RLG00000004775

Polyadenylate-binding protein-interacting protein 11-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
62168631 .. 62172600
3970 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004775

Sequence Viewer

Length: 1167 bp
ATGGCAGTGGTTGAGAATCTCGAGAATGCTGGGGTGGAGTTGGGGAAGACCGTGGGGTCCGCCTCAGCGAATCGGAACCCGGAGGTTACGACGGAGCAGCCATCGGCGGCTGCTGCTGGTGGTGGTGGTGCCGTGACATCCAACGATCAGGATCAGTCCTCGGCCAAGCACGGGCCTTTACGGCAGCGGCTCGAGGCGGCTCTACAGCAGCAGCAGCAGCAGTACGCGATGGTAAACGGTAACGGTAACGGTAACGGGAACCAGAACGGTCAGCTGAGCTTCGATCAGGTGGTGCGATCTAACGGCGAGATGAACGGCGGGGATCACCACGACGTGGGGGACAGCTTCAATCGGGACATGAGGGAGCTGAGGGAGCTCTTCTCTAAGCTCAACCCCATGGCGGAGGAGTTTGTGCCTCCCTCACATGCTAACAACAACCATGGAATCAACGGTGGGTTTGTTGACTTCACCGCACTGATGATGCAGAATGGAAACAGAATCGGACAAATTAACGGTGGTGGTTTTCCCGGCCGACGAAGGAATAACCAAGGAAAGAGGAGAATGAACAGCAGGACCAGTCTAGCCCAGCGAGAAGATAGAATTCGAAGGACTGTGTATGTGTCTGACATTGATCAACAGGTCACTGAGGAACAGCTCGCAGCGCTCTTCATTACTTGTGGGCAGGTTGTTGACTGCCGAATTTGTGGTGACCCGAATTCTGTACTCCGTTTTGCCTTTATCGAGTTCACTGATGAAGAAGGTGCAAGGGCTGCTTTGAGTCTTGCCGGGACAATGCTTGGGTTCTACCCTGTGAGGGTGTTGCCTTCTAAGACAGCTATTGCACCTGTTAACCCAACATTCTTGCCTCGGACTGAAGATGAACGTGAGATGTGTGCAAGAACGATATACTGTACAAATATTGACAAGAAGGTTTCTCAAGCTGATGTTAAGCTCTTTTTTGAATCAGTTTGTGGAGAGGTTTTTCGTCTGAGGCTGCTGGGAGACTATCACCACTCCACTCGTATTGCATTTGTTGAGTTTGTGATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGTGTGGTTTTGGGATCATTGCCAATCAGGGTAAGTCCATCCAAGACACCTGTTCGTCCACGCGCTCCTCGGCTTCCCATACATTGA

Protein Analysis

389

Amino Acids

42.33

Weight (kDa)

6.72

Isoelectric Point (pI)

41.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAM2 PF07145 126 - 142 8.3e-06 Ataxin-2 C-terminal region
RRM_1 PF00076 205 - 267 3.3e-12 RNA recognition motif
RRM_1 PF00076 302 - 369 4.5e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 673
AccB1I GGYRCC 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 334
AccII CGCG 2 cut(s) 227, 1143
AciI CCGC 7 cut(s) 60, 107, 187, 197, 318, 401, 471
AclWI GGATC 3 cut(s) 159, 330, 1102
AcoI YGGCCR 2 cut(s) 162, 529
AcsI RAATTY 3 cut(s) 600, 699, 715
AcuI CTGAAG 1 cut(s) 894
AdeI CACNNNGTG 1 cut(s) 334
AfaI GTAC 3 cut(s) 224, 723, 913
AfeI AGCGCT 1 cut(s) 663
AfiI CCNNNNNNNGG 4 cut(s) 171, 334, 400, 814
AgsI TTSAA 2 cut(s) 349, 962
AjiI CACGTC 1 cut(s) 334
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 996
AlwI GGATC 3 cut(s) 159, 330, 1102
Ama87I CYCGRG 2 cut(s) 20, 191
Aor51HI AGCGCT 1 cut(s) 663
AoxI GGCC 3 cut(s) 162, 173, 529
ApoI RAATTY 3 cut(s) 600, 699, 715
AspLEI GCGC 2 cut(s) 664, 1145
AspS9I GGNCC 3 cut(s) 57, 173, 573
AsuC2I CCSGG 3 cut(s) 80, 528, 787
AsuHPI GGTGA 4 cut(s) 317, 460, 719, 1001
AsuII TTCGAA 1 cut(s) 604
AvaI CYCGRG 2 cut(s) 20, 191
AvaII GGWCC 2 cut(s) 57, 573
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 378
BbvCI CCTCAGC 2 cut(s) 64, 368
BccI CCATC 4 cut(s) 109, 223, 1039, 1126
BceAI ACGGC 4 cut(s) 116, 197, 319, 331
BclI TGATCA 1 cut(s) 631
BcnI CCSGG 3 cut(s) 80, 528, 787
BcoDI GTCTC 1 cut(s) 996
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 2 cut(s) 203, 1075
BfoI RGCGCY 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 673
BglI GCCNNNNNGGC 1 cut(s) 181
BlpI GCTNAGC 1 cut(s) 275
Bme1390I CCNGG 3 cut(s) 80, 528, 787
Bme18I GGWCC 2 cut(s) 57, 573
BmeT110I CYCGRG 2 cut(s) 20, 191
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 3 cut(s) 57, 173, 573
BmiI GGNNCC 4 cut(s) 58, 77, 130, 260
BmrFI CCNGG 3 cut(s) 80, 528, 787
BmsI GCATC 1 cut(s) 471
BpiI GAAGAC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 365, 397
Bpu10I CCTNAGC 2 cut(s) 64, 368
Bpu1102I GCTNAGC 1 cut(s) 275
Bpu14I TTCGAA 1 cut(s) 604
BpuEI CTTGAG 1 cut(s) 921
BpuMI CCSGG 3 cut(s) 80, 528, 787
BsaBI GATNNNNATC 1 cut(s) 150
BsaJI CCNNGG 7 cut(s) 51, 159, 396, 439, 547, 866, 1148
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 334, 400, 814
Bse1I ACTGG 1 cut(s) 576
Bse3DI GCAATG 1 cut(s) 1097
Bse8I GATNNNNATC 1 cut(s) 150
BseDI CCNNGG 7 cut(s) 51, 159, 396, 439, 547, 866, 1148
BseGI GGATG 2 cut(s) 137, 1118
BseJI GATNNNNATC 1 cut(s) 150
BseLI CCNNNNNNNGG 4 cut(s) 171, 334, 400, 814
BseMI GCAATG 1 cut(s) 1097
BseMII CTCAG 5 cut(s) 78, 266, 359, 636, 980
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 3 cut(s) 419, 571, 1137
BseX3I CGGCCG 1 cut(s) 529
BseYI CCCAGC 3 cut(s) 29, 585, 997
Bsh1236I CGCG 2 cut(s) 227, 1143
Bsh1285I CGRYCG 1 cut(s) 532
BshFI GGCC 3 cut(s) 164, 175, 531
BshNI GGYRCC 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 532
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 2 cut(s) 20, 191
BsiSI CCGG 3 cut(s) 80, 528, 786
BslFI GGGAC 3 cut(s) 353, 368, 802
BslI CCNNNNNNNGG 4 cut(s) 171, 334, 400, 814
BsmAI GTCTC 1 cut(s) 996
BsmFI GGGAC 3 cut(s) 353, 368, 802
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 164, 175, 531
BsoBI CYCGRG 2 cut(s) 20, 191
Bsp119I TTCGAA 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 378
Bsp1407I TGTACA 1 cut(s) 911
Bsp143I GATC 7 cut(s) 145, 151, 283, 296, 322, 631, 1094
Bsp1720I GCTNAGC 1 cut(s) 275
Bsp19I CCATGG 2 cut(s) 396, 439
BspACI CCGC 7 cut(s) 60, 107, 187, 197, 318, 401, 471
BspANI GGCC 3 cut(s) 164, 175, 531
BspCNI CTCAG 5 cut(s) 77, 267, 360, 637, 981
BspFNI CGCG 2 cut(s) 227, 1143
BspLI GGNNCC 4 cut(s) 58, 77, 130, 260
BspMI ACCTGC 1 cut(s) 673
BspPI GGATC 3 cut(s) 159, 330, 1102
BspQI GCTCTTC 2 cut(s) 383, 671
BspT104I TTCGAA 1 cut(s) 604
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 1097
BsrGI TGTACA 1 cut(s) 911
BsrI ACTGG 1 cut(s) 576
BssECI CCNNGG 7 cut(s) 51, 159, 396, 439, 547, 866, 1148
BssMI GATC 7 cut(s) 145, 151, 283, 296, 322, 631, 1094
BssT1I CCWWGG 3 cut(s) 396, 439, 547
Bst6I CTCTTC 2 cut(s) 383, 671
BstAPI GCANNNNNTGC 2 cut(s) 770, 1064
BstAUI TGTACA 1 cut(s) 911
BstBI TTCGAA 1 cut(s) 604
BstC8I GCNNGC 1 cut(s) 657
BstDEI CTNAG 7 cut(s) 64, 275, 368, 384, 645, 828, 989
BstDSI CCRYGG 3 cut(s) 51, 396, 439
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 2 cut(s) 137, 1118
BstFNI CGCG 2 cut(s) 227, 1143
BstH2I RGCGCY 1 cut(s) 665
BstHHI GCGC 2 cut(s) 664, 1145
BstKTI GATC 7 cut(s) 148, 154, 286, 299, 325, 634, 1097
BstMAI GTCTC 1 cut(s) 996
BstMBI GATC 7 cut(s) 145, 151, 283, 296, 322, 631, 1094
BstMCI CGRYCG 1 cut(s) 532
BstMWI GCNNNNNNNGC 9 cut(s) 113, 181, 214, 217, 373, 661, 770, 1055, 1064
BstNSI RCATGY 1 cut(s) 428
BstPI GGTNACC 1 cut(s) 707
BstSCI CCNGG 3 cut(s) 78, 526, 785
BstSFI CTRYAG 2 cut(s) 203, 1075
BstUI CGCG 2 cut(s) 227, 1143
BstV2I GAAGAC 1 cut(s) 53
BstZI CGGCCG 1 cut(s) 529
BsuRI GGCC 3 cut(s) 164, 175, 531
BtgI CCRYGG 3 cut(s) 51, 396, 439
BtgZI GCGATG 1 cut(s) 242
BtrI CACGTC 1 cut(s) 334
BtsCI GGATG 2 cut(s) 137, 1118
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 4 cut(s) 12, 473, 642, 747
BveI ACCTGC 1 cut(s) 673
Cac8I GCNNGC 1 cut(s) 657
CfoI GCGC 2 cut(s) 664, 1145
Cfr13I GGNCC 3 cut(s) 57, 173, 573
Csp6I GTAC 3 cut(s) 223, 722, 912
CspCI CAANNNNNGTGG 4 cut(s) 1006, 1041, 1060, 1095
CviAII CATG 4 cut(s) 358, 397, 425, 440
CviQI GTAC 3 cut(s) 223, 722, 912
DdeI CTNAG 7 cut(s) 64, 275, 368, 384, 645, 828, 989
DpnI GATC 7 cut(s) 147, 153, 285, 298, 324, 633, 1096
DpnII GATC 7 cut(s) 145, 151, 283, 296, 322, 631, 1094
DraIII CACNNNGTG 1 cut(s) 334
DrdI GACNNNNNNGTC 1 cut(s) 55
DseDI GACNNNNNNGTC 1 cut(s) 55
EaeI YGGCCR 2 cut(s) 162, 529
EagI CGGCCG 1 cut(s) 529
Eam1104I CTCTTC 2 cut(s) 383, 671
EarI CTCTTC 2 cut(s) 383, 671
EciI GGCGGA 2 cut(s) 49, 416
Ecl136II GAGCTC 1 cut(s) 376
EclXI CGGCCG 1 cut(s) 529
Eco130I CCWWGG 3 cut(s) 396, 439, 547
Eco24I GRGCYC 1 cut(s) 378
Eco47I GGWCC 2 cut(s) 57, 573
Eco47III AGCGCT 1 cut(s) 663
Eco52I CGGCCG 1 cut(s) 529
Eco53kI GAGCTC 1 cut(s) 376
Eco57I CTGAAG 1 cut(s) 894
Eco88I CYCGRG 2 cut(s) 20, 191
Eco91I GGTNACC 1 cut(s) 707
EcoICRI GAGCTC 1 cut(s) 376
EcoO65I GGTNACC 1 cut(s) 707
EcoRI GAATTC 2 cut(s) 600, 715
EcoT14I CCWWGG 3 cut(s) 396, 439, 547
EcoT38I GRGCYC 1 cut(s) 378
ErhI CCWWGG 3 cut(s) 396, 439, 547
FaeI CATG 4 cut(s) 361, 400, 428, 443
FaiI YATR 7 cut(s) 359, 398, 426, 441, 618, 907, 1160
FalI AAGNNNNNCTT 2 cut(s) 757, 789
FaqI GGGAC 3 cut(s) 353, 368, 802
FatI CATG 4 cut(s) 357, 396, 424, 439
FauI CCCGC 1 cut(s) 311
FbaI TGATCA 1 cut(s) 631
FokI GGATG 2 cut(s) 124, 1105
FriOI GRGCYC 1 cut(s) 378
FspBI CTAG 1 cut(s) 581
GlaI GCGC 2 cut(s) 663, 1144
GsaI CCCAGC 3 cut(s) 33, 589, 1001
HaeII RGCGCY 1 cut(s) 665
HaeIII GGCC 3 cut(s) 164, 175, 531
HapII CCGG 3 cut(s) 80, 528, 786
HhaI GCGC 2 cut(s) 664, 1145
Hin1II CATG 4 cut(s) 361, 400, 428, 443
Hin6I GCGC 2 cut(s) 662, 1143
HinP1I GCGC 2 cut(s) 662, 1143
HincII GTYRAC 3 cut(s) 463, 691, 850
HindII GTYRAC 3 cut(s) 463, 691, 850
HinfI GANTC 6 cut(s) 16, 70, 444, 498, 778, 962
HpaI GTTAAC 1 cut(s) 850
HpaII CCGG 3 cut(s) 80, 528, 786
HphI GGTGA 4 cut(s) 317, 460, 719, 1001
Hpy166II GTNNAC 6 cut(s) 235, 463, 691, 747, 850, 1139
Hpy188I TCNGA 5 cut(s) 75, 503, 625, 870, 990
Hpy188III TCNNGA 4 cut(s) 20, 22, 149, 353
Hpy8I GTNNAC 6 cut(s) 235, 463, 691, 747, 850, 1139
Hpy99I CGWCG 3 cut(s) 94, 335, 537
HpyAV CCTTC 5 cut(s) 531, 600, 752, 834, 922
HpyCH4IV ACGT 2 cut(s) 333, 883
HpyCH4V TGCA 6 cut(s) 484, 764, 842, 896, 1028, 1058
HpyF10VI GCNNNNNNNGC 9 cut(s) 113, 181, 214, 217, 373, 661, 770, 1055, 1064
HpyF3I CTNAG 7 cut(s) 64, 275, 368, 384, 645, 828, 989
HpySE526I ACGT 2 cut(s) 333, 883
Hsp92II CATG 4 cut(s) 361, 400, 428, 443
HspAI GCGC 2 cut(s) 662, 1143
Ksp22I TGATCA 1 cut(s) 631
KspAI GTTAAC 1 cut(s) 850
Kzo9I GATC 7 cut(s) 145, 151, 283, 296, 322, 631, 1094
LguI GCTCTTC 2 cut(s) 383, 671
LmnI GCTCC 4 cut(s) 94, 364, 373, 1150
LweI GCATC 1 cut(s) 471
MaeI CTAG 1 cut(s) 581
MaeII ACGT 2 cut(s) 333, 883
MaeIII GTNAC 7 cut(s) 85, 133, 239, 245, 251, 640, 707
MalI GATC 7 cut(s) 147, 153, 285, 298, 324, 633, 1096
MboI GATC 7 cut(s) 145, 151, 283, 296, 322, 631, 1094
MboII GAAGA 6 cut(s) 58, 370, 605, 658, 767, 887
MfeI CAATTG 1 cut(s) 1059
MhlI GDGCHC 1 cut(s) 378
MluCI AATT 5 cut(s) 507, 600, 699, 715, 1059
MlyI GAGTC 1 cut(s) 787
MmeI TCCRAC 1 cut(s) 165
MseI TTAA 3 cut(s) 510, 849, 948
MspA1I CMGCKG 2 cut(s) 187, 274
MspI CCGG 3 cut(s) 80, 528, 786
MspR9I CCNGG 3 cut(s) 80, 528, 787
MunI CAATTG 1 cut(s) 1059
Mva1269I GAATGC 1 cut(s) 31
MvnI CGCG 2 cut(s) 227, 1143
MwoI GCNNNNNNNGC 9 cut(s) 113, 181, 214, 217, 373, 661, 770, 1055, 1064
NciI CCSGG 3 cut(s) 80, 528, 787
NcoI CCATGG 2 cut(s) 396, 439
NdeII GATC 7 cut(s) 145, 151, 283, 296, 322, 631, 1094
NlaIII CATG 4 cut(s) 361, 400, 428, 443
NlaIV GGNNCC 4 cut(s) 58, 77, 130, 260
NmeAIII GCCGAG 2 cut(s) 140, 1129
NmuCI GTSAC 3 cut(s) 133, 640, 707
NspI RCATGY 1 cut(s) 428
NspV TTCGAA 1 cut(s) 604
PaeR7I CTCGAG 2 cut(s) 20, 191
PciSI GCTCTTC 2 cut(s) 383, 671
PctI GAATGC 1 cut(s) 31
PfeI GAWTC 5 cut(s) 16, 70, 444, 498, 962
PflMI CCANNNNNTGG 1 cut(s) 334
PleI GAGTC 1 cut(s) 786
PpsI GAGTC 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 378
PspEI GGTNACC 1 cut(s) 707
PspFI CCCAGC 3 cut(s) 29, 585, 997
PspN4I GGNNCC 4 cut(s) 58, 77, 130, 260
PspPI GGNCC 3 cut(s) 57, 173, 573
PspXI VCTCGAGB 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 274
RsaI GTAC 3 cut(s) 224, 723, 913
RsaNI GTAC 3 cut(s) 223, 722, 912
SacI GAGCTC 1 cut(s) 378
SapI GCTCTTC 2 cut(s) 383, 671
SaqAI TTAA 3 cut(s) 510, 849, 948
Sau3AI GATC 7 cut(s) 145, 151, 283, 296, 322, 631, 1094
Sau96I GGNCC 3 cut(s) 57, 173, 573
SchI GAGTC 1 cut(s) 787
ScrFI CCNGG 3 cut(s) 80, 528, 787
SduI GDGCHC 1 cut(s) 378
SfaNI GCATC 1 cut(s) 471
SfcI CTRYAG 2 cut(s) 203, 1075
Sfr274I CTCGAG 2 cut(s) 20, 191
SfuI TTCGAA 1 cut(s) 604
SinI GGWCC 2 cut(s) 57, 573
SlaI CTCGAG 2 cut(s) 20, 191
SmlI CTYRAG 3 cut(s) 20, 191, 936
SmoI CTYRAG 3 cut(s) 20, 191, 936
Sse9I AATT 5 cut(s) 507, 600, 699, 715, 1059
SsiI CCGC 7 cut(s) 60, 107, 187, 197, 318, 401, 471
SspI AATATT 1 cut(s) 919
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 3 cut(s) 78, 526, 785
StyI CCWWGG 3 cut(s) 396, 439, 547
TaiI ACGT 2 cut(s) 336, 886
TaqI TCGA 5 cut(s) 21, 192, 282, 604, 741
TasI AATT 5 cut(s) 507, 600, 699, 715, 1059
TatI WGTACW 2 cut(s) 721, 911
TauI GCSGC 3 cut(s) 110, 190, 200
TfiI GAWTC 5 cut(s) 16, 70, 444, 498, 962
Tru1I TTAA 3 cut(s) 510, 849, 948
Tru9I TTAA 3 cut(s) 510, 849, 948
TscAI CASTG 4 cut(s) 12, 480, 649, 754
TseFI GTSAC 3 cut(s) 133, 640, 707
Tsp45I GTSAC 3 cut(s) 133, 640, 707
TspDTI ATGAA 5 cut(s) 326, 578, 658, 768, 894
TspGWI ACGGA 2 cut(s) 107, 716
TspRI CASTG 4 cut(s) 12, 480, 649, 754
Van91I CCANNNNNTGG 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 57, 573
XapI RAATTY 3 cut(s) 600, 699, 715
XceI RCATGY 1 cut(s) 428
XhoI CTCGAG 2 cut(s) 20, 191
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.