Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

31734561 .. 31738435

Gene Structure 3875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1227700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTGTTGCTGAGAATGCACCAAATTTCGACAACACAGCAGTGTCGTCAGACTCGAATGCACCGAACGATCTCGAAAACCGAAAACCCAGAATCGATTCCTCTGTGGTTCTGGGTGCCGAGCCCAATGTACAGTCCAACGGAGACGATCAGAATCCGGAGGGGAAGTTTCTAGAGCAGGAGAAAGTGACAACTTTCTCAGTCGCCACTAATAATCACAAGGCTCAATCGGGTCAGACCCCAAATGGGGTTGATTCCAATGGGGTCGATAACCATCAGACGGCGGAGGATATGTCTGATGGCTATGTGATTGATCAGAGGTCGAATGGGGAAGGGGATGAGAAATACAAGCGTGAAATGAGAGATTTGGAGGACTTGCTGTCTAAGTTGAATCCCATGGCTAAGGAGTTTGTGCCTCCTTCTCTTGTCAACAACAATGGCGGCTTTGATTTTGCTGGTGGGTTTGGATTTACTAACGGATTTATAATGCACACTAACTCTGGCAATGCCAATGGACTAATGGGTAGGAAGAATGGTTATAGTCAAGGTCGGCGTAGGAACTATTACAAATTGAATTTGGCTCAGAGGGAGGAAATGATTAGGAGGACTGTATATGTATCTGACATTGACCAACAGGTTACTGAAGAGAACCTGGCTGCTCTCTTTCTTGGCTGTGGACAGGTTGTGGACTGTCGTGTCTGCGGTGATCCAAATTCAGTTCTTCGATTTGCCTTCATTGAGTTCACAGATGAAGAAGGTGCAAGGAATGCTCTAAGTCTGTCAGGAACGATGCTTGGCTACTACCCAGTAAAGGTGCTGCCTTCAAAAACTGCAATTGCACCTGTTAACCCAACATTTTTGCCAAGGTGTGATGATGAGCGTGAGATGTGCTCAAGGACTATTTACTGTACAAATATTGACAAGAAGGTTACTCAAGCTGATGTCAAACTCTTTTTTGAAACACTTTGTGGAGAGGTTCAGCGCCTGAGGCTGCTTGGAGACTTTCATCACTCCACTCGTATTGCTTTTGTTGAATTTACTGTGGCTGAAAGCGCAATTGCGGCTCTTAACTGTAGTGGTGTGGTTATGGGATCGCTCCCGATAAGGGTAAGCCCCTCAAAGACACCAGTTCGACCCCGTGCCCCTCGTTCTCCGCCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

388

Amino Acids

42.55

Weight (kDa)

5.26

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAM2	PF07145	128 - 141	4.1e-06	Ataxin-2 C-terminal region
RRM_1	PF00076	204 - 266	1e-11	RNA recognition motif
RRM_1	PF00076	301 - 365	4.6e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	485
AasI	GACNNNNNNGTC	1 cut(s)	695
AccB1I	GGYRCC	1 cut(s)	116
AccIII	TCCGGA	1 cut(s)	157
AciI	CCGC	6 cut(s)	284, 441, 702, 1061, 1154, 1157
AclWI	GGATC	2 cut(s)	701, 1099
AcsI	RAATTY	4 cut(s)	25, 574, 712, 1034
AcuI	CTGAAG	1 cut(s)	663
AdeI	CACNNNGTG	1 cut(s)	968
AfaI	GTAC	2 cut(s)	132, 910
AfiI	CCNNNNNNNGG	5 cut(s)	246, 247, 280, 811, 1105
AgsI	TTSAA	5 cut(s)	391, 574, 825, 959, 1034
AhdI	GACNNNNNGTC	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	651
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	1 cut(s)	938
AluI	AGCT	1 cut(s)	938
Alw21I	GWGCWC	1 cut(s)	893
Alw26I	GTCTC	2 cut(s)	138, 993
AlwI	GGATC	2 cut(s)	701, 1099
AlwNI	CAGNNNCTG	1 cut(s)	985
Aor13HI	TCCGGA	1 cut(s)	157
ApeKI	GCWGC	3 cut(s)	656, 817, 991
ApoI	RAATTY	4 cut(s)	25, 574, 712, 1034
Asp700I	GAANNNNTTC	1 cut(s)	97
AspLEI	GCGC	2 cut(s)	984, 1055
AsuHPI	GGTGA	1 cut(s)	716
AxyI	CCTNAGG	1 cut(s)	986
BaeGI	GKGCMC	1 cut(s)	1144
BanI	GGYRCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	893
BbvI	GCAGC	3 cut(s)	643, 804, 978
BccI	CCATC	2 cut(s)	282, 293
BceAI	ACGGC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	653
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	138, 993
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	1072
BfoI	RGCGCY	1 cut(s)	985
BisI	GCNGC	6 cut(s)	442, 657, 818, 992, 1062, 1157
BlsI	GCNGC	6 cut(s)	443, 658, 819, 993, 1063, 1158
Bme1390I	CCNGG	1 cut(s)	653
BmeRI	GACNNNNNGTC	1 cut(s)	379
BmiI	GGNNCC	1 cut(s)	118
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	780
BmuI	ACTGGG	1 cut(s)	800
BplI	GAGNNNNNCTC	2 cut(s)	875, 907
Bpu10I	CCTNAGC	1 cut(s)	402
BpuEI	CTTGAG	2 cut(s)	877, 918
Bsa29I	ATCGAT	1 cut(s)	96
BsaBI	GATNNNNATC	2 cut(s)	153, 273
BsaJI	CCNNGG	2 cut(s)	396, 863
BsaWI	WCCGGW	1 cut(s)	157
BsaXI	ACNNNNNCTCC	4 cut(s)	152, 182, 278, 308
Bsc4I	CCNNNNNNNGG	5 cut(s)	246, 247, 280, 811, 1105
Bse1I	ACTGG	2 cut(s)	806, 1127
Bse21I	CCTNAGG	1 cut(s)	986
Bse3DI	GCAATG	1 cut(s)	511
Bse8I	GATNNNNATC	2 cut(s)	153, 273
BseAI	TCCGGA	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	653
BseCI	ATCGAT	1 cut(s)	96
BseDI	CCNNGG	2 cut(s)	396, 863
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	2 cut(s)	153, 273
BseLI	CCNNNNNNNGG	5 cut(s)	246, 247, 280, 811, 1105
BseMI	GCAATG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	213, 596, 977
BseNI	ACTGG	2 cut(s)	806, 1127
BseSI	GKGCMC	1 cut(s)	1144
BseXI	GCAGC	3 cut(s)	643, 804, 978
BshNI	GGYRCC	1 cut(s)	116
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	893
BsiSI	CCGG	1 cut(s)	158
BslI	CCNNNNNNNGG	5 cut(s)	246, 247, 280, 811, 1105
BsmAI	GTCTC	2 cut(s)	138, 993
BsmBI	CGTCTC	1 cut(s)	138
BsmI	GAATGC	3 cut(s)	22, 64, 772
Bsp1286I	GDGCHC	3 cut(s)	126, 893, 1144
Bsp13I	TCCGGA	1 cut(s)	157
Bsp1407I	TGTACA	2 cut(s)	130, 908
Bsp143I	GATC	5 cut(s)	70, 148, 313, 706, 1091
Bsp19I	CCATGG	1 cut(s)	396
BspACI	CCGC	6 cut(s)	284, 441, 702, 1061, 1154, 1157
BspCNI	CTCAG	4 cut(s)	4, 212, 595, 978
BspDI	ATCGAT	1 cut(s)	96
BspEI	TCCGGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	118
BspPI	GGATC	2 cut(s)	701, 1099
BspT107I	GGYRCC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	511
BsrGI	TGTACA	2 cut(s)	130, 908
BsrI	ACTGG	2 cut(s)	806, 1127
BssECI	CCNNGG	2 cut(s)	396, 863
BssMI	GATC	5 cut(s)	70, 148, 313, 706, 1091
BssT1I	CCWWGG	2 cut(s)	396, 863
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	6 cut(s)	135, 610, 692, 908, 1042, 1073
Bst6I	CTCTTC	1 cut(s)	639
BstAPI	GCANNNNNTGC	1 cut(s)	767
BstAUI	TGTACA	2 cut(s)	130, 908
BstDEI	CTNAG	7 cut(s)	12, 199, 384, 402, 582, 773, 986
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	1 cut(s)	343
BstH2I	RGCGCY	1 cut(s)	985
BstHHI	GCGC	2 cut(s)	984, 1055
BstKTI	GATC	5 cut(s)	73, 151, 316, 709, 1094
BstMAI	GTCTC	2 cut(s)	138, 993
BstMBI	GATC	5 cut(s)	70, 148, 313, 706, 1091
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 767, 988, 1052, 1061
BstNI	CCWGG	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	651
BstSFI	CTRYAG	1 cut(s)	1072
BstSLI	GKGCMC	1 cut(s)	1144
BstV1I	GCAGC	3 cut(s)	643, 804, 978
Bsu15I	ATCGAT	1 cut(s)	96
Bsu36I	CCTNAGG	1 cut(s)	986
BsuTUI	ATCGAT	1 cut(s)	96
BtgI	CCRYGG	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	343
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	985
CfoI	GCGC	2 cut(s)	984, 1055
ClaI	ATCGAT	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	131, 909
CspCI	CAANNNNNGTGG	2 cut(s)	1003, 1038
CviAII	CATG	1 cut(s)	397
CviQI	GTAC	2 cut(s)	131, 909
DdeI	CTNAG	7 cut(s)	12, 199, 384, 402, 582, 773, 986
DpnI	GATC	5 cut(s)	72, 150, 315, 708, 1093
DpnII	GATC	5 cut(s)	70, 148, 313, 706, 1091
DraIII	CACNNNGTG	1 cut(s)	968
DrdI	GACNNNNNNGTC	1 cut(s)	695
DriI	GACNNNNNGTC	1 cut(s)	379
DseDI	GACNNNNNNGTC	1 cut(s)	695
Eam1104I	CTCTTC	1 cut(s)	639
Eam1105I	GACNNNNNGTC	1 cut(s)	379
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	2 cut(s)	299, 1143
Eco130I	CCWWGG	2 cut(s)	396, 863
Eco24I	GRGCYC	1 cut(s)	126
Eco57I	CTGAAG	1 cut(s)	663
Eco81I	CCTNAGG	1 cut(s)	986
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	2 cut(s)	396, 863
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	396, 863
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	1 cut(s)	400
FaiI	YATR	8 cut(s)	293, 306, 398, 485, 540, 613, 615, 1088
FatI	CATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	6 cut(s)	442, 657, 818, 992, 1062, 1157
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	6 cut(s)	442, 657, 818, 992, 1062, 1157
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	2 cut(s)	983, 1054
GluI	GCNGC	6 cut(s)	442, 657, 818, 992, 1062, 1157
HaeII	RGCGCY	1 cut(s)	985
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	2 cut(s)	984, 1055
Hin1II	CATG	1 cut(s)	400
Hin6I	GCGC	2 cut(s)	982, 1053
HinP1I	GCGC	2 cut(s)	982, 1053
HincII	GTYRAC	2 cut(s)	430, 847
HindII	GTYRAC	2 cut(s)	430, 847
HinfI	GANTC	6 cut(s)	53, 93, 98, 154, 254, 391
HpaI	GTTAAC	1 cut(s)	847
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	5 cut(s)	430, 677, 688, 744, 847
Hpy188I	TCNGA	8 cut(s)	52, 153, 237, 279, 298, 318, 585, 622
Hpy188III	TCNNGA	5 cut(s)	74, 158, 173, 783, 1099
Hpy8I	GTNNAC	5 cut(s)	430, 677, 688, 744, 847
HpyAV	CCTTC	6 cut(s)	326, 429, 742, 749, 831, 919
HpyCH4III	ACNGT	6 cut(s)	135, 610, 692, 908, 1042, 1073
HpyCH4V	TGCA	6 cut(s)	20, 62, 490, 761, 833, 839
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 767, 988, 1052, 1061
HpyF3I	CTNAG	7 cut(s)	12, 199, 384, 402, 582, 773, 986
Hsp92II	CATG	1 cut(s)	400
HspAI	GCGC	2 cut(s)	982, 1053
Kpn2I	TCCGGA	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	313
KspAI	GTTAAC	1 cut(s)	847
Kzo9I	GATC	5 cut(s)	70, 148, 313, 706, 1091
LmnI	GCTCC	1 cut(s)	1101
Lsp1109I	GCAGC	3 cut(s)	643, 804, 978
LweI	GCATC	1 cut(s)	780
MaeI	CTAG	1 cut(s)	173
MaeIII	GTNAC	3 cut(s)	187, 637, 928
MalI	GATC	5 cut(s)	72, 150, 315, 708, 1093
MboI	GATC	5 cut(s)	70, 148, 313, 706, 1091
MboII	GAAGA	4 cut(s)	541, 656, 713, 764
MfeI	CAATTG	2 cut(s)	834, 1056
MhlI	GDGCHC	3 cut(s)	126, 893, 1144
MluCI	AATT	7 cut(s)	25, 569, 574, 712, 834, 1034, 1056
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	162
MroI	TCCGGA	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	2 cut(s)	846, 1068
MslI	CAYNNNNRTG	1 cut(s)	41
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	653
MunI	CAATTG	2 cut(s)	834, 1056
Mva1269I	GAATGC	3 cut(s)	22, 64, 772
MvaI	CCWGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	5 cut(s)	17, 767, 988, 1052, 1061
NcoI	CCATGG	1 cut(s)	396
NdeII	GATC	5 cut(s)	70, 148, 313, 706, 1091
NlaIII	CATG	1 cut(s)	400
NlaIV	GGNNCC	1 cut(s)	118
NmeAIII	GCCGAG	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 62
PctI	GAATGC	3 cut(s)	22, 64, 772
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	5 cut(s)	93, 98, 154, 254, 391
PkrI	GCNGC	6 cut(s)	443, 658, 819, 993, 1063, 1158
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	651
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	985
RsaI	GTAC	2 cut(s)	132, 910
RsaNI	GTAC	2 cut(s)	131, 909
RseI	CAYNNNNRTG	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	846, 1068
SatI	GCNGC	6 cut(s)	442, 657, 818, 992, 1062, 1157
Sau3AI	GATC	5 cut(s)	70, 148, 313, 706, 1091
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	3 cut(s)	126, 893, 1144
SfaNI	GCATC	1 cut(s)	780
SfcI	CTRYAG	1 cut(s)	1072
SmiMI	CAYNNNNRTG	1 cut(s)	41
SmlI	CTYRAG	2 cut(s)	892, 933
SmoI	CTYRAG	2 cut(s)	892, 933
Sse9I	AATT	7 cut(s)	25, 569, 574, 712, 834, 1034, 1056
SsiI	CCGC	6 cut(s)	284, 441, 702, 1061, 1154, 1157
SspI	AATATT	1 cut(s)	916
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	2 cut(s)	396, 863
TaaI	ACNGT	6 cut(s)	135, 610, 692, 908, 1042, 1073
TaqI	TCGA	8 cut(s)	30, 56, 75, 96, 267, 323, 724, 1132
TasI	AATT	7 cut(s)	25, 569, 574, 712, 834, 1034, 1056
TatI	WGTACW	2 cut(s)	130, 908
TauI	GCSGC	3 cut(s)	444, 1064, 1159
TfiI	GAWTC	5 cut(s)	93, 98, 154, 254, 391
Tru1I	TTAA	2 cut(s)	846, 1068
Tru9I	TTAA	2 cut(s)	846, 1068
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	3 cut(s)	656, 817, 991
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	3 cut(s)	724, 765, 995
TspGWI	ACGGA	2 cut(s)	156, 492
TspRI	CASTG	1 cut(s)	48
XapI	RAATTY	4 cut(s)	25, 574, 712, 1034
XbaI	TCTAGA	1 cut(s)	172
XcmI	CCANNNNNNNNNTGG	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.