Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

20861658 .. 20864703

Gene Structure 3046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g23600.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCTGTTGCTGAGAATGCACCAAATTTCGACAACACAGCAGTGTCGTCAGACTCGAATGCACAGAACGATCTCGAAAACCGAAAACCCAGAGTCGATTACTCTGTGGTCCTGAGTGCCGAGCCCAATGTACAGTCCAACGGAGACGATCAGAATCCGGAGGGGAAGTTTCTGGAGCAGGAGAAAGTGACAACTTTCTCAGTCGCCACTAACAATCACAAGGCTCAATCGGGTCAGACCCCAAATGGGGTTGATTCCAATGGGGTTGATAACCATCAGACGGCGGAGGATATGTCTGATGGCTATGTGATTGATCAGAGGTCGAATGGGGAAGGGGATGAGAAATACAAGCGTGAAATGAGAGATTTGGAGGACTTGCTGTCTAAGTTGAATCCCATGGCTAAGGAGTTTGTGCCTCCTTCCCTTGTCAACAACAATGGCGGCTTTGATTTTGCTGGTGGGTTTGGATTTACTAACGGATTTATAATGCACACTAACTCTGGCAATGCCAATGGACTAATGGGTAGGAAGAAGAAGAATGGTTATAGTCAAGGTCGGGGTAGGAACTATTACAAATTGAATTTGGCTCAGAGGGAGGAAATGATTAGGAGGACTGTATATGTATCTGACATTGACCAACAGGTTACTGAAGAGAACCTGGCTGCTCTCTTTCTTGGCTGTGGACAGGTTGTGGACTGTCGTGTCTGCGGTGATCCAAATTCAGTTCTTCGATTTGCCTTCATTGAGTTCACAGATGAAGAAGGTGCAAGGAATGCTCTAAGTCTGTCAGGAACAATGCTTGGCTACTACCCAGTAAAGGTGCTGCCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGTCTGATGATGAGCGTGAGATGTGCTCAAGGACTATTTACTGTACAAATATTGACAAGAAGATTACTCAAGCTGATGTCAAACTCTTTTTTGAAACACTTTGTGGAGAGGTTCAGCGCCTGAGGCTGCTTGGAGACTATCATCACTCCACTCGTATTGCTTTTGTTGAATTTACTGTGGCTGAAAGCGCAATTGCGGCTCTTAACTGTAGTGGTGTGGTTATGGGATCGCTCCCGATAAGGGTAAGCCCCTCAAAGACACCAGTTCGACCCCGTGCCCCTCGTTCTCCGCCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

390

Amino Acids

42.85

Weight (kDa)

5.35

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AasI	GACNNNNNNGTC	1 cut(s)	701
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	6 cut(s)	284, 441, 708, 1067, 1160, 1163
AclWI	GGATC	2 cut(s)	707, 1105
AcsI	RAATTY	4 cut(s)	25, 580, 718, 1040
AcuI	CTGAAG	1 cut(s)	669
AdeI	CACNNNGTG	1 cut(s)	974
AfaI	GTAC	2 cut(s)	132, 916
AfiI	CCNNNNNNNGG	5 cut(s)	246, 247, 280, 817, 1111
AgsI	TTSAA	5 cut(s)	391, 580, 831, 965, 1040
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	657
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	944
AluI	AGCT	1 cut(s)	944
Alw21I	GWGCWC	1 cut(s)	899
Alw26I	GTCTC	2 cut(s)	138, 999
AlwI	GGATC	2 cut(s)	707, 1105
AlwNI	CAGNNNCTG	1 cut(s)	991
Aor13HI	TCCGGA	1 cut(s)	157
ApeKI	GCWGC	3 cut(s)	662, 823, 997
ApoI	RAATTY	4 cut(s)	25, 580, 718, 1040
AspLEI	GCGC	2 cut(s)	990, 1061
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	722
AvaII	GGWCC	1 cut(s)	109
AxyI	CCTNAGG	1 cut(s)	992
BaeGI	GKGCMC	1 cut(s)	1150
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	899
BbvI	GCAGC	3 cut(s)	649, 810, 984
BccI	CCATC	2 cut(s)	282, 293
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	659
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	138, 999
BfmI	CTRYAG	1 cut(s)	1078
BfoI	RGCGCY	1 cut(s)	991
BisI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1163
BlsI	GCNGC	6 cut(s)	443, 664, 825, 999, 1069, 1164
Bme1390I	CCNGG	1 cut(s)	659
Bme18I	GGWCC	1 cut(s)	109
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	109
BmrFI	CCNGG	1 cut(s)	659
BmrI	ACTGGG	1 cut(s)	806
BmuI	ACTGGG	1 cut(s)	806
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
BpmI	CTGGAG	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	883, 924
BsaBI	GATNNNNATC	2 cut(s)	153, 273
BsaJI	CCNNGG	2 cut(s)	396, 869
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	246, 247, 280, 817, 1111
Bse1I	ACTGG	2 cut(s)	812, 1133
Bse21I	CCTNAGG	1 cut(s)	992
Bse3DI	GCAATG	1 cut(s)	511
Bse8I	GATNNNNATC	2 cut(s)	153, 273
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	2 cut(s)	396, 869
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	2 cut(s)	153, 273
BseLI	CCNNNNNNNGG	5 cut(s)	246, 247, 280, 817, 1111
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	4 cut(s)	104, 213, 602, 983
BseNI	ACTGG	2 cut(s)	812, 1133
BseSI	GKGCMC	1 cut(s)	1150
BseXI	GCAGC	3 cut(s)	649, 810, 984
BsiHKAI	GWGCWC	1 cut(s)	899
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	5 cut(s)	246, 247, 280, 817, 1111
BsmAI	GTCTC	2 cut(s)	138, 999
BsmBI	CGTCTC	1 cut(s)	138
BsmI	GAATGC	3 cut(s)	22, 64, 778
Bsp1286I	GDGCHC	3 cut(s)	126, 899, 1150
Bsp13I	TCCGGA	1 cut(s)	157
Bsp1407I	TGTACA	2 cut(s)	130, 914
Bsp143I	GATC	5 cut(s)	70, 148, 313, 712, 1097
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	6 cut(s)	284, 441, 708, 1067, 1160, 1163
BspCNI	CTCAG	5 cut(s)	4, 105, 212, 601, 984
BspEI	TCCGGA	1 cut(s)	157
BspPI	GGATC	2 cut(s)	707, 1105
BsrDI	GCAATG	1 cut(s)	511
BsrGI	TGTACA	2 cut(s)	130, 914
BsrI	ACTGG	2 cut(s)	812, 1133
BssECI	CCNNGG	2 cut(s)	396, 869
BssMI	GATC	5 cut(s)	70, 148, 313, 712, 1097
BssT1I	CCWWGG	2 cut(s)	396, 869
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	6 cut(s)	135, 616, 698, 914, 1048, 1079
Bst6I	CTCTTC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstAUI	TGTACA	2 cut(s)	130, 914
BstDEI	CTNAG	8 cut(s)	12, 113, 199, 384, 402, 588, 779, 992
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	991
BstHHI	GCGC	2 cut(s)	990, 1061
BstKTI	GATC	5 cut(s)	73, 151, 316, 715, 1100
BstMAI	GTCTC	2 cut(s)	138, 999
BstMBI	GATC	5 cut(s)	70, 148, 313, 712, 1097
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 773, 994, 1058, 1067
BstNI	CCWGG	1 cut(s)	659
BstSCI	CCNGG	1 cut(s)	657
BstSFI	CTRYAG	1 cut(s)	1078
BstSLI	GKGCMC	1 cut(s)	1150
BstV1I	GCAGC	3 cut(s)	649, 810, 984
Bsu36I	CCTNAGG	1 cut(s)	992
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	991
CfoI	GCGC	2 cut(s)	990, 1061
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	131, 915
CspCI	CAANNNNNGTGG	2 cut(s)	1009, 1044
CviAII	CATG	1 cut(s)	397
CviQI	GTAC	2 cut(s)	131, 915
DdeI	CTNAG	8 cut(s)	12, 113, 199, 384, 402, 588, 779, 992
DpnI	GATC	5 cut(s)	72, 150, 315, 714, 1099
DpnII	GATC	5 cut(s)	70, 148, 313, 712, 1097
DraIII	CACNNNGTG	1 cut(s)	974
DrdI	GACNNNNNNGTC	1 cut(s)	701
DriI	GACNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	701
Eam1104I	CTCTTC	1 cut(s)	645
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	645
EciI	GGCGGA	2 cut(s)	299, 1149
Eco130I	CCWWGG	2 cut(s)	396, 869
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	669
Eco81I	CCTNAGG	1 cut(s)	992
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	2 cut(s)	396, 869
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	396, 869
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	1 cut(s)	400
FaiI	YATR	8 cut(s)	293, 306, 398, 485, 546, 619, 621, 1094
FatI	CATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1163
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1163
GlaI	GCGC	2 cut(s)	989, 1060
GluI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1163
GsuI	CTGGAG	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	991
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	2 cut(s)	990, 1061
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	2 cut(s)	988, 1059
HinP1I	GCGC	2 cut(s)	988, 1059
HincII	GTYRAC	2 cut(s)	430, 853
HindII	GTYRAC	2 cut(s)	430, 853
HinfI	GANTC	5 cut(s)	53, 93, 154, 254, 391
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	722
Hpy166II	GTNNAC	5 cut(s)	430, 683, 694, 750, 853
Hpy188I	TCNGA	9 cut(s)	52, 153, 237, 279, 298, 318, 591, 628, 877
Hpy188III	TCNNGA	6 cut(s)	74, 112, 158, 173, 789, 1105
Hpy8I	GTNNAC	5 cut(s)	430, 683, 694, 750, 853
HpyAV	CCTTC	5 cut(s)	326, 429, 748, 755, 837
HpyCH4III	ACNGT	6 cut(s)	135, 616, 698, 914, 1048, 1079
HpyCH4V	TGCA	6 cut(s)	20, 62, 490, 767, 839, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 773, 994, 1058, 1067
HpyF3I	CTNAG	8 cut(s)	12, 113, 199, 384, 402, 588, 779, 992
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	2 cut(s)	988, 1059
Kpn2I	TCCGGA	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	5 cut(s)	70, 148, 313, 712, 1097
LmnI	GCTCC	2 cut(s)	175, 1107
Lsp1109I	GCAGC	3 cut(s)	649, 810, 984
MaeIII	GTNAC	2 cut(s)	187, 643
MalI	GATC	5 cut(s)	72, 150, 315, 714, 1099
MboI	GATC	5 cut(s)	70, 148, 313, 712, 1097
MboII	GAAGA	7 cut(s)	541, 544, 547, 662, 719, 770, 943
MfeI	CAATTG	2 cut(s)	840, 1062
MhlI	GDGCHC	3 cut(s)	126, 899, 1150
MluCI	AATT	7 cut(s)	25, 575, 580, 718, 840, 1040, 1062
MlyI	GAGTC	2 cut(s)	47, 102
MmeI	TCCRAC	1 cut(s)	162
MroI	TCCGGA	1 cut(s)	157
MseI	TTAA	2 cut(s)	852, 1074
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	659
MunI	CAATTG	2 cut(s)	840, 1062
Mva1269I	GAATGC	3 cut(s)	22, 64, 778
MvaI	CCWGG	1 cut(s)	659
MwoI	GCNNNNNNNGC	5 cut(s)	17, 773, 994, 1058, 1067
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	5 cut(s)	70, 148, 313, 712, 1097
NlaIII	CATG	1 cut(s)	400
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PctI	GAATGC	3 cut(s)	22, 64, 778
PfeI	GAWTC	3 cut(s)	154, 254, 391
PkrI	GCNGC	6 cut(s)	443, 664, 825, 999, 1069, 1164
PleI	GAGTC	2 cut(s)	47, 101
PpsI	GAGTC	2 cut(s)	47, 101
PsiI	TTATAA	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	657
PspPI	GGNCC	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	991
RsaI	GTAC	2 cut(s)	132, 916
RsaNI	GTAC	2 cut(s)	131, 915
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	852, 1074
SatI	GCNGC	6 cut(s)	442, 663, 824, 998, 1068, 1163
Sau3AI	GATC	5 cut(s)	70, 148, 313, 712, 1097
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	2 cut(s)	47, 102
ScrFI	CCNGG	1 cut(s)	659
SduI	GDGCHC	3 cut(s)	126, 899, 1150
SfcI	CTRYAG	1 cut(s)	1078
SinI	GGWCC	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	898, 939
SmoI	CTYRAG	2 cut(s)	898, 939
Sse9I	AATT	7 cut(s)	25, 575, 580, 718, 840, 1040, 1062
SsiI	CCGC	6 cut(s)	284, 441, 708, 1067, 1160, 1163
SspI	AATATT	1 cut(s)	922
StyD4I	CCNGG	1 cut(s)	657
StyI	CCWWGG	2 cut(s)	396, 869
TaaI	ACNGT	6 cut(s)	135, 616, 698, 914, 1048, 1079
TaqI	TCGA	7 cut(s)	30, 56, 75, 96, 323, 730, 1138
TasI	AATT	7 cut(s)	25, 575, 580, 718, 840, 1040, 1062
TatI	WGTACW	2 cut(s)	130, 914
TauI	GCSGC	3 cut(s)	444, 1070, 1165
TfiI	GAWTC	3 cut(s)	154, 254, 391
Tru1I	TTAA	2 cut(s)	852, 1074
Tru9I	TTAA	2 cut(s)	852, 1074
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	3 cut(s)	662, 823, 997
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	730, 771
TspGWI	ACGGA	2 cut(s)	156, 492
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	109
XapI	RAATTY	4 cut(s)	25, 580, 718, 1040
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.