Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

53502653 .. 53504675

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0435800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGATCCACTTCCAGATTGGTCAGAGTTGCCTAATCAAATATTGGAATCAGTTTTAGAGAGACTAGATTTGCTAGCAGATTATGTGAGATTCAGTGTTGTTTGTAGATCATGGAATTTCATAGCTAAGGATAATCGAAACAAACGAGTTAAAATGCCATGTTGTCATCCCCCTCCAATGCTCTTGATTAACACCGACATTGGAGATATATGGAAGGTCTACAACGTCACGGCTGACAAGCTTCTTGATTTGCAAGTAAGAGTGCCCAATACCCGATTTTGTGGGTCTTCAAAAGGATGGTTGATATTTGTGGAGAATGATTTTACAGTAACTCTAATAAATCCGTTCTTTAGGGTTAGAGGGAGGGTAGAAAAAGAAAATTCTATCATTCATCTTCCTCCGTTGCGACTCATCAAAAACATAGATATGTCTAGAGTGAGACATGAGCGTTATGTTTGCAAGGCTACCATTTCAGCAGACCCAGTATTAAATGCAAATGAGTGCATTGTTGTTGTCATCACTGAACCGGGATTTCAGTTGGCTTTTATTAGACTTGGTAAAGATATAGCTTGGAATTATATTGATGGAAGCGCACGTGGTCGTGGATTTGAGGAAGTCATTTTTCTGGGAGGTAAGTTTTATGGTGTTCGAAATAATGGCAGACTTTTATCTTTCGAAATTACTAGGTTCAATTTCAATCTAAAATTAGCTGCACGCAGCCTTCGACGAGATCACACCATAAAGAGTTATCTTGTGTATTCAAATAAAAAAGAATTGTTGATGGTTGAAAGATACATTAGCTTTGATAGGAAGAATGACATGCGTACAACATCAAAATTCATAATTTACAAATTGAATTTTGATAAGTGTAAGTGGACCGAGAAAAACAGTTTAGGTGGTGAAACACTCTTCCTAGGTGATAACTCTTCGTTTTCGGTGTTAGCTTCAAGTTTTCCAGGATGTCTACGGAATTGCATATACTTTAATCATGATTATGATTGTTTTAAAAGTAAATTTGGGCCTCGTGGTCCTAATGATTTTGGTGTGTATGATGTGGAAGATAAAAGCTTTCTACCGGTTGACTCCACAAATGCTTCGATGCTAGTGAAGATGAGCCTTCAACCATCAATCTGGATTTTGCCAACGTTTCAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

385

Amino Acids

44.5

Weight (kDa)

9.12

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	7 - 48	4.9e-08	F-box domain
F-box-like	PF12937	7 - 45	2e-07	F-box-like
Beta-prop_KIB1-4	PF03478	74 - 351	6.6e-50	KIB1-4 beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	219, 964
AclI	AACGTT	1 cut(s)	1145
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	5 cut(s)	115, 379, 836, 856, 1013
AcvI	CACGTG	1 cut(s)	596
AfaI	GTAC	1 cut(s)	826
AgeI	ACCGGT	1 cut(s)	1075
AgsI	TTSAA	8 cut(s)	291, 691, 697, 762, 788, 856, 948, 1121
AjnI	CCWGG	1 cut(s)	955
AluBI	AGCT	8 cut(s)	125, 241, 569, 710, 801, 944, 1068, 1153
AluI	AGCT	8 cut(s)	125, 241, 569, 710, 801, 944, 1068, 1153
Alw26I	GTCTC	2 cut(s)	55, 433
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	1019
ApeKI	GCWGC	2 cut(s)	710, 717
ApoI	RAATTY	5 cut(s)	115, 379, 836, 856, 1013
AsiGI	ACCGGT	1 cut(s)	1075
AspA2I	CCTAGG	1 cut(s)	913
AspLEI	GCGC	1 cut(s)	593
AspS9I	GGNCC	3 cut(s)	876, 1019, 1028
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	2 cut(s)	911, 929
AsuII	TTCGAA	2 cut(s)	649, 675
AsuNHI	GCTAGC	1 cut(s)	73
AvaII	GGWCC	2 cut(s)	876, 1028
AvrII	CCTAGG	1 cut(s)	913
BaeGI	GKGCMC	1 cut(s)	267
BamHI	GGATCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	1023
BbrPI	CACGTG	1 cut(s)	596
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	697, 729
BccI	CCATC	4 cut(s)	291, 578, 775, 1132
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	957
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	2 cut(s)	55, 433
BfaI	CTAG	6 cut(s)	65, 74, 432, 684, 914, 1103
BisI	GCNGC	2 cut(s)	711, 718
BlnI	CCTAGG	1 cut(s)	913
BlsI	GCNGC	2 cut(s)	712, 719
Bme1390I	CCNGG	2 cut(s)	528, 957
Bme18I	GGWCC	2 cut(s)	876, 1028
BmgT120I	GGNCC	3 cut(s)	876, 1019, 1028
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	528, 957
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	1 cut(s)	1089
BmtI	GCTAGC	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	476
BpiI	GAAGAC	1 cut(s)	279
Bpu10I	CCTNAGC	1 cut(s)	126
Bpu14I	TTCGAA	2 cut(s)	649, 675
BpuMI	CCSGG	1 cut(s)	528
BsaAI	YACGTR	1 cut(s)	596
BsaJI	CCNNGG	1 cut(s)	913
BsaWI	WCCGGW	1 cut(s)	1075
Bse118I	RCCGGY	1 cut(s)	1075
Bse1I	ACTGG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	957
BseDI	CCNNGG	1 cut(s)	913
BseGI	GGATG	3 cut(s)	166, 302, 965
BseNI	ACTGG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	267
BseXI	GCAGC	2 cut(s)	697, 729
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	1 cut(s)	1021
BshTI	ACCGGT	1 cut(s)	1075
BsiSI	CCGG	2 cut(s)	527, 1076
BsmAI	GTCTC	2 cut(s)	55, 433
BsnI	GGCC	1 cut(s)	1021
Bsp119I	TTCGAA	2 cut(s)	649, 675
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	3 cut(s)	4, 107, 730
BspANI	GGCC	1 cut(s)	1021
BspHI	TCATGA	1 cut(s)	988
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	77
BspPI	GGATC	1 cut(s)	12
BspT104I	TTCGAA	2 cut(s)	649, 675
BsrFI	RCCGGY	1 cut(s)	1075
BsrI	ACTGG	1 cut(s)	482
BssAI	RCCGGY	1 cut(s)	1075
BssECI	CCNNGG	1 cut(s)	913
BssMI	GATC	3 cut(s)	4, 107, 730
BssSI	CACGAG	1 cut(s)	1023
BssT1I	CCWWGG	1 cut(s)	913
Bst2BI	CACGAG	1 cut(s)	1023
Bst2UI	CCWGG	1 cut(s)	957
Bst4CI	ACNGT	2 cut(s)	328, 890
Bst6I	CTCTTC	2 cut(s)	914, 931
BstBAI	YACGTR	1 cut(s)	596
BstBI	TTCGAA	2 cut(s)	649, 675
BstC8I	GCNNGC	2 cut(s)	75, 715
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	166, 302, 965
BstHHI	GCGC	1 cut(s)	593
BstKTI	GATC	3 cut(s)	7, 110, 733
BstMAI	GTCTC	2 cut(s)	55, 433
BstMBI	GATC	3 cut(s)	4, 107, 730
BstNI	CCWGG	1 cut(s)	957
BstNSI	RCATGY	1 cut(s)	823
BstSCI	CCNGG	2 cut(s)	526, 955
BstSLI	GKGCMC	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	697, 729
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	1131
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	1021
BtsCI	GGATG	3 cut(s)	166, 302, 965
BtsIMutI	CAGTG	2 cut(s)	100, 519
Cac8I	GCNNGC	2 cut(s)	75, 715
CciI	TCATGA	1 cut(s)	988
CfoI	GCGC	1 cut(s)	593
Cfr10I	RCCGGY	1 cut(s)	1075
Cfr13I	GGNCC	3 cut(s)	876, 1019, 1028
Csp6I	GTAC	1 cut(s)	825
CspAI	ACCGGT	1 cut(s)	1075
CviAII	CATG	5 cut(s)	111, 159, 443, 820, 989
CviQI	GTAC	1 cut(s)	825
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	3 cut(s)	6, 109, 732
DpnII	GATC	3 cut(s)	4, 107, 730
DraI	TTTAAA	1 cut(s)	1006
Eam1104I	CTCTTC	2 cut(s)	914, 931
EarI	CTCTTC	2 cut(s)	914, 931
Eco130I	CCWWGG	1 cut(s)	913
Eco47I	GGWCC	2 cut(s)	876, 1028
Eco72I	CACGTG	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	955
EcoT14I	CCWWGG	1 cut(s)	913
ErhI	CCWWGG	1 cut(s)	913
FaeI	CATG	5 cut(s)	114, 162, 446, 823, 992
FatI	CATG	5 cut(s)	110, 158, 442, 819, 988
FblI	GTMKAC	2 cut(s)	219, 964
Fnu4HI	GCNGC	2 cut(s)	711, 718
FokI	GGATG	3 cut(s)	153, 309, 972
Fsp4HI	GCNGC	2 cut(s)	711, 718
FspBI	CTAG	6 cut(s)	65, 74, 432, 684, 914, 1103
GlaI	GCGC	1 cut(s)	592
GluI	GCNGC	2 cut(s)	711, 718
HaeIII	GGCC	1 cut(s)	1021
HapII	CCGG	2 cut(s)	527, 1076
HhaI	GCGC	1 cut(s)	593
Hin1II	CATG	5 cut(s)	114, 162, 446, 823, 992
Hin6I	GCGC	1 cut(s)	591
HinP1I	GCGC	1 cut(s)	591
HincII	GTYRAC	1 cut(s)	1081
HindII	GTYRAC	1 cut(s)	1081
HindIII	AAGCTT	2 cut(s)	239, 1066
HinfI	GANTC	4 cut(s)	47, 90, 408, 1082
HpaII	CCGG	2 cut(s)	527, 1076
HphI	GGTGA	2 cut(s)	911, 929
Hpy166II	GTNNAC	4 cut(s)	220, 876, 965, 1081
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	6 cut(s)	14, 184, 245, 432, 989, 1132
Hpy8I	GTNNAC	4 cut(s)	220, 876, 965, 1081
Hpy99I	CGWCG	1 cut(s)	729
HpyAV	CCTTC	3 cut(s)	208, 731, 1127
HpyCH4III	ACNGT	2 cut(s)	328, 890
HpyCH4IV	ACGT	3 cut(s)	225, 595, 1145
HpyCH4V	TGCA	6 cut(s)	253, 459, 494, 504, 713, 975
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	3 cut(s)	225, 595, 1145
Hsp92II	CATG	5 cut(s)	114, 162, 446, 823, 992
HspAI	GCGC	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	4, 107, 730
LpnPI	CCDG	8 cut(s)	27, 495, 540, 611, 942, 969, 1089, 1117
Lsp1109I	GCAGC	2 cut(s)	697, 729
LweI	GCATC	1 cut(s)	1089
MaeI	CTAG	6 cut(s)	65, 74, 432, 684, 914, 1103
MaeII	ACGT	3 cut(s)	225, 595, 1145
MaeIII	GTNAC	2 cut(s)	226, 328
MalI	GATC	3 cut(s)	6, 109, 732
MboI	GATC	3 cut(s)	4, 107, 730
MboII	GAAGA	7 cut(s)	279, 386, 823, 901, 918, 1070, 1120
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	267
MlyI	GAGTC	2 cut(s)	402, 1076
MnlI	CCTC	7 cut(s)	183, 353, 357, 408, 604, 623, 1032
MseI	TTAA	5 cut(s)	150, 189, 488, 984, 1005
MslI	CAYNNNNRTG	2 cut(s)	425, 993
MspA1I	CMGCKG	1 cut(s)	1153
MspI	CCGG	2 cut(s)	527, 1076
MspR9I	CCNGG	2 cut(s)	528, 957
MvaI	CCWGG	1 cut(s)	957
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	3 cut(s)	4, 107, 730
NheI	GCTAGC	1 cut(s)	73
NlaIII	CATG	5 cut(s)	114, 162, 446, 823, 992
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	823
NspV	TTCGAA	2 cut(s)	649, 675
PagI	TCATGA	1 cut(s)	988
PcsI	WCGNNNNNNNCGW	2 cut(s)	142, 721
PfeI	GAWTC	2 cut(s)	47, 90
PfoI	TCCNGGA	1 cut(s)	955
PinAI	ACCGGT	1 cut(s)	1075
PkrI	GCNGC	2 cut(s)	712, 719
PleI	GAGTC	2 cut(s)	402, 1076
PmaCI	CACGTG	1 cut(s)	596
PmlI	CACGTG	1 cut(s)	596
PpsI	GAGTC	2 cut(s)	402, 1076
Ppu21I	YACGTR	1 cut(s)	596
Psp1406I	AACGTT	1 cut(s)	1145
Psp6I	CCWGG	1 cut(s)	955
PspCI	CACGTG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	955
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	876, 1019, 1028
PsuI	RGATCY	1 cut(s)	4
PvuII	CAGCTG	1 cut(s)	1153
RsaI	GTAC	1 cut(s)	826
RsaNI	GTAC	1 cut(s)	825
RseI	CAYNNNNRTG	2 cut(s)	425, 993
SaqAI	TTAA	5 cut(s)	150, 189, 488, 984, 1005
SatI	GCNGC	2 cut(s)	711, 718
Sau3AI	GATC	3 cut(s)	4, 107, 730
Sau96I	GGNCC	3 cut(s)	876, 1019, 1028
SchI	GAGTC	2 cut(s)	402, 1076
ScrFI	CCNGG	2 cut(s)	528, 957
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	1089
SfuI	TTCGAA	2 cut(s)	649, 675
SinI	GGWCC	2 cut(s)	876, 1028
SmiMI	CAYNNNNRTG	2 cut(s)	425, 993
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	6 cut(s)	65, 74, 432, 684, 914, 1103
StyD4I	CCNGG	2 cut(s)	526, 955
StyI	CCWWGG	1 cut(s)	913
TaaI	ACNGT	2 cut(s)	328, 890
TaiI	ACGT	3 cut(s)	228, 598, 1148
TaqI	TCGA	5 cut(s)	136, 649, 675, 724, 1097
TaqII	GACCGA	1 cut(s)	893
TfiI	GAWTC	2 cut(s)	47, 90
Tru1I	TTAA	5 cut(s)	150, 189, 488, 984, 1005
Tru9I	TTAA	5 cut(s)	150, 189, 488, 984, 1005
TscAI	CASTG	2 cut(s)	100, 526
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	710, 717
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	109, 380, 829
TspGWI	ACGGA	3 cut(s)	333, 390, 982
TspRI	CASTG	2 cut(s)	100, 526
VpaK11BI	GGWCC	2 cut(s)	876, 1028
XapI	RAATTY	5 cut(s)	115, 379, 836, 856, 1013
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	1 cut(s)	823
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XmaJI	CCTAGG	1 cut(s)	913
XmiI	GTMKAC	2 cut(s)	219, 964
XspI	CTAG	6 cut(s)	65, 74, 432, 684, 914, 1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.