
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 2 cut(s) 221, 1143
NciI CCSGG 3 cut(s) 80, 528, 787
NcoI CCATGG 2 cut(s) 396, 439
NdeII GATC 7 cut(s) 139, 145, 271, 296, 322, 631, 1094
NlaIII CATG 4 cut(s) 361, 400, 428, 443
NlaIV GGNNCC 3 cut(s) 58, 77, 248
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 3 cut(s) 127, 640, 707
NspI RCATGY 1 cut(s) 428
NspV TTCGAA 1 cut(s) 604
PaeR7I CTCGAG 2 cut(s) 20, 185
PciSI GCTCTTC 1 cut(s) 383
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 5 cut(s) 16, 70, 444, 498, 962
PflMI CCANNNNNTGG 1 cut(s) 334
PleI GAGTC 1 cut(s) 786
PpsI GAGTC 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 378
PspEI GGTNACC 1 cut(s) 707
PspFI CCCAGC 3 cut(s) 29, 585, 997
PspN4I GGNNCC 3 cut(s) 58, 77, 248
PspPI GGNCC 3 cut(s) 57, 167, 573
PspXI VCTCGAGB 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 3 cut(s) 218, 723, 913
RsaNI GTAC 3 cut(s) 217, 722, 912
SacI GAGCTC 1 cut(s) 378
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 510, 849, 948
Sau3AI GATC 7 cut(s) 139, 145, 271, 296, 322, 631, 1094
Sau96I GGNCC 3 cut(s) 57, 167, 573
SchI GAGTC 1 cut(s) 787
ScrFI CCNGG 3 cut(s) 80, 528, 787
SduI GDGCHC 1 cut(s) 378
SfaNI GCATC 2 cut(s) 292, 471
SfcI CTRYAG 1 cut(s) 197
Sfr274I CTCGAG 2 cut(s) 20, 185
SfuI TTCGAA 1 cut(s) 604
SinI GGWCC 2 cut(s) 57, 573
SlaI CTCGAG 2 cut(s) 20, 185
SmlI CTYRAG 3 cut(s) 20, 185, 936
SmoI CTYRAG 3 cut(s) 20, 185, 936
Sse9I AATT 6 cut(s) 507, 600, 699, 715, 1059, 1072
SsiI CCGC 8 cut(s) 60, 107, 181, 191, 231, 318, 401, 471
SspI AATATT 1 cut(s) 919
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 3 cut(s) 78, 526, 785
StyI CCWWGG 2 cut(s) 396, 439
TaaI ACNGT 7 cut(s) 52, 239, 257, 452, 515, 613, 911
TaiI ACGT 2 cut(s) 336, 886
TaqI TCGA 5 cut(s) 21, 186, 270, 604, 741
TasI AATT 6 cut(s) 507, 600, 699, 715, 1059, 1072
TatI WGTACW 2 cut(s) 721, 911
TauI GCSGC 3 cut(s) 110, 184, 194
TfiI GAWTC 5 cut(s) 16, 70, 444, 498, 962
Tru1I TTAA 3 cut(s) 510, 849, 948
Tru9I TTAA 3 cut(s) 510, 849, 948
TscAI CASTG 4 cut(s) 12, 480, 649, 754
TseFI GTSAC 3 cut(s) 127, 640, 707
Tsp45I GTSAC 3 cut(s) 127, 640, 707
TspDTI ATGAA 4 cut(s) 326, 578, 768, 894
TspGWI ACGGA 2 cut(s) 107, 716
TspRI CASTG 4 cut(s) 12, 480, 649, 754
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 57, 573
XapI RAATTY 3 cut(s) 600, 699, 715
XceI RCATGY 1 cut(s) 428
XhoI CTCGAG 2 cut(s) 20, 185
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.