Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Forward (+)

6556982 .. 6559602

Gene Structure 2621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGGTCATTGAGAGCGTCGGAGCTAATACTACTGTGGAAGCTGGTGGTTTGATCTCGCCGTCGCCGCCGTCTTCCGTCACCAGTCAAGAATCAGGAGCTTCTTCTAACAACGATCACGGTGGAAATGGAATCCATGATGAGATCGGAGTCCACGTGGCGAGATCCGACGGTGGTGAGAGTTTTAAGCGTGATATGAGAGAGCTTCACGAGCTCTTGTCTAAGCTTAATCCTATGGCTAAAGAGTTTATTCCTCCTTCACTTACTAAGCCAGTTGTTAATGGTTTTAACGGCGGTTTCTTCGCCGTTAATAATGGCTTTGTTGCTGCCGGAAATTTCCCCGTCAACGAAGACGGTAGCTTTCGTCGGAAGAAGTCGTTCGGACAACAAGGGAAACGGAGAATGAATCCTAGGACAAGTTTGGCTCAGCGTGAAGAGATCATAAGAAGAACTGTCTATGTGTCTGATATTGACCAACAGGTCACTGAGGAGCAGCTTGCTGGTTTGTTTATCGGCTTTGGACAGGTTGTTGACTGTCGTATATGTGGTGATCCCAACTCAGTACTTAGGTTTGCTTTCATCGAGTTCACTGATGAAGTGGGTGCAAGGACTGCTCTGAATTTGTCTGGGACGATGCTTGGATTCTATCCTGTGAAGGTTATGCCGTCTAAGACAGCTATTGCACCGGTTAACCCAACCTTCTTGCCAAGGACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGCACTAACATTGACAAGAAGCTCACTCAAACCGACATTAAACTCTTCTTTGAGTCTGTGTGTGGCGAGGTGTACCGTCTGAGGCTACTGGGCGATTATCATCATCCAACTCGCATCGGCTTCGTGGAGTTTGTCATGGCTGAAAGCGCGATAGCGGCTCTCAACTGCAGTGGTGTCCTTCTTGGTTCTTTACCGATAAGGGTGAGTCCATCAAAGACACCGGTTCGTTCCCGTGCTATCCCGCGACATCAAATGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

336

Amino Acids

36.78

Weight (kDa)

7.67

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	152 - 214	1.9e-11	RNA recognition motif
RRM_1	PF00076	249 - 314	3e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	479
AccII	CGCG	2 cut(s)	899, 994
AciI	CCGC	5 cut(s)	5, 68, 294, 905, 992
AclWI	GGATC	2 cut(s)	159, 545
AcsI	RAATTY	2 cut(s)	334, 619
AcuI	CTGAAG	1 cut(s)	735
AcvI	CACGTG	1 cut(s)	157
AfaI	GTAC	2 cut(s)	564, 824
AgeI	ACCGGT	2 cut(s)	685, 970
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	159, 545
ApeKI	GCWGC	2 cut(s)	326, 493
ApoI	RAATTY	2 cut(s)	334, 619
AsiGI	ACCGGT	2 cut(s)	685, 970
Asp700I	GAANNNNTTC	1 cut(s)	377
AspA2I	CCTAGG	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	899
AsuHPI	GGTGA	4 cut(s)	73, 188, 560, 964
AvrII	CCTAGG	1 cut(s)	410
BanII	GRGCYC	1 cut(s)	216
BauI	CACGAG	1 cut(s)	209
BbrPI	CACGTG	1 cut(s)	157
BbsI	GAAGAC	2 cut(s)	66, 357
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	2 cut(s)	313, 505
BccI	CCATC	1 cut(s)	967
BceAI	ACGGC	5 cut(s)	46, 55, 290, 307, 649
BcgI	CGANNNNNNTGC	2 cut(s)	853, 887
BfaI	CTAG	1 cut(s)	411
BfmI	CTRYAG	1 cut(s)	916
BisI	GCNGC	4 cut(s)	68, 327, 494, 906
BlnI	CCTAGG	1 cut(s)	410
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	4 cut(s)	69, 328, 495, 907
BmcAI	AGTACT	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	848
BmsI	GCATC	2 cut(s)	624, 873
BmuI	ACTGGG	1 cut(s)	848
BpiI	GAAGAC	2 cut(s)	66, 357
Bpu1102I	GCTNAGC	1 cut(s)	426
BsaAI	YACGTR	1 cut(s)	157
BsaBI	GATNNNNATC	1 cut(s)	849
BsaJI	CCNNGG	2 cut(s)	410, 707
BsaWI	WCCGGW	2 cut(s)	685, 970
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bse118I	RCCGGY	2 cut(s)	685, 970
Bse1I	ACTGG	3 cut(s)	84, 272, 843
Bse8I	GATNNNNATC	1 cut(s)	849
BseDI	CCNNGG	2 cut(s)	410, 707
BseGI	GGATG	1 cut(s)	853
BseJI	GATNNNNATC	1 cut(s)	849
BseMII	CTCAG	4 cut(s)	440, 477, 573, 821
BseNI	ACTGG	3 cut(s)	84, 272, 843
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	2 cut(s)	313, 505
BsgI	GTGCAG	1 cut(s)	736
Bsh1236I	CGCG	2 cut(s)	899, 994
BshTI	ACCGGT	2 cut(s)	685, 970
BsiHKAI	GWGCWC	1 cut(s)	216
BsiSI	CCGG	3 cut(s)	330, 686, 971
BslFI	GGGAC	1 cut(s)	643
BsmFI	GGGAC	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	6 cut(s)	54, 115, 144, 164, 438, 550
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	5 cut(s)	5, 68, 294, 905, 992
BspCNI	CTCAG	4 cut(s)	439, 478, 572, 822
BspFNI	CGCG	2 cut(s)	899, 994
BspMAI	CTGCAG	1 cut(s)	920
BspPI	GGATC	2 cut(s)	159, 545
BsrFI	RCCGGY	2 cut(s)	685, 970
BsrI	ACTGG	3 cut(s)	84, 272, 843
BssAI	RCCGGY	2 cut(s)	685, 970
BssECI	CCNNGG	2 cut(s)	410, 707
BssMI	GATC	6 cut(s)	54, 115, 144, 164, 438, 550
BssSI	CACGAG	1 cut(s)	209
BssT1I	CCWWGG	2 cut(s)	410, 707
Bst2BI	CACGAG	1 cut(s)	209
Bst4CI	ACNGT	7 cut(s)	37, 122, 173, 356, 454, 536, 827
Bst6I	CTCTTC	2 cut(s)	429, 800
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstBAI	YACGTR	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	8 cut(s)	222, 267, 426, 486, 559, 566, 669, 830
BstF5I	GGATG	1 cut(s)	853
BstFNI	CGCG	2 cut(s)	899, 994
BstHHI	GCGC	1 cut(s)	899
BstKTI	GATC	6 cut(s)	57, 118, 147, 167, 441, 553
BstMBI	GATC	6 cut(s)	54, 115, 144, 164, 438, 550
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 211, 611, 896, 905
BstSFI	CTRYAG	1 cut(s)	916
BstUI	CGCG	2 cut(s)	899, 994
BstV1I	GCAGC	2 cut(s)	313, 505
BstV2I	GAAGAC	2 cut(s)	66, 357
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	853
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	3 cut(s)	483, 588, 925
Cac8I	GCNNGC	1 cut(s)	498
CfoI	GCGC	1 cut(s)	899
Cfr10I	RCCGGY	2 cut(s)	685, 970
CseI	GACGC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	563, 823
CspAI	ACCGGT	2 cut(s)	685, 970
CspCI	CAANNNNNGTGG	2 cut(s)	901, 936
CviAII	CATG	2 cut(s)	137, 886
CviQI	GTAC	2 cut(s)	563, 823
DdeI	CTNAG	8 cut(s)	222, 267, 426, 486, 559, 566, 669, 830
DpnI	GATC	6 cut(s)	56, 117, 146, 166, 440, 552
DpnII	GATC	6 cut(s)	54, 115, 144, 164, 438, 550
DrdI	GACNNNNNNGTC	1 cut(s)	479
DseDI	GACNNNNNNGTC	1 cut(s)	479
Eam1104I	CTCTTC	2 cut(s)	429, 800
EarI	CTCTTC	2 cut(s)	429, 800
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	410, 707
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	735
Eco72I	CACGTG	1 cut(s)	157
EcoICRI	GAGCTC	1 cut(s)	214
EcoT14I	CCWWGG	2 cut(s)	410, 707
EcoT22I	ATGCAT	1 cut(s)	1008
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	2 cut(s)	410, 707
FaeI	CATG	2 cut(s)	140, 889
FaiI	YATR	9 cut(s)	138, 197, 236, 443, 459, 542, 544, 662, 887
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	2 cut(s)	136, 885
FauI	CCCGC	1 cut(s)	999
Fnu4HI	GCNGC	4 cut(s)	68, 327, 494, 906
FokI	GGATG	1 cut(s)	840
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	4 cut(s)	68, 327, 494, 906
FspBI	CTAG	1 cut(s)	411
GlaI	GCGC	1 cut(s)	898
GluI	GCNGC	4 cut(s)	68, 327, 494, 906
HapII	CCGG	3 cut(s)	330, 686, 971
HgaI	GACGC	1 cut(s)	7
HhaI	GCGC	1 cut(s)	899
Hin1II	CATG	2 cut(s)	140, 889
Hin6I	GCGC	1 cut(s)	897
HinP1I	GCGC	1 cut(s)	897
HincII	GTYRAC	3 cut(s)	346, 532, 691
HindII	GTYRAC	3 cut(s)	346, 532, 691
HindIII	AAGCTT	1 cut(s)	224
HinfI	GANTC	7 cut(s)	92, 132, 150, 406, 642, 803, 955
HpaI	GTTAAC	1 cut(s)	691
HpaII	CCGG	3 cut(s)	330, 686, 971
HphI	GGTGA	4 cut(s)	73, 188, 560, 964
Hpy166II	GTNNAC	6 cut(s)	154, 346, 532, 588, 691, 823
Hpy188I	TCNGA	8 cut(s)	23, 149, 169, 369, 383, 466, 618, 831
Hpy188III	TCNNGA	3 cut(s)	89, 96, 209
Hpy8I	GTNNAC	6 cut(s)	154, 346, 532, 588, 691, 823
Hpy99I	CGWCG	4 cut(s)	23, 67, 173, 369
HpyAV	CCTTC	4 cut(s)	267, 649, 709, 938
HpyCH4III	ACNGT	7 cut(s)	37, 122, 173, 356, 454, 536, 827
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	6 cut(s)	605, 683, 737, 753, 918, 1006
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 211, 611, 896, 905
HpyF3I	CTNAG	8 cut(s)	222, 267, 426, 486, 559, 566, 669, 830
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	140, 889
HspAI	GCGC	1 cut(s)	897
KspAI	GTTAAC	1 cut(s)	691
Kzo9I	GATC	6 cut(s)	54, 115, 144, 164, 438, 550
LmnI	GCTCC	3 cut(s)	23, 98, 490
Lsp1109I	GCAGC	2 cut(s)	313, 505
LweI	GCATC	2 cut(s)	624, 873
MaeI	CTAG	1 cut(s)	411
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	2 cut(s)	79, 481
MalI	GATC	6 cut(s)	56, 117, 146, 166, 440, 552
MboI	GATC	6 cut(s)	54, 115, 144, 164, 438, 550
MboII	GAAGA	9 cut(s)	66, 96, 292, 362, 382, 446, 459, 728, 787
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	2 cut(s)	334, 619
MlyI	GAGTC	3 cut(s)	159, 812, 964
MmeI	TCCRAC	3 cut(s)	192, 347, 881
MnlI	CCTC	4 cut(s)	264, 481, 811, 825
Mph1103I	ATGCAT	1 cut(s)	1008
MroXI	GAANNNNTTC	1 cut(s)	377
MseI	TTAA	8 cut(s)	186, 228, 279, 288, 309, 690, 789, 1009
MspI	CCGG	3 cut(s)	330, 686, 971
MvnI	CGCG	2 cut(s)	899, 994
MwoI	GCNNNNNNNGC	5 cut(s)	67, 211, 611, 896, 905
NdeII	GATC	6 cut(s)	54, 115, 144, 164, 438, 550
NlaIII	CATG	2 cut(s)	140, 889
NmuCI	GTSAC	2 cut(s)	79, 481
NsiI	ATGCAT	1 cut(s)	1008
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	377
PfeI	GAWTC	4 cut(s)	92, 132, 406, 642
PinAI	ACCGGT	2 cut(s)	685, 970
PkrI	GCNGC	4 cut(s)	69, 328, 495, 907
PleI	GAGTC	3 cut(s)	158, 811, 963
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
PpsI	GAGTC	3 cut(s)	158, 811, 963
Ppu21I	YACGTR	1 cut(s)	157
Psp124BI	GAGCTC	1 cut(s)	216
PspCI	CACGTG	1 cut(s)	157
PstI	CTGCAG	1 cut(s)	920
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	2 cut(s)	564, 824
RsaNI	GTAC	2 cut(s)	563, 823
SacI	GAGCTC	1 cut(s)	216
SaqAI	TTAA	8 cut(s)	186, 228, 279, 288, 309, 690, 789, 1009
SatI	GCNGC	4 cut(s)	68, 327, 494, 906
Sau3AI	GATC	6 cut(s)	54, 115, 144, 164, 438, 550
ScaI	AGTACT	1 cut(s)	564
SchI	GAGTC	3 cut(s)	159, 812, 964
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	624, 873
SfcI	CTRYAG	1 cut(s)	916
Sse9I	AATT	2 cut(s)	334, 619
SsiI	CCGC	5 cut(s)	5, 68, 294, 905, 992
SspMI	CTAG	1 cut(s)	411
SstI	GAGCTC	1 cut(s)	216
StyI	CCWWGG	2 cut(s)	410, 707
TaaI	ACNGT	7 cut(s)	37, 122, 173, 356, 454, 536, 827
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	582
TasI	AATT	2 cut(s)	334, 619
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	2 cut(s)	70, 908
TfiI	GAWTC	4 cut(s)	92, 132, 406, 642
Tru1I	TTAA	8 cut(s)	186, 228, 279, 288, 309, 690, 789, 1009
Tru9I	TTAA	8 cut(s)	186, 228, 279, 288, 309, 690, 789, 1009
TscAI	CASTG	3 cut(s)	490, 595, 925
TseFI	GTSAC	2 cut(s)	79, 481
TseI	GCWGC	2 cut(s)	326, 493
Tsp45I	GTSAC	2 cut(s)	79, 481
TspDTI	ATGAA	3 cut(s)	419, 568, 609
TspGWI	ACGGA	2 cut(s)	67, 412
TspRI	CASTG	3 cut(s)	490, 595, 925
XapI	RAATTY	2 cut(s)	334, 619
XmaJI	CCTAGG	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	377
XspI	CTAG	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	564
Zsp2I	ATGCAT	1 cut(s)	1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.