Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Forward (+)

896991 .. 900115

Gene Structure 3125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026160

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCTGTTGCTGAGAGTGCACCGAGCTTCGATAACTCATCGGAGTCCAATGCTCAGAGCGATCTCGAAAACCCACCAAAACCCAAAATGGACTCGGCTGCTGTGGTGAGTGTGGACCCCAATTTACAGTCCAATGGTGGTGATGATCAGAGTCCTGAGCTGCAGAAGGCTCAAATGGGCCAGATGCAAAATGGGTTCGAGTCCAATGGGGCGGCTGCTGATGACCATCAGATGGTGAAGGCTGGTGAGTATGGGACTGATCAGAGCTCCAATGGGGATGAGAATTTCAAGAGGGATATGAGGGATTTGGAAGAGTTGTTGTCCAAGTTGAATCCCATGGCTCAGGAATTCGTACCTCTAAGCCTTGCCAACAACCAAGGGTTTGCTCTTCCTGGTGGATTTGGCTACACTAACAATCTGTTGCTGCAGGCCAATTCCGGCAATGGGAATGGATTTATGGGCAAAAGGAAGAAGAATGGCTATAGTAATCAAGCCAGGAGAAGGAACTATTACAAGCTGAGTTTGGCACAGCGAGAGGAGATGATCAGGAGGACTGTGTATGTTTCTGACATTGACCAACAGGTTACTGAAGAGAACCTGGCTGCTCTCTTTATTAATTGTGGACAGGTTGTAGACTGTCGTGTATGTGGTGATCCTAATTCTGTTCTTCGATTTGCTTTTATTGAGTTTACAGATGAAGAAGGTGCAATGGCTGCTTTGAGTCTGTCAGGAACCATGCTTGGCTACTACCCTGTAAGAGTGCTGCCTTCCAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCCAGGTCAGATGATGAACGTGAAATGTGCTCAAGAACTATTTATTGTACCAATATTGACAAGAAGGTTACTCAAGCTGATGTCAAACTGTTTTTTGAATCACTTTGTGGAGAGGTTCAACGCCTGAGGCTCCTTGGAGACTATCATCATTCCACTCGTATTTGTTTTGTTGAGTTTACAGTGGCTGAAAGTGCAATTGCAGCTCTTAACTGTAGCGGTGTAGTTTTGGGATCACTGCCTATAAGGGTCAGCCCGTCAAAGACACCTGTCCGCCCCCGTGCTCCTCCTCGCTCTCCATTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

371

Amino Acids

40.56

Weight (kDa)

5.23

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	186 - 248	8e-12	RNA recognition motif
RRM_1	PF00076	283 - 350	6.3e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	633
AciI	CCGC	3 cut(s)	212, 1023, 1078
AclWI	GGATC	2 cut(s)	647, 1045
AcsI	RAATTY	2 cut(s)	283, 347
AcuI	CTGAAG	1 cut(s)	609
AdeI	CACNNNGTG	1 cut(s)	914
AfaI	GTAC	2 cut(s)	354, 856
AfiI	CCNNNNNNNGG	3 cut(s)	232, 444, 501
AgsI	TTSAA	4 cut(s)	289, 331, 905, 926
AjnI	CCWGG	4 cut(s)	391, 494, 597, 809
AluBI	AGCT	6 cut(s)	27, 160, 267, 517, 884, 1010
AluI	AGCT	6 cut(s)	27, 160, 267, 517, 884, 1010
Alw21I	GWGCWC	4 cut(s)	22, 269, 839, 1090
Alw26I	GTCTC	1 cut(s)	939
Alw44I	GTGCAC	1 cut(s)	18
AlwI	GGATC	2 cut(s)	647, 1045
AlwNI	CAGNNNCTG	1 cut(s)	992
AoxI	GGCC	2 cut(s)	178, 429
ApaLI	GTGCAC	1 cut(s)	18
ApeKI	GCWGC	8 cut(s)	98, 160, 215, 424, 602, 713, 763, 1007
ApoI	RAATTY	2 cut(s)	283, 347
AseI	ATTAAT	1 cut(s)	615
AspS9I	GGNCC	2 cut(s)	115, 178
AsuHPI	GGTGA	5 cut(s)	118, 152, 247, 257, 662
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	932
BaeGI	GKGCMC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	269
Bbv12I	GWGCWC	4 cut(s)	22, 269, 839, 1090
BbvI	GCAGC	8 cut(s)	85, 147, 202, 411, 589, 700, 750, 1019
BccI	CCATC	2 cut(s)	226, 234
BciT130I	CCWGG	4 cut(s)	393, 496, 599, 811
BclI	TGATCA	3 cut(s)	145, 259, 543
BcoDI	GTCTC	1 cut(s)	939
BfaI	CTAG	1 cut(s)	1111
BfmI	CTRYAG	4 cut(s)	161, 425, 481, 1018
BisI	GCNGC	9 cut(s)	99, 161, 213, 216, 425, 603, 714, 764, 1008
BlsI	GCNGC	9 cut(s)	100, 162, 214, 217, 426, 604, 715, 765, 1009
Bme1390I	CCNGG	4 cut(s)	393, 496, 599, 811
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 178
BmiI	GGNNCC	3 cut(s)	117, 733, 938
BmrFI	CCNGG	4 cut(s)	393, 496, 599, 811
BmsI	GCATC	1 cut(s)	174
BoxI	GACNNNNGTC	1 cut(s)	1073
Bpu10I	CCTNAGC	2 cut(s)	156, 342
BpuEI	CTTGAG	2 cut(s)	823, 864
BsaBI	GATNNNNATC	1 cut(s)	225
BsaJI	CCNNGG	4 cut(s)	336, 376, 809, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 444, 501
Bse21I	CCTNAGG	1 cut(s)	932
Bse3DI	GCAATG	3 cut(s)	448, 714, 1103
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	4 cut(s)	393, 496, 599, 811
BseDI	CCNNGG	4 cut(s)	336, 376, 809, 940
BseGI	GGATG	1 cut(s)	283
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	3 cut(s)	232, 444, 501
BseMI	GCAATG	3 cut(s)	448, 714, 1103
BseMII	CTCAG	5 cut(s)	68, 147, 356, 509, 923
BseRI	GAGGAG	3 cut(s)	551, 1080, 1083
BseSI	GKGCMC	1 cut(s)	22
BseXI	GCAGC	8 cut(s)	85, 147, 202, 411, 589, 700, 750, 1019
BshFI	GGCC	2 cut(s)	180, 431
BsiHKAI	GWGCWC	4 cut(s)	22, 269, 839, 1090
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	3 cut(s)	232, 444, 501
BsmAI	GTCTC	1 cut(s)	939
BsmFI	GGGAC	1 cut(s)	268
BsnI	GGCC	2 cut(s)	180, 431
Bsp1286I	GDGCHC	4 cut(s)	22, 269, 839, 1090
Bsp143I	GATC	6 cut(s)	61, 145, 259, 543, 652, 1037
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	3 cut(s)	212, 1023, 1078
BspANI	GGCC	2 cut(s)	180, 431
BspCNI	CTCAG	6 cut(s)	4, 67, 148, 355, 510, 924
BspLI	GGNNCC	3 cut(s)	117, 733, 938
BspMAI	CTGCAG	2 cut(s)	165, 429
BspPI	GGATC	2 cut(s)	647, 1045
BspQI	GCTCTTC	1 cut(s)	393
BsrDI	GCAATG	3 cut(s)	448, 714, 1103
BssECI	CCNNGG	4 cut(s)	336, 376, 809, 940
BssMI	GATC	6 cut(s)	61, 145, 259, 543, 652, 1037
BssT1I	CCWWGG	3 cut(s)	336, 376, 940
Bst2UI	CCWGG	4 cut(s)	393, 496, 599, 811
Bst4CI	ACNGT	6 cut(s)	129, 556, 638, 897, 988, 1019
Bst6I	CTCTTC	3 cut(s)	306, 393, 585
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	7 cut(s)	12, 54, 156, 342, 359, 518, 932
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	6 cut(s)	64, 148, 262, 546, 655, 1040
BstMAI	GTCTC	1 cut(s)	939
BstMBI	GATC	6 cut(s)	61, 145, 259, 543, 652, 1037
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 713, 998, 1007
BstNI	CCWGG	4 cut(s)	393, 496, 599, 811
BstPAI	GACNNNNGTC	1 cut(s)	1073
BstSCI	CCNGG	4 cut(s)	391, 494, 597, 809
BstSFI	CTRYAG	4 cut(s)	161, 425, 481, 1018
BstSLI	GKGCMC	1 cut(s)	22
BstV1I	GCAGC	8 cut(s)	85, 147, 202, 411, 589, 700, 750, 1019
Bsu36I	CCTNAGG	1 cut(s)	932
BsuRI	GGCC	2 cut(s)	180, 431
BtgI	CCRYGG	1 cut(s)	336
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	1040
BtsIMutI	CAGTG	2 cut(s)	993, 1040
Cac8I	GCNNGC	1 cut(s)	429
CaiI	CAGNNNCTG	1 cut(s)	992
Cfr13I	GGNCC	2 cut(s)	115, 178
Csp6I	GTAC	2 cut(s)	353, 855
CviAII	CATG	2 cut(s)	337, 736
CviQI	GTAC	2 cut(s)	353, 855
DdeI	CTNAG	7 cut(s)	12, 54, 156, 342, 359, 518, 932
DpnI	GATC	6 cut(s)	63, 147, 261, 545, 654, 1039
DpnII	GATC	6 cut(s)	61, 145, 259, 543, 652, 1037
DraIII	CACNNNGTG	1 cut(s)	914
Eam1104I	CTCTTC	3 cut(s)	306, 393, 585
EarI	CTCTTC	3 cut(s)	306, 393, 585
EciI	GGCGGA	1 cut(s)	1067
Ecl136II	GAGCTC	1 cut(s)	267
Eco130I	CCWWGG	3 cut(s)	336, 376, 940
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	267
Eco57I	CTGAAG	1 cut(s)	609
Eco81I	CCTNAGG	1 cut(s)	932
EcoICRI	GAGCTC	1 cut(s)	267
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	4 cut(s)	391, 494, 597, 809
EcoT14I	CCWWGG	3 cut(s)	336, 376, 940
EcoT38I	GRGCYC	1 cut(s)	269
ErhI	CCWWGG	3 cut(s)	336, 376, 940
FaeI	CATG	2 cut(s)	340, 739
FaiI	YATR	9 cut(s)	252, 299, 338, 458, 483, 561, 646, 737, 1049
FaqI	GGGAC	1 cut(s)	268
FatI	CATG	2 cut(s)	336, 735
FbaI	TGATCA	3 cut(s)	145, 259, 543
FblI	GTMKAC	1 cut(s)	633
Fnu4HI	GCNGC	9 cut(s)	99, 161, 213, 216, 425, 603, 714, 764, 1008
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	9 cut(s)	99, 161, 213, 216, 425, 603, 714, 764, 1008
FspBI	CTAG	1 cut(s)	1111
GluI	GCNGC	9 cut(s)	99, 161, 213, 216, 425, 603, 714, 764, 1008
HaeIII	GGCC	2 cut(s)	180, 431
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	2 cut(s)	340, 739
HincII	GTYRAC	1 cut(s)	793
HindII	GTYRAC	1 cut(s)	793
HinfI	GANTC	7 cut(s)	44, 92, 151, 200, 331, 721, 905
HpaI	GTTAAC	1 cut(s)	793
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	5 cut(s)	118, 152, 247, 257, 662
Hpy166II	GTNNAC	7 cut(s)	20, 115, 623, 634, 690, 793, 984
Hpy188I	TCNGA	7 cut(s)	43, 57, 150, 231, 264, 568, 817
Hpy188III	TCNNGA	7 cut(s)	65, 155, 289, 344, 547, 729, 840
Hpy8I	GTNNAC	7 cut(s)	20, 115, 623, 634, 690, 793, 984
HpyAV	CCTTC	6 cut(s)	160, 232, 495, 695, 777, 865
HpyCH4III	ACNGT	6 cut(s)	129, 556, 638, 897, 988, 1019
HpyCH4IV	ACGT	1 cut(s)	826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 713, 998, 1007
HpyF3I	CTNAG	7 cut(s)	12, 54, 156, 342, 359, 518, 932
HpySE526I	ACGT	1 cut(s)	826
Hsp92II	CATG	2 cut(s)	340, 739
Ksp22I	TGATCA	3 cut(s)	145, 259, 543
KspAI	GTTAAC	1 cut(s)	793
Kzo9I	GATC	6 cut(s)	61, 145, 259, 543, 652, 1037
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	3 cut(s)	272, 942, 1093
Lsp1109I	GCAGC	8 cut(s)	85, 147, 202, 411, 589, 700, 750, 1019
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	1111
MaeII	ACGT	1 cut(s)	826
MaeIII	GTNAC	2 cut(s)	583, 874
MalI	GATC	6 cut(s)	63, 147, 261, 545, 654, 1039
MboI	GATC	6 cut(s)	61, 145, 259, 543, 652, 1037
MboII	GAAGA	7 cut(s)	323, 380, 481, 484, 602, 659, 710
MfeI	CAATTG	2 cut(s)	780, 1002
MhlI	GDGCHC	4 cut(s)	22, 269, 839, 1090
MluCI	AATT	8 cut(s)	121, 283, 347, 433, 616, 658, 780, 1002
MlyI	GAGTC	5 cut(s)	53, 86, 160, 209, 730
MnlI	CCTC	9 cut(s)	285, 294, 366, 529, 543, 913, 927, 1101, 1104
MseI	TTAA	3 cut(s)	615, 792, 1014
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	4 cut(s)	393, 496, 599, 811
MunI	CAATTG	2 cut(s)	780, 1002
MvaI	CCWGG	4 cut(s)	393, 496, 599, 811
MwoI	GCNNNNNNNGC	4 cut(s)	17, 713, 998, 1007
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	6 cut(s)	61, 145, 259, 543, 652, 1037
NlaIII	CATG	2 cut(s)	340, 739
NlaIV	GGNNCC	3 cut(s)	117, 733, 938
NmeAIII	GCCGAG	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	331, 905
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	9 cut(s)	100, 162, 214, 217, 426, 604, 715, 765, 1009
PleI	GAGTC	5 cut(s)	52, 86, 159, 208, 729
PpsI	GAGTC	5 cut(s)	52, 86, 159, 208, 729
PshAI	GACNNNNGTC	1 cut(s)	1073
PshBI	ATTAAT	1 cut(s)	615
Psp124BI	GAGCTC	1 cut(s)	269
Psp6I	CCWGG	4 cut(s)	391, 494, 597, 809
PspGI	CCWGG	4 cut(s)	391, 494, 597, 809
PspN4I	GGNNCC	3 cut(s)	117, 733, 938
PspPI	GGNCC	2 cut(s)	115, 178
PstI	CTGCAG	2 cut(s)	165, 429
PstNI	CAGNNNCTG	1 cut(s)	992
RsaI	GTAC	2 cut(s)	354, 856
RsaNI	GTAC	2 cut(s)	353, 855
SacI	GAGCTC	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	615, 792, 1014
SatI	GCNGC	9 cut(s)	99, 161, 213, 216, 425, 603, 714, 764, 1008
Sau3AI	GATC	6 cut(s)	61, 145, 259, 543, 652, 1037
Sau96I	GGNCC	2 cut(s)	115, 178
SchI	GAGTC	5 cut(s)	53, 86, 160, 209, 730
ScrFI	CCNGG	4 cut(s)	393, 496, 599, 811
SduI	GDGCHC	4 cut(s)	22, 269, 839, 1090
SfaNI	GCATC	1 cut(s)	174
SfcI	CTRYAG	4 cut(s)	161, 425, 481, 1018
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	838, 879
SmoI	CTYRAG	2 cut(s)	838, 879
Sse9I	AATT	8 cut(s)	121, 283, 347, 433, 616, 658, 780, 1002
SsiI	CCGC	3 cut(s)	212, 1023, 1078
SspI	AATATT	1 cut(s)	862
SspMI	CTAG	1 cut(s)	1111
SstI	GAGCTC	1 cut(s)	269
StyD4I	CCNGG	4 cut(s)	391, 494, 597, 809
StyI	CCWWGG	3 cut(s)	336, 376, 940
TaaI	ACNGT	6 cut(s)	129, 556, 638, 897, 988, 1019
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	4 cut(s)	30, 66, 198, 670
TasI	AATT	8 cut(s)	121, 283, 347, 433, 616, 658, 780, 1002
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	2 cut(s)	331, 905
Tru1I	TTAA	3 cut(s)	615, 792, 1014
Tru9I	TTAA	3 cut(s)	615, 792, 1014
TscAI	CASTG	2 cut(s)	993, 1047
TseI	GCWGC	8 cut(s)	98, 160, 215, 424, 602, 713, 763, 1007
TspDTI	ATGAA	2 cut(s)	711, 837
TspRI	CASTG	2 cut(s)	993, 1047
Van91I	CCANNNNNTGG	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	18
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	2 cut(s)	283, 347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	633
XspI	CTAG	1 cut(s)	1111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.