Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

23524050 .. 23528339

Gene Structure 4290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32841.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTGTTGCTGAGAATGCACCCAGTTTTGATAACTCATCGGAGTCCAATGCTCACAACGATCTTGAAAACCCAAAACCCAAAATGGACTCGTCTGCTGTGGTGAGTGTGGACCCCAATTTACAGTCCAACGGTGGTGACGGTGGTGATCAGAGTCCTGAGCTGGATGAGAGGCAGGAGGAGGAGGAGGAGGGTTTGACAGTGCCCAAAAGCAACCACAAGGCTCAAATGGGCCAGATGCAAAATGGGTTCGAGTCCAATGGGGTGGCTGATGAGCATCAGATGGTCAAGTCTGGTGGGTATGGGACTGATCAGAGCTCTAATGGGCATGAGAATTTCAAGAAGGATATGAGGGATTTGGAGGAGTTGTTGTCCAAGTTGAATCCCATGGCTCAGGAATTCATACCTCTGAGCCTTGCCAACAACAACCAGGGCTTTGCTCTTCCTGGTGGATTTGGCTATACTAACAATCTGTTGCTGCAAACCAATTCCGGCAATGGGAATGGATTCATGGGCAAAAGGCAGAAGAAGAATGGCTATAGTAATCAAGCCAGGAGAAGGAACTATTACAAACTGAGTTTGGCACAGCGAGAGGAGATGATTAGGAGGACTGTATATGTTTCTGACATTGACCAACAGGTCACTGAAGAGAACCTAGCTGCTCTGTTTATTAATTGCGGACAGGTCGTAGACTGTCGTGTGTGCGGTGATCCTAATTCTGTTCTTCGATTTGCCTTTATTGAGTTTACAGATGAAGAAGGTGCAATGGCTGCTTTGAGTCTGTCAGGAACCATGCTTGGCTATTATCCTGTAAGAGTGCTGCCTTCCAAAACTGCAATTGCACCTGTTAACCCAACATTTTTACCCAGGTCGGATGATGAACGTGAGATGTGCTCAAGAACTATTTATTGTACCAATATTGACAAGAAGGTTACTCAAGCAGATGTCAAAATGTTTTTCGAATCACTCTGTGGAGAGGTTCAACGCCTGAGGCTCCTTGGAGACTATCATCATTCCACTCGCATTTGTTTTGTTGAGTTCACAGTGGCTGAAAGTGCAATTGCAGCTCTTAATTGTAGTGGTGTAGTTTTGGGATCATTGCCTATAAGGGTCAGCCCGTCAAAGACACCTGTGCGCCCCCGTGCTCCTCTTCGCTCTCCATCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

390

Amino Acids

42.83

Weight (kDa)

5.19

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	205 - 267	8.7e-12	RNA recognition motif
RRM_1	PF00076	302 - 369	2.1e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	638
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	2 cut(s)	678, 705
AclWI	GGATC	2 cut(s)	704, 1102
AcsI	RAATTY	2 cut(s)	334, 398
AcuI	CTGAAG	1 cut(s)	666
AdeI	CACNNNGTG	1 cut(s)	971
AfaI	GTAC	1 cut(s)	913
AfiI	CCNNNNNNNGG	2 cut(s)	498, 558
AgsI	TTSAA	4 cut(s)	68, 340, 382, 983
AjnI	CCWGG	4 cut(s)	429, 445, 551, 866
AluBI	AGCT	4 cut(s)	163, 318, 659, 1067
AluI	AGCT	4 cut(s)	163, 318, 659, 1067
Alw21I	GWGCWC	3 cut(s)	320, 896, 1147
Alw26I	GTCTC	1 cut(s)	996
AlwI	GGATC	2 cut(s)	704, 1102
AlwNI	CAGNNNCTG	1 cut(s)	1049
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	5 cut(s)	478, 659, 770, 820, 1064
ApoI	RAATTY	2 cut(s)	334, 398
AseI	ATTAAT	1 cut(s)	672
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	1137
AspS9I	GGNCC	2 cut(s)	112, 232
AsuHPI	GGTGA	4 cut(s)	115, 149, 158, 719
AsuII	TTCGAA	1 cut(s)	960
AvaII	GGWCC	1 cut(s)	112
AxyI	CCTNAGG	1 cut(s)	989
BaeGI	GKGCMC	1 cut(s)	207
BanII	GRGCYC	1 cut(s)	320
Bbv12I	GWGCWC	3 cut(s)	320, 896, 1147
BbvI	GCAGC	5 cut(s)	465, 646, 757, 807, 1076
BccI	CCATC	2 cut(s)	277, 1168
BciT130I	CCWGG	4 cut(s)	431, 447, 553, 868
BclI	TGATCA	2 cut(s)	148, 310
BcoDI	GTCTC	1 cut(s)	996
BfaI	CTAG	1 cut(s)	656
BfmI	CTRYAG	1 cut(s)	538
BisI	GCNGC	5 cut(s)	479, 660, 771, 821, 1065
BlsI	GCNGC	5 cut(s)	480, 661, 772, 822, 1066
Bme1390I	CCNGG	4 cut(s)	431, 447, 553, 868
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	112, 232
BmiI	GGNNCC	3 cut(s)	114, 790, 995
BmrFI	CCNGG	4 cut(s)	431, 447, 553, 868
BmrI	ACTGGG	1 cut(s)	18
BmsI	GCATC	2 cut(s)	228, 286
BmuI	ACTGGG	1 cut(s)	18
BplI	GAGNNNNNCTC	2 cut(s)	878, 910
Bpu10I	CCTNAGC	2 cut(s)	159, 393
Bpu14I	TTCGAA	1 cut(s)	960
BpuEI	CTTGAG	2 cut(s)	880, 921
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	4 cut(s)	387, 430, 866, 997
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 356, 383, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 558
Bse1I	ACTGG	1 cut(s)	24
Bse21I	CCTNAGG	1 cut(s)	989
Bse3DI	GCAATG	3 cut(s)	502, 771, 1097
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	4 cut(s)	431, 447, 553, 868
BseDI	CCNNGG	4 cut(s)	387, 430, 866, 997
BseGI	GGATG	2 cut(s)	172, 880
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	2 cut(s)	498, 558
BseMI	GCAATG	3 cut(s)	502, 771, 1097
BseMII	CTCAG	5 cut(s)	150, 401, 407, 566, 980
BseNI	ACTGG	1 cut(s)	24
BseRI	GAGGAG	7 cut(s)	194, 197, 200, 203, 377, 608, 1137
BseSI	GKGCMC	1 cut(s)	207
BseXI	GCAGC	5 cut(s)	465, 646, 757, 807, 1076
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	3 cut(s)	320, 896, 1147
BsiSI	CCGG	1 cut(s)	492
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	2 cut(s)	498, 558
BsmAI	GTCTC	1 cut(s)	996
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	234
Bsp119I	TTCGAA	1 cut(s)	960
Bsp1286I	GDGCHC	4 cut(s)	207, 320, 896, 1147
Bsp143I	GATC	5 cut(s)	61, 148, 310, 709, 1094
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	2 cut(s)	678, 705
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	6 cut(s)	4, 151, 402, 406, 567, 981
BspLI	GGNNCC	3 cut(s)	114, 790, 995
BspPI	GGATC	2 cut(s)	704, 1102
BspQI	GCTCTTC	1 cut(s)	447
BspT104I	TTCGAA	1 cut(s)	960
BsrDI	GCAATG	3 cut(s)	502, 771, 1097
BsrI	ACTGG	1 cut(s)	24
BssECI	CCNNGG	4 cut(s)	387, 430, 866, 997
BssMI	GATC	5 cut(s)	61, 148, 310, 709, 1094
BssT1I	CCWWGG	2 cut(s)	387, 997
Bst2UI	CCWGG	4 cut(s)	431, 447, 553, 868
Bst4CI	ACNGT	8 cut(s)	126, 134, 143, 202, 613, 695, 1045, 1167
Bst6I	CTCTTC	3 cut(s)	447, 642, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstBI	TTCGAA	1 cut(s)	960
BstDEI	CTNAG	6 cut(s)	12, 159, 393, 410, 575, 989
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	2 cut(s)	172, 880
BstHHI	GCGC	1 cut(s)	1137
BstKTI	GATC	5 cut(s)	64, 151, 313, 712, 1097
BstMAI	GTCTC	1 cut(s)	996
BstMBI	GATC	5 cut(s)	61, 148, 310, 709, 1094
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 770, 1055, 1064
BstNI	CCWGG	4 cut(s)	431, 447, 553, 868
BstSCI	CCNGG	4 cut(s)	429, 445, 551, 866
BstSFI	CTRYAG	1 cut(s)	538
BstSLI	GKGCMC	1 cut(s)	207
BstV1I	GCAGC	5 cut(s)	465, 646, 757, 807, 1076
BstXI	CCANNNNNNTGG	1 cut(s)	265
Bsu36I	CCTNAGG	1 cut(s)	989
BsuRI	GGCC	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	172, 880
BtsIMutI	CAGTG	3 cut(s)	207, 642, 1050
CaiI	CAGNNNCTG	1 cut(s)	1049
CfoI	GCGC	1 cut(s)	1137
Cfr13I	GGNCC	2 cut(s)	112, 232
Csp6I	GTAC	1 cut(s)	912
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	4 cut(s)	329, 388, 511, 793
CviQI	GTAC	1 cut(s)	912
DdeI	CTNAG	6 cut(s)	12, 159, 393, 410, 575, 989
DpnI	GATC	5 cut(s)	63, 150, 312, 711, 1096
DpnII	GATC	5 cut(s)	61, 148, 310, 709, 1094
DraIII	CACNNNGTG	1 cut(s)	971
DrdI	GACNNNNNNGTC	1 cut(s)	638
DseDI	GACNNNNNNGTC	1 cut(s)	638
Eam1104I	CTCTTC	3 cut(s)	447, 642, 1155
EarI	CTCTTC	3 cut(s)	447, 642, 1155
Ecl136II	GAGCTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	387, 997
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	318
Eco57I	CTGAAG	1 cut(s)	666
Eco81I	CCTNAGG	1 cut(s)	989
EcoICRI	GAGCTC	1 cut(s)	318
EcoRI	GAATTC	1 cut(s)	398
EcoRII	CCWGG	4 cut(s)	429, 445, 551, 866
EcoT14I	CCWWGG	2 cut(s)	387, 997
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	2 cut(s)	387, 997
FaeI	CATG	4 cut(s)	332, 391, 514, 796
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	4 cut(s)	328, 387, 510, 792
FbaI	TGATCA	2 cut(s)	148, 310
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	5 cut(s)	479, 660, 771, 821, 1065
FokI	GGATG	2 cut(s)	179, 887
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	5 cut(s)	479, 660, 771, 821, 1065
FspBI	CTAG	1 cut(s)	656
GlaI	GCGC	1 cut(s)	1136
GluI	GCNGC	5 cut(s)	479, 660, 771, 821, 1065
HaeIII	GGCC	1 cut(s)	234
HapII	CCGG	1 cut(s)	492
HhaI	GCGC	1 cut(s)	1137
Hin1II	CATG	4 cut(s)	332, 391, 514, 796
Hin6I	GCGC	1 cut(s)	1135
HinP1I	GCGC	1 cut(s)	1135
HincII	GTYRAC	1 cut(s)	850
HindII	GTYRAC	1 cut(s)	850
HinfI	GANTC	8 cut(s)	44, 89, 154, 254, 382, 507, 778, 962
HpaI	GTTAAC	1 cut(s)	850
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	4 cut(s)	115, 149, 158, 719
Hpy166II	GTNNAC	5 cut(s)	112, 691, 747, 850, 1041
Hpy188I	TCNGA	7 cut(s)	43, 153, 282, 315, 411, 625, 874
Hpy188III	TCNNGA	6 cut(s)	65, 158, 340, 395, 786, 897
Hpy8I	GTNNAC	5 cut(s)	112, 691, 747, 850, 1041
HpyAV	CCTTC	5 cut(s)	337, 552, 752, 834, 922
HpyCH4III	ACNGT	8 cut(s)	126, 134, 143, 202, 613, 695, 1045, 1167
HpyCH4IV	ACGT	1 cut(s)	883
HpyCH4V	TGCA	8 cut(s)	20, 241, 481, 764, 836, 842, 1058, 1064
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 770, 1055, 1064
HpyF3I	CTNAG	6 cut(s)	12, 159, 393, 410, 575, 989
HpySE526I	ACGT	1 cut(s)	883
Hsp92II	CATG	4 cut(s)	332, 391, 514, 796
HspAI	GCGC	1 cut(s)	1135
Ksp22I	TGATCA	2 cut(s)	148, 310
KspAI	GTTAAC	1 cut(s)	850
Kzo9I	GATC	5 cut(s)	61, 148, 310, 709, 1094
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	2 cut(s)	999, 1150
Lsp1109I	GCAGC	5 cut(s)	465, 646, 757, 807, 1076
LweI	GCATC	2 cut(s)	228, 286
MaeI	CTAG	1 cut(s)	656
MaeII	ACGT	1 cut(s)	883
MaeIII	GTNAC	3 cut(s)	137, 640, 931
MalI	GATC	5 cut(s)	63, 150, 312, 711, 1096
MboI	GATC	5 cut(s)	61, 148, 310, 709, 1094
MboII	GAAGA	7 cut(s)	434, 538, 541, 659, 716, 767, 1142
MfeI	CAATTG	2 cut(s)	837, 1059
MhlI	GDGCHC	4 cut(s)	207, 320, 896, 1147
MluCI	AATT	9 cut(s)	118, 334, 398, 487, 673, 715, 837, 1059, 1072
MlyI	GAGTC	5 cut(s)	53, 83, 163, 263, 787
MmeI	TCCRAC	2 cut(s)	153, 852
MroXI	GAANNNNTTC	1 cut(s)	506
MseI	TTAA	3 cut(s)	672, 849, 1071
MspI	CCGG	1 cut(s)	492
MspR9I	CCNGG	4 cut(s)	431, 447, 553, 868
MunI	CAATTG	2 cut(s)	837, 1059
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	4 cut(s)	431, 447, 553, 868
MwoI	GCNNNNNNNGC	4 cut(s)	17, 770, 1055, 1064
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	5 cut(s)	61, 148, 310, 709, 1094
NlaIII	CATG	4 cut(s)	332, 391, 514, 796
NlaIV	GGNNCC	3 cut(s)	114, 790, 995
NmuCI	GTSAC	2 cut(s)	137, 640
NspV	TTCGAA	1 cut(s)	960
PciSI	GCTCTTC	1 cut(s)	447
PctI	GAATGC	1 cut(s)	22
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	3 cut(s)	382, 507, 962
PkrI	GCNGC	5 cut(s)	480, 661, 772, 822, 1066
PleI	GAGTC	5 cut(s)	52, 83, 162, 262, 786
PpsI	GAGTC	5 cut(s)	52, 83, 162, 262, 786
PshBI	ATTAAT	1 cut(s)	672
Psp124BI	GAGCTC	1 cut(s)	320
Psp6I	CCWGG	4 cut(s)	429, 445, 551, 866
PspGI	CCWGG	4 cut(s)	429, 445, 551, 866
PspN4I	GGNNCC	3 cut(s)	114, 790, 995
PspPI	GGNCC	2 cut(s)	112, 232
PstNI	CAGNNNCTG	1 cut(s)	1049
RsaI	GTAC	1 cut(s)	913
RsaNI	GTAC	1 cut(s)	912
SacI	GAGCTC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	672, 849, 1071
SatI	GCNGC	5 cut(s)	479, 660, 771, 821, 1065
Sau3AI	GATC	5 cut(s)	61, 148, 310, 709, 1094
Sau96I	GGNCC	2 cut(s)	112, 232
SchI	GAGTC	5 cut(s)	53, 83, 163, 263, 787
ScrFI	CCNGG	4 cut(s)	431, 447, 553, 868
SduI	GDGCHC	4 cut(s)	207, 320, 896, 1147
SfaNI	GCATC	2 cut(s)	228, 286
SfcI	CTRYAG	1 cut(s)	538
SfuI	TTCGAA	1 cut(s)	960
SinI	GGWCC	1 cut(s)	112
SmlI	CTYRAG	2 cut(s)	895, 936
SmoI	CTYRAG	2 cut(s)	895, 936
Sse9I	AATT	9 cut(s)	118, 334, 398, 487, 673, 715, 837, 1059, 1072
SsiI	CCGC	2 cut(s)	678, 705
SspI	AATATT	1 cut(s)	919
SspMI	CTAG	1 cut(s)	656
SstI	GAGCTC	1 cut(s)	320
StyD4I	CCNGG	4 cut(s)	429, 445, 551, 866
StyI	CCWWGG	2 cut(s)	387, 997
TaaI	ACNGT	8 cut(s)	126, 134, 143, 202, 613, 695, 1045, 1167
TaiI	ACGT	1 cut(s)	886
TaqI	TCGA	3 cut(s)	252, 727, 960
TasI	AATT	9 cut(s)	118, 334, 398, 487, 673, 715, 837, 1059, 1072
TfiI	GAWTC	3 cut(s)	382, 507, 962
Tru1I	TTAA	3 cut(s)	672, 849, 1071
Tru9I	TTAA	3 cut(s)	672, 849, 1071
TscAI	CASTG	3 cut(s)	207, 649, 1050
TseFI	GTSAC	2 cut(s)	137, 640
TseI	GCWGC	5 cut(s)	478, 659, 770, 820, 1064
Tsp45I	GTSAC	2 cut(s)	137, 640
TspDTI	ATGAA	4 cut(s)	391, 499, 768, 894
TspRI	CASTG	3 cut(s)	207, 649, 1050
VpaK11BI	GGWCC	1 cut(s)	112
VspI	ATTAAT	1 cut(s)	672
XapI	RAATTY	2 cut(s)	334, 398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	242
XmiI	GTMKAC	1 cut(s)	690
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.