Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003389.1

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

678 .. 4661

Gene Structure 3984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003389.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atggctgttgctgagaatgctccgagcttcgataactcatcggagtccaatgctcagagcgatctcgaaaacccaccaaaacccaaaatggactcggctgctgtggtgagtgtggaccccaatttgcagtccaatggtggtggtggtgatcagaacaattctgagctgaagagccaggagggtttgtcagtccccaaccacaaggctcaaatgggccagatgcaaattgggttcgagtccaatggggtggtggctgctgatgaccatcagatggtgaaggctggtgggtatgggactgatcagagctccaatggggatgagaatttcaagagggatatgagggatttggaagagttgttgtccaagttgaatcccatggctcaggaattcatacctctaagccttgccaacaaccaagggcaaactcttcctggtggatttggctacactaacaatcagttgctgcaggccaattccggcaatgggaatggatttatgggcaaaaggcagaagaagaatggctatagtaatcaagccaggagaaggaactattacaagctgagtttggcacagcgagaggagatgatcaggaggactgtgtatgtttctgacattgaccaacaggttactgaagagaacctggctgctctctttattaattgcggacaggttgtagactgtcgtgtatgtggtgatcctaattctgttcttcgatttgcttttattgagtttacagatgaagaaggtgcaatggctgctttgagtctgtcaggaaccatgcttggctactaccctgtaagagtgctgccttccaaaactgcaattgcacctgttaacccaacatttttgcccaggtcagatgatgaacgtgaaatgtgctcaagaactatttattgtaccaatattgacaagaaggttactcaagctgatgtcaaactgttttttgaatcactttgtggagaggttcaacgcctgaggctccttggagattatcatcattccactcgtatttgttttgttgagtttacagtggctgaaagtgcaattgcagctcttaactgtagcggtgtagttttgggatcactgcctataagggtcagcccatcaaagacacctgtccgcccccgtgctcctcctcgctctccattgcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

384

Amino Acids

41.99

Weight (kDa)

5.54

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	675
AciI	CCGC	3 cut(s)	663, 1065, 1120
AclWI	GGATC	2 cut(s)	689, 1087
AcsI	RAATTY	2 cut(s)	322, 386
AcuI	CTGAAG	2 cut(s)	188, 651
AdeI	CACNNNGTG	1 cut(s)	956
AfaI	GTAC	1 cut(s)	898
AfiI	CCNNNNNNNGG	3 cut(s)	271, 483, 543
AgsI	TTSAA	4 cut(s)	328, 370, 947, 968
AjnI	CCWGG	5 cut(s)	174, 430, 536, 639, 851
AluBI	AGCT	6 cut(s)	27, 166, 306, 559, 926, 1052
AluI	AGCT	6 cut(s)	27, 166, 306, 559, 926, 1052
Alw21I	GWGCWC	3 cut(s)	308, 881, 1132
AlwI	GGATC	2 cut(s)	689, 1087
AlwNI	CAGNNNCTG	2 cut(s)	463, 1034
AoxI	GGCC	2 cut(s)	214, 468
ApeKI	GCWGC	7 cut(s)	98, 254, 463, 644, 755, 805, 1049
ApoI	RAATTY	2 cut(s)	322, 386
AseI	ATTAAT	1 cut(s)	657
AspS9I	GGNCC	2 cut(s)	115, 214
AsuHPI	GGTGA	4 cut(s)	118, 158, 286, 704
AvaII	GGWCC	1 cut(s)	115
AxyI	CCTNAGG	1 cut(s)	974
BanII	GRGCYC	1 cut(s)	308
Bbv12I	GWGCWC	3 cut(s)	308, 881, 1132
BbvI	GCAGC	7 cut(s)	85, 241, 450, 631, 742, 792, 1061
BccI	CCATC	3 cut(s)	265, 273, 1111
BciT130I	CCWGG	5 cut(s)	176, 432, 538, 641, 853
BclI	TGATCA	3 cut(s)	148, 298, 585
BfaI	CTAG	1 cut(s)	1153
BfmI	CTRYAG	3 cut(s)	464, 523, 1060
BisI	GCNGC	7 cut(s)	99, 255, 464, 645, 756, 806, 1050
BlsI	GCNGC	7 cut(s)	100, 256, 465, 646, 757, 807, 1051
Bme1390I	CCNGG	5 cut(s)	176, 432, 538, 641, 853
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	2 cut(s)	115, 214
BmiI	GGNNCC	3 cut(s)	117, 775, 980
BmrFI	CCNGG	5 cut(s)	176, 432, 538, 641, 853
BmsI	GCATC	1 cut(s)	210
BoxI	GACNNNNGTC	1 cut(s)	1115
Bpu10I	CCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	865, 906
BsaBI	GATNNNNATC	2 cut(s)	264, 993
BsaJI	CCNNGG	4 cut(s)	375, 415, 851, 982
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	271, 483, 543
Bse21I	CCTNAGG	1 cut(s)	974
Bse3DI	GCAATG	3 cut(s)	487, 756, 1145
Bse8I	GATNNNNATC	2 cut(s)	264, 993
BseBI	CCWGG	5 cut(s)	176, 432, 538, 641, 853
BseDI	CCNNGG	4 cut(s)	375, 415, 851, 982
BseGI	GGATG	1 cut(s)	322
BseJI	GATNNNNATC	2 cut(s)	264, 993
BseLI	CCNNNNNNNGG	3 cut(s)	271, 483, 543
BseMI	GCAATG	3 cut(s)	487, 756, 1145
BseMII	CTCAG	5 cut(s)	68, 153, 395, 551, 965
BseRI	GAGGAG	3 cut(s)	593, 1122, 1125
BseXI	GCAGC	7 cut(s)	85, 241, 450, 631, 742, 792, 1061
BshFI	GGCC	2 cut(s)	216, 470
BsiHKAI	GWGCWC	3 cut(s)	308, 881, 1132
BsiSI	CCGG	1 cut(s)	477
BslFI	GGGAC	2 cut(s)	176, 307
BslI	CCNNNNNNNGG	3 cut(s)	271, 483, 543
BsmFI	GGGAC	2 cut(s)	176, 307
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	216, 470
Bsp1286I	GDGCHC	3 cut(s)	308, 881, 1132
Bsp143I	GATC	6 cut(s)	61, 148, 298, 585, 694, 1079
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	3 cut(s)	663, 1065, 1120
BspANI	GGCC	2 cut(s)	216, 470
BspCNI	CTCAG	6 cut(s)	4, 67, 154, 394, 552, 966
BspLI	GGNNCC	3 cut(s)	117, 775, 980
BspMAI	CTGCAG	1 cut(s)	468
BspPI	GGATC	2 cut(s)	689, 1087
BspQI	GCTCTTC	1 cut(s)	164
BsrDI	GCAATG	3 cut(s)	487, 756, 1145
BssECI	CCNNGG	4 cut(s)	375, 415, 851, 982
BssMI	GATC	6 cut(s)	61, 148, 298, 585, 694, 1079
BssT1I	CCWWGG	3 cut(s)	375, 415, 982
Bst2UI	CCWGG	5 cut(s)	176, 432, 538, 641, 853
Bst4CI	ACNGT	5 cut(s)	598, 680, 939, 1030, 1061
Bst6I	CTCTTC	4 cut(s)	164, 345, 432, 627
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	7 cut(s)	12, 54, 162, 381, 398, 560, 974
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	322
BstKTI	GATC	6 cut(s)	64, 151, 301, 588, 697, 1082
BstMBI	GATC	6 cut(s)	61, 148, 298, 585, 694, 1079
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 755, 1040, 1049
BstNI	CCWGG	5 cut(s)	176, 432, 538, 641, 853
BstPAI	GACNNNNGTC	1 cut(s)	1115
BstSCI	CCNGG	5 cut(s)	174, 430, 536, 639, 851
BstSFI	CTRYAG	3 cut(s)	464, 523, 1060
BstV1I	GCAGC	7 cut(s)	85, 241, 450, 631, 742, 792, 1061
BstXI	CCANNNNNNTGG	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	974
BsuRI	GGCC	2 cut(s)	216, 470
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	1 cut(s)	1082
BtsIMutI	CAGTG	2 cut(s)	1035, 1082
Cac8I	GCNNGC	1 cut(s)	468
CaiI	CAGNNNCTG	2 cut(s)	463, 1034
Cfr13I	GGNCC	2 cut(s)	115, 214
Csp6I	GTAC	1 cut(s)	897
CspCI	CAANNNNNGTGG	2 cut(s)	121, 156
CviAII	CATG	2 cut(s)	376, 778
CviQI	GTAC	1 cut(s)	897
DdeI	CTNAG	7 cut(s)	12, 54, 162, 381, 398, 560, 974
DpnI	GATC	6 cut(s)	63, 150, 300, 587, 696, 1081
DpnII	GATC	6 cut(s)	61, 148, 298, 585, 694, 1079
DraIII	CACNNNGTG	1 cut(s)	956
Eam1104I	CTCTTC	4 cut(s)	164, 345, 432, 627
EarI	CTCTTC	4 cut(s)	164, 345, 432, 627
EciI	GGCGGA	1 cut(s)	1109
Ecl136II	GAGCTC	1 cut(s)	306
Eco130I	CCWWGG	3 cut(s)	375, 415, 982
Eco24I	GRGCYC	1 cut(s)	308
Eco47I	GGWCC	1 cut(s)	115
Eco53kI	GAGCTC	1 cut(s)	306
Eco57I	CTGAAG	2 cut(s)	188, 651
Eco81I	CCTNAGG	1 cut(s)	974
EcoICRI	GAGCTC	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	5 cut(s)	174, 430, 536, 639, 851
EcoT14I	CCWWGG	3 cut(s)	375, 415, 982
EcoT38I	GRGCYC	1 cut(s)	308
ErhI	CCWWGG	3 cut(s)	375, 415, 982
FaeI	CATG	2 cut(s)	379, 781
FaqI	GGGAC	2 cut(s)	176, 307
FatI	CATG	2 cut(s)	375, 777
FbaI	TGATCA	3 cut(s)	148, 298, 585
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	7 cut(s)	99, 255, 464, 645, 756, 806, 1050
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	308
Fsp4HI	GCNGC	7 cut(s)	99, 255, 464, 645, 756, 806, 1050
FspBI	CTAG	1 cut(s)	1153
GluI	GCNGC	7 cut(s)	99, 255, 464, 645, 756, 806, 1050
HaeIII	GGCC	2 cut(s)	216, 470
HapII	CCGG	1 cut(s)	477
Hin1II	CATG	2 cut(s)	379, 781
HincII	GTYRAC	1 cut(s)	835
HindII	GTYRAC	1 cut(s)	835
HinfI	GANTC	6 cut(s)	44, 92, 236, 370, 763, 947
HpaI	GTTAAC	1 cut(s)	835
HpaII	CCGG	1 cut(s)	477
HphI	GGTGA	4 cut(s)	118, 158, 286, 704
Hpy166II	GTNNAC	5 cut(s)	115, 676, 732, 835, 1026
Hpy188I	TCNGA	9 cut(s)	24, 43, 57, 153, 163, 270, 303, 610, 859
Hpy188III	TCNNGA	6 cut(s)	65, 328, 383, 589, 771, 882
Hpy8I	GTNNAC	5 cut(s)	115, 676, 732, 835, 1026
HpyAV	CCTTC	5 cut(s)	271, 537, 737, 819, 907
HpyCH4III	ACNGT	5 cut(s)	598, 680, 939, 1030, 1061
HpyCH4IV	ACGT	1 cut(s)	868
HpyCH4V	TGCA	9 cut(s)	127, 223, 466, 749, 821, 827, 1043, 1049, 1150
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 755, 1040, 1049
HpyF3I	CTNAG	7 cut(s)	12, 54, 162, 381, 398, 560, 974
HpySE526I	ACGT	1 cut(s)	868
Hsp92II	CATG	2 cut(s)	379, 781
Ksp22I	TGATCA	3 cut(s)	148, 298, 585
KspAI	GTTAAC	1 cut(s)	835
Kzo9I	GATC	6 cut(s)	61, 148, 298, 585, 694, 1079
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	4 cut(s)	25, 311, 984, 1135
Lsp1109I	GCAGC	7 cut(s)	85, 241, 450, 631, 742, 792, 1061
LweI	GCATC	1 cut(s)	210
MaeI	CTAG	1 cut(s)	1153
MaeII	ACGT	1 cut(s)	868
MaeIII	GTNAC	2 cut(s)	625, 916
MalI	GATC	6 cut(s)	63, 150, 300, 587, 696, 1081
MboI	GATC	6 cut(s)	61, 148, 298, 585, 694, 1079
MboII	GAAGA	8 cut(s)	181, 362, 419, 523, 526, 644, 701, 752
MfeI	CAATTG	2 cut(s)	822, 1044
MhlI	GDGCHC	3 cut(s)	308, 881, 1132
MlyI	GAGTC	4 cut(s)	53, 86, 245, 772
MseI	TTAA	3 cut(s)	657, 834, 1056
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	5 cut(s)	176, 432, 538, 641, 853
MunI	CAATTG	2 cut(s)	822, 1044
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	5 cut(s)	176, 432, 538, 641, 853
MwoI	GCNNNNNNNGC	4 cut(s)	17, 755, 1040, 1049
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	6 cut(s)	61, 148, 298, 585, 694, 1079
NlaIII	CATG	2 cut(s)	379, 781
NlaIV	GGNNCC	3 cut(s)	117, 775, 980
NmeAIII	GCCGAG	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	2 cut(s)	370, 947
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	7 cut(s)	100, 256, 465, 646, 757, 807, 1051
PleI	GAGTC	4 cut(s)	52, 86, 244, 771
PpsI	GAGTC	4 cut(s)	52, 86, 244, 771
PshAI	GACNNNNGTC	1 cut(s)	1115
PshBI	ATTAAT	1 cut(s)	657
Psp124BI	GAGCTC	1 cut(s)	308
Psp6I	CCWGG	5 cut(s)	174, 430, 536, 639, 851
PspGI	CCWGG	5 cut(s)	174, 430, 536, 639, 851
PspN4I	GGNNCC	3 cut(s)	117, 775, 980
PspPI	GGNCC	2 cut(s)	115, 214
PstI	CTGCAG	1 cut(s)	468
PstNI	CAGNNNCTG	2 cut(s)	463, 1034
RsaI	GTAC	1 cut(s)	898
RsaNI	GTAC	1 cut(s)	897
SacI	GAGCTC	1 cut(s)	308
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	657, 834, 1056
SatI	GCNGC	7 cut(s)	99, 255, 464, 645, 756, 806, 1050
Sau3AI	GATC	6 cut(s)	61, 148, 298, 585, 694, 1079
Sau96I	GGNCC	2 cut(s)	115, 214
SchI	GAGTC	4 cut(s)	53, 86, 245, 772
ScrFI	CCNGG	5 cut(s)	176, 432, 538, 641, 853
SduI	GDGCHC	3 cut(s)	308, 881, 1132
SfaNI	GCATC	1 cut(s)	210
SfcI	CTRYAG	3 cut(s)	464, 523, 1060
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	2 cut(s)	880, 921
SmoI	CTYRAG	2 cut(s)	880, 921
SsiI	CCGC	3 cut(s)	663, 1065, 1120
SspI	AATATT	1 cut(s)	904
SspMI	CTAG	1 cut(s)	1153
SstI	GAGCTC	1 cut(s)	308
StyD4I	CCNGG	5 cut(s)	174, 430, 536, 639, 851
StyI	CCWWGG	3 cut(s)	375, 415, 982
TaaI	ACNGT	5 cut(s)	598, 680, 939, 1030, 1061
TaiI	ACGT	1 cut(s)	871
TaqI	TCGA	4 cut(s)	30, 66, 234, 712
TfiI	GAWTC	2 cut(s)	370, 947
Tru1I	TTAA	3 cut(s)	657, 834, 1056
Tru9I	TTAA	3 cut(s)	657, 834, 1056
TscAI	CASTG	2 cut(s)	1035, 1089
TseI	GCWGC	7 cut(s)	98, 254, 463, 644, 755, 805, 1049
TspDTI	ATGAA	3 cut(s)	379, 753, 879
TspRI	CASTG	2 cut(s)	1035, 1089
Van91I	CCANNNNNTGG	1 cut(s)	271
VpaK11BI	GGWCC	1 cut(s)	115
VspI	ATTAAT	1 cut(s)	657
XapI	RAATTY	2 cut(s)	322, 386
XcmI	CCANNNNNNNNNTGG	2 cut(s)	224, 247
XmiI	GTMKAC	1 cut(s)	675
XspI	CTAG	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.