Rw7G007660

Polyadenylate-binding protein-interacting protein 11-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
6972775 .. 6977074
4300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007660.1

Sequence Viewer

Length: 1170 bp
ATGGCAGTGGTTGAGAATCTCGAGAATGCTGGGGTGGAGTTGGGGAAGACTGTGGGGTCCGCCTCAGGGAATCGGAACCCGGAGGTTACGACGGAGCAGCCATCGGCGGCTGCTGCTGGTGTTGCCGTGACATCCAACGATCAGGATCAGTCCTCGGCCAAGCACGGGCCTTTACGGCAGCGGCTCGAGGCGGCTCTACAGCAGCAGCAGCAGCAGCAGTACGCGATGGTAAACGGTAACGGTAACGGGAACCAGAACGGTCAGCTGAGCTTCGATCAGGTGGTGCATCACCAGCAGCGATCTAACGGCGAGATGAACGGCGGGGATCACCACAACGCGGGGGACAGCTTCAATCGGGACATGAGGGAGCTGAGGGAGCTCTTCTCTAAGCTCAACCCCATGGCGGAGGAGTTTGTGCCTCCCTCACATGCTAACAACAACCATGGAATCAACGGTGGGTTTGTTGACTTCACCGCACTGATGATGCAGAATGGAAACAGAATCGGACAAATTAACGGTGGTGGTTTTCCCGGCCGACGAAGGAATAATCAAGGAAAGAGGAGAATGAACAGCAGGACCAGTCTAGCCCAGCGAGAAGATAGAATTCGAAGGACTGTGTATGTGTCTGACATTGATCAACAGGTCACTGAGGAACAGCTCGCAGCGCTATTCGTTACTTGTGGGCAGGTTGTTGACTGCCGAATTTGTGGTGACCCAAATTCTGTACTCCGTTTTGCCTTTATCGAGTTCACAGATGAAGAAGGTGCAAGGGCTGCTTTGAGTCTTGCCGGGACAATGCTTGGGTTCTACCCTGTGAGGGTGTTGCCTTCTAAGACAGCTATTGCACCTGTTAACCCAACATTCTTGCCTCGGACTGAAGATGAACGTGAGATGTGTGCAAGAACGATATACTGTACAAATATTGACAAGAAGGTTTCTCAAGCTGATGTTAAGCTCTTTTTTGAATCAGTTTGTGGAGAGGTTTATCGTCTGAGGCTGCTGGGAGACTATCACCACTCCACTCGTATTGCATTTGTTGAGTTTGTGATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGTGTGGTTTTGGGATCATTGCCAATCAGGGTAAGTCCATCCAAGACACCTGTTCGCCCACGCGCTCCTCGCCTTCCCATACATTGA

Protein Analysis

389

Amino Acids

42.71

Weight (kDa)

7.15

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAM2 PF07145 127 - 143 8.3e-06 Ataxin-2 C-terminal region
RRM_1 PF00076 206 - 268 2.5e-12 RNA recognition motif
RRM_1 PF00076 303 - 370 3e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 676
AccII CGCG 3 cut(s) 224, 338, 1146
AciI CCGC 8 cut(s) 60, 107, 181, 191, 321, 338, 404, 474
AclWI GGATC 3 cut(s) 153, 333, 1105
AcoI YGGCCR 2 cut(s) 156, 532
AcsI RAATTY 3 cut(s) 603, 702, 718
AcuI CTGAAG 1 cut(s) 897
AfaI GTAC 3 cut(s) 221, 726, 916
AfeI AGCGCT 1 cut(s) 666
AfiI CCNNNNNNNGG 5 cut(s) 66, 165, 337, 403, 817
AgsI TTSAA 2 cut(s) 352, 965
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 999
AlwI GGATC 3 cut(s) 153, 333, 1105
Ama87I CYCGRG 2 cut(s) 20, 185
Aor51HI AGCGCT 1 cut(s) 666
AoxI GGCC 3 cut(s) 156, 167, 532
ApoI RAATTY 3 cut(s) 603, 702, 718
AspLEI GCGC 2 cut(s) 667, 1148
AspS9I GGNCC 3 cut(s) 57, 167, 576
AsuC2I CCSGG 3 cut(s) 80, 531, 790
AsuHPI GGTGA 5 cut(s) 281, 320, 463, 722, 1004
AsuII TTCGAA 1 cut(s) 607
AvaI CYCGRG 2 cut(s) 20, 185
AvaII GGWCC 2 cut(s) 57, 576
AxyI CCTNAGG 1 cut(s) 64
BanII GRGCYC 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 381
BbvCI CCTCAGC 1 cut(s) 371
BccI CCATC 4 cut(s) 109, 220, 1042, 1129
BceAI ACGGC 4 cut(s) 110, 191, 322, 334
BclI TGATCA 1 cut(s) 634
BcnI CCSGG 3 cut(s) 80, 531, 790
BcoDI GTCTC 1 cut(s) 999
BfaI CTAG 1 cut(s) 584
BfmI CTRYAG 2 cut(s) 197, 1078
BfoI RGCGCY 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 676
BglI GCCNNNNNGGC 1 cut(s) 175
BlpI GCTNAGC 1 cut(s) 266
Bme1390I CCNGG 3 cut(s) 80, 531, 790
Bme18I GGWCC 2 cut(s) 57, 576
BmeT110I CYCGRG 2 cut(s) 20, 185
BmgT120I GGNCC 3 cut(s) 57, 167, 576
BmiI GGNNCC 3 cut(s) 58, 77, 251
BmrFI CCNGG 3 cut(s) 80, 531, 790
BmsI GCATC 2 cut(s) 295, 474
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 368, 400
Bpu10I CCTNAGC 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 266
Bpu14I TTCGAA 1 cut(s) 607
BpuEI CTTGAG 1 cut(s) 924
BpuMI CCSGG 3 cut(s) 80, 531, 790
BsaBI GATNNNNATC 1 cut(s) 144
BsaJI CCNNGG 4 cut(s) 153, 399, 442, 869
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 165, 337, 403, 817
Bse1I ACTGG 1 cut(s) 579
Bse21I CCTNAGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 1100
Bse8I GATNNNNATC 1 cut(s) 144
BseDI CCNNGG 4 cut(s) 153, 399, 442, 869
BseGI GGATG 2 cut(s) 131, 1121
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 5 cut(s) 66, 165, 337, 403, 817
BseMI GCAATG 1 cut(s) 1100
BseMII CTCAG 5 cut(s) 78, 257, 362, 639, 983
BseNI ACTGG 1 cut(s) 579
BseRI GAGGAG 3 cut(s) 422, 574, 1140
BseX3I CGGCCG 1 cut(s) 532
BseYI CCCAGC 3 cut(s) 29, 588, 1000
Bsh1236I CGCG 3 cut(s) 224, 338, 1146
Bsh1285I CGRYCG 1 cut(s) 535
BshFI GGCC 3 cut(s) 158, 169, 534
BsiEI CGRYCG 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 2 cut(s) 20, 185
BsiSI CCGG 3 cut(s) 80, 531, 789
BslFI GGGAC 3 cut(s) 356, 371, 805
BslI CCNNNNNNNGG 5 cut(s) 66, 165, 337, 403, 817
BsmAI GTCTC 1 cut(s) 999
BsmFI GGGAC 3 cut(s) 356, 371, 805
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 158, 169, 534
BsoBI CYCGRG 2 cut(s) 20, 185
Bsp119I TTCGAA 1 cut(s) 607
Bsp1286I GDGCHC 1 cut(s) 381
Bsp1407I TGTACA 1 cut(s) 914
Bsp143I GATC 7 cut(s) 139, 145, 274, 299, 325, 634, 1097
Bsp1720I GCTNAGC 1 cut(s) 266
Bsp19I CCATGG 2 cut(s) 399, 442
BspACI CCGC 8 cut(s) 60, 107, 181, 191, 321, 338, 404, 474
BspANI GGCC 3 cut(s) 158, 169, 534
BspCNI CTCAG 5 cut(s) 77, 258, 363, 640, 984
BspFNI CGCG 3 cut(s) 224, 338, 1146
BspLI GGNNCC 3 cut(s) 58, 77, 251
BspMI ACCTGC 1 cut(s) 676
BspPI GGATC 3 cut(s) 153, 333, 1105
BspQI GCTCTTC 1 cut(s) 386
BspT104I TTCGAA 1 cut(s) 607
BsrDI GCAATG 1 cut(s) 1100
BsrGI TGTACA 1 cut(s) 914
BsrI ACTGG 1 cut(s) 579
BssECI CCNNGG 4 cut(s) 153, 399, 442, 869
BssMI GATC 7 cut(s) 139, 145, 274, 299, 325, 634, 1097
BssT1I CCWWGG 2 cut(s) 399, 442
Bst4CI ACNGT 9 cut(s) 52, 236, 242, 260, 455, 518, 616, 914, 1079
Bst6I CTCTTC 1 cut(s) 386
BstAPI GCANNNNNTGC 2 cut(s) 773, 1067
BstAUI TGTACA 1 cut(s) 914
BstBI TTCGAA 1 cut(s) 607
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 7 cut(s) 64, 266, 371, 387, 648, 831, 992
BstDSI CCRYGG 2 cut(s) 399, 442
BstEII GGTNACC 1 cut(s) 710
BstF5I GGATG 2 cut(s) 131, 1121
BstFNI CGCG 3 cut(s) 224, 338, 1146
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 2 cut(s) 667, 1148
BstKTI GATC 7 cut(s) 142, 148, 277, 302, 328, 637, 1100
BstMAI GTCTC 1 cut(s) 999
BstMBI GATC 7 cut(s) 139, 145, 274, 299, 325, 634, 1097
BstMCI CGRYCG 1 cut(s) 535
BstNSI RCATGY 1 cut(s) 431
BstPI GGTNACC 1 cut(s) 710
BstSCI CCNGG 3 cut(s) 78, 529, 788
BstSFI CTRYAG 2 cut(s) 197, 1078
BstUI CGCG 3 cut(s) 224, 338, 1146
BstV2I GAAGAC 1 cut(s) 53
BstZI CGGCCG 1 cut(s) 532
Bsu36I CCTNAGG 1 cut(s) 64
BsuRI GGCC 3 cut(s) 158, 169, 534
BtgI CCRYGG 2 cut(s) 399, 442
BtgZI GCGATG 1 cut(s) 239
BtsCI GGATG 2 cut(s) 131, 1121
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 3 cut(s) 12, 476, 645
BveI ACCTGC 1 cut(s) 676
Cac8I GCNNGC 1 cut(s) 660
CfoI GCGC 2 cut(s) 667, 1148
Cfr13I GGNCC 3 cut(s) 57, 167, 576
Csp6I GTAC 3 cut(s) 220, 725, 915
CspCI CAANNNNNGTGG 4 cut(s) 1009, 1044, 1063, 1098
CviAII CATG 4 cut(s) 361, 400, 428, 443
CviQI GTAC 3 cut(s) 220, 725, 915
DdeI CTNAG 7 cut(s) 64, 266, 371, 387, 648, 831, 992
DpnI GATC 7 cut(s) 141, 147, 276, 301, 327, 636, 1099
DpnII GATC 7 cut(s) 139, 145, 274, 299, 325, 634, 1097
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 2 cut(s) 156, 532
EagI CGGCCG 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
EciI GGCGGA 2 cut(s) 49, 419
Ecl136II GAGCTC 1 cut(s) 379
EclXI CGGCCG 1 cut(s) 532
Eco130I CCWWGG 2 cut(s) 399, 442
Eco24I GRGCYC 1 cut(s) 381
Eco47I GGWCC 2 cut(s) 57, 576
Eco47III AGCGCT 1 cut(s) 666
Eco52I CGGCCG 1 cut(s) 532
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 897
Eco81I CCTNAGG 1 cut(s) 64
Eco88I CYCGRG 2 cut(s) 20, 185
Eco91I GGTNACC 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 710
EcoRI GAATTC 1 cut(s) 603
EcoT14I CCWWGG 2 cut(s) 399, 442
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 2 cut(s) 399, 442
FaeI CATG 4 cut(s) 364, 403, 431, 446
FaiI YATR 7 cut(s) 362, 401, 429, 444, 621, 910, 1163
FalI AAGNNNNNCTT 2 cut(s) 760, 792
FaqI GGGAC 3 cut(s) 356, 371, 805
FatI CATG 4 cut(s) 360, 399, 427, 442
FauI CCCGC 2 cut(s) 314, 331
FbaI TGATCA 1 cut(s) 634
FokI GGATG 2 cut(s) 118, 1108
FriOI GRGCYC 1 cut(s) 381
FspBI CTAG 1 cut(s) 584
GlaI GCGC 2 cut(s) 666, 1147
GsaI CCCAGC 3 cut(s) 33, 592, 1004
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 3 cut(s) 158, 169, 534
HapII CCGG 3 cut(s) 80, 531, 789
HhaI GCGC 2 cut(s) 667, 1148
Hin1II CATG 4 cut(s) 364, 403, 431, 446
Hin6I GCGC 2 cut(s) 665, 1146
HinP1I GCGC 2 cut(s) 665, 1146
HincII GTYRAC 3 cut(s) 466, 694, 853
HindII GTYRAC 3 cut(s) 466, 694, 853
HinfI GANTC 6 cut(s) 16, 70, 447, 501, 781, 965
HpaI GTTAAC 1 cut(s) 853
HpaII CCGG 3 cut(s) 80, 531, 789
HphI GGTGA 5 cut(s) 281, 320, 463, 722, 1004
Hpy166II GTNNAC 5 cut(s) 232, 466, 694, 750, 853
Hpy188I TCNGA 5 cut(s) 75, 506, 628, 873, 993
Hpy188III TCNNGA 4 cut(s) 20, 22, 143, 356
Hpy8I GTNNAC 5 cut(s) 232, 466, 694, 750, 853
Hpy99I CGWCG 2 cut(s) 94, 540
HpyAV CCTTC 6 cut(s) 534, 603, 755, 837, 925, 1166
HpyCH4III ACNGT 9 cut(s) 52, 236, 242, 260, 455, 518, 616, 914, 1079
HpyCH4IV ACGT 1 cut(s) 886
HpyCH4V TGCA 7 cut(s) 286, 487, 767, 845, 899, 1031, 1061
HpyF3I CTNAG 7 cut(s) 64, 266, 371, 387, 648, 831, 992
HpySE526I ACGT 1 cut(s) 886
Hsp92II CATG 4 cut(s) 364, 403, 431, 446
HspAI GCGC 2 cut(s) 665, 1146
Ksp22I TGATCA 1 cut(s) 634
KspAI GTTAAC 1 cut(s) 853
Kzo9I GATC 7 cut(s) 139, 145, 274, 299, 325, 634, 1097
LguI GCTCTTC 1 cut(s) 386
LmnI GCTCC 4 cut(s) 94, 367, 376, 1153
LweI GCATC 2 cut(s) 295, 474
MaeI CTAG 1 cut(s) 584
MaeII ACGT 1 cut(s) 886
MaeIII GTNAC 7 cut(s) 85, 127, 236, 242, 643, 673, 710
MalI GATC 7 cut(s) 141, 147, 276, 301, 327, 636, 1099
MboI GATC 7 cut(s) 139, 145, 274, 299, 325, 634, 1097
MboII GAAGA 5 cut(s) 58, 373, 608, 770, 890
MfeI CAATTG 1 cut(s) 1062
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 5 cut(s) 510, 603, 702, 718, 1062
MlyI GAGTC 1 cut(s) 790
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 3 cut(s) 513, 852, 951
MspA1I CMGCKG 2 cut(s) 181, 265
MspI CCGG 3 cut(s) 80, 531, 789
MspR9I CCNGG 3 cut(s) 80, 531, 790
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 3 cut(s) 224, 338, 1146
NciI CCSGG 3 cut(s) 80, 531, 790
NcoI CCATGG 2 cut(s) 399, 442
NdeII GATC 7 cut(s) 139, 145, 274, 299, 325, 634, 1097
NlaIII CATG 4 cut(s) 364, 403, 431, 446
NlaIV GGNNCC 3 cut(s) 58, 77, 251
NmeAIII GCCGAG 1 cut(s) 134
NmuCI GTSAC 3 cut(s) 127, 643, 710
NspI RCATGY 1 cut(s) 431
NspV TTCGAA 1 cut(s) 607
PaeR7I CTCGAG 2 cut(s) 20, 185
PciSI GCTCTTC 1 cut(s) 386
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 5 cut(s) 16, 70, 447, 501, 965
PleI GAGTC 1 cut(s) 789
PpsI GAGTC 1 cut(s) 789
Psp124BI GAGCTC 1 cut(s) 381
PspEI GGTNACC 1 cut(s) 710
PspFI CCCAGC 3 cut(s) 29, 588, 1000
PspN4I GGNNCC 3 cut(s) 58, 77, 251
PspPI GGNCC 3 cut(s) 57, 167, 576
PspXI VCTCGAGB 1 cut(s) 185
PvuII CAGCTG 1 cut(s) 265
RsaI GTAC 3 cut(s) 221, 726, 916
RsaNI GTAC 3 cut(s) 220, 725, 915
SacI GAGCTC 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 513, 852, 951
Sau3AI GATC 7 cut(s) 139, 145, 274, 299, 325, 634, 1097
Sau96I GGNCC 3 cut(s) 57, 167, 576
SchI GAGTC 1 cut(s) 790
ScrFI CCNGG 3 cut(s) 80, 531, 790
SduI GDGCHC 1 cut(s) 381
SfaNI GCATC 2 cut(s) 295, 474
SfcI CTRYAG 2 cut(s) 197, 1078
Sfr274I CTCGAG 2 cut(s) 20, 185
SfuI TTCGAA 1 cut(s) 607
SinI GGWCC 2 cut(s) 57, 576
SlaI CTCGAG 2 cut(s) 20, 185
SmlI CTYRAG 3 cut(s) 20, 185, 939
SmoI CTYRAG 3 cut(s) 20, 185, 939
Sse9I AATT 5 cut(s) 510, 603, 702, 718, 1062
SsiI CCGC 8 cut(s) 60, 107, 181, 191, 321, 338, 404, 474
SspI AATATT 1 cut(s) 922
SspMI CTAG 1 cut(s) 584
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 78, 529, 788
StyI CCWWGG 2 cut(s) 399, 442
TaaI ACNGT 9 cut(s) 52, 236, 242, 260, 455, 518, 616, 914, 1079
TaiI ACGT 1 cut(s) 889
TaqI TCGA 5 cut(s) 21, 186, 273, 607, 744
TasI AATT 5 cut(s) 510, 603, 702, 718, 1062
TatI WGTACW 2 cut(s) 724, 914
TauI GCSGC 3 cut(s) 110, 184, 194
TfiI GAWTC 5 cut(s) 16, 70, 447, 501, 965
Tru1I TTAA 3 cut(s) 513, 852, 951
Tru9I TTAA 3 cut(s) 513, 852, 951
TscAI CASTG 3 cut(s) 12, 483, 652
TseFI GTSAC 3 cut(s) 127, 643, 710
Tsp45I GTSAC 3 cut(s) 127, 643, 710
TspDTI ATGAA 4 cut(s) 329, 581, 771, 897
TspGWI ACGGA 2 cut(s) 107, 719
TspRI CASTG 3 cut(s) 12, 483, 652
VpaK11BI GGWCC 2 cut(s) 57, 576
XapI RAATTY 3 cut(s) 603, 702, 718
XceI RCATGY 1 cut(s) 431
XhoI CTCGAG 2 cut(s) 20, 185
XspI CTAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.