Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Reverse (-)

35785505 .. 35788842

Gene Structure 3338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1298200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGCGGTTGCTGAGAATGCACCAAATTTCGACAACACAGCAGTGTCGTCGGACCCGAATGCACAGAACGATCTCGGAAACCCAAAACCCAGAGTCGATTCCTCTGTTGCTCTGAGTGCTGAGTCCAATGTACAGTCCAACGGAGACGATCAGAGTGTCGAGGGGAAGTTTCAGGAGCAGGAGAAAGTGACAACTTTCTCAGTCGCCACTAACAATCACAAAGCTCCATCGGGTCAGACCCCAAATGGGTTTGATTCCAATGGGGGGGTCGATAACCATCAGACGGAGGAGGCCAAGTCTGATGGTTATGTGATTGATCAGAGGTTGAATGGCGAAGGCGATGAGAATTACAACCGTGATATGAGAGATTTGGCGGACTTGTTGTCTAAGTTGAATCCCATGGCTGAGGAGTTTGTGCCTCCTTCCCTTGTCAACAACAACGGCGGCTTCGATTTTGCTGGTGGGTATGGATATACTAATGGTTTTGTAATGCACAGTAACTCTGGCAATGCCAATGGACTAATGGGTAGGAAGAAGAAGAATGGTTATAGTCAAGGTCGGCGTAAGAACTATTACAAATTGAATTTGGCTCAGAGGGAGGAGATGATTAGGAGGACTGTGTATGTATCTGACATTGATCAACAGGTTACTGAAGAGAACCTGGCTGCTCTTTTTCTTGGCTGTGGACAGGTTGTGGACTGTCGTGTCTGCGGTGATCCAAATTCGATTCTTCGATTTGCCTTCATTGAGTTCACAGATGAAGACGGTGCAAGGAATGCTCTAACTCTGTCAGGAACCATGCTTGGCTATTACCCAGTAAGGGTGCTGCCTTCAAAAACTGCAATTGCACCGGTTAACCCAACATTTTTGCCAAGGTCTGAGGATGAGCGTGAGATGTGCTCAAGGACTATTTACTGTACGAATATTGACAAGAAGGTTACTCAAGCTGATGTCAAACTCTTTTTTGAATCACTTTGTGGAGAGGTTCAGCGCCTGAGGCTGCTTGGAGACTATCAGCACTCCACTCGTATTGCTTTTGTTGAATTTACTGTGGCTGAAAGCGCAATTGCAGCTCTTAACTGTAGTGGTGTGGTTTTGGGATCGCTACCGATAAGGGTAAGCCCCTCAAAGACACCAGTTCGACCCCGTACCCCTCGTTCTCCATCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

391

Amino Acids

42.71

Weight (kDa)

5.18

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	207 - 269	1.8e-11	RNA recognition motif
RRM_1	PF00076	304 - 371	5.7e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	704
AciI	CCGC	4 cut(s)	5, 374, 444, 711
AclWI	GGATC	2 cut(s)	710, 1108
AcsI	RAATTY	4 cut(s)	25, 583, 721, 1043
AcuI	CTGAAG	1 cut(s)	672
AdeI	CACNNNGTG	1 cut(s)	977
AfaI	GTAC	3 cut(s)	132, 919, 1150
AfiI	CCNNNNNNNGG	4 cut(s)	246, 264, 283, 820
AgeI	ACCGGT	1 cut(s)	850
AgsI	TTSAA	6 cut(s)	328, 394, 583, 834, 968, 1043
AhdI	GACNNNNNGTC	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	660
AleI	CACNNNNGTG	1 cut(s)	41
AluBI	AGCT	3 cut(s)	224, 947, 1073
AluI	AGCT	3 cut(s)	224, 947, 1073
Alw21I	GWGCWC	1 cut(s)	902
Alw26I	GTCTC	2 cut(s)	138, 1002
AlwI	GGATC	2 cut(s)	710, 1108
AlwNI	CAGNNNCTG	1 cut(s)	994
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	4 cut(s)	665, 826, 1000, 1070
ApoI	RAATTY	4 cut(s)	25, 583, 721, 1043
AsiGI	ACCGGT	1 cut(s)	850
AspLEI	GCGC	2 cut(s)	993, 1064
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	1 cut(s)	52
AxyI	CCTNAGG	1 cut(s)	995
BbsI	GAAGAC	1 cut(s)	768
Bbv12I	GWGCWC	1 cut(s)	902
BbvCI	CCTCAGC	1 cut(s)	405
BbvI	GCAGC	4 cut(s)	652, 813, 987, 1082
BccI	CCATC	4 cut(s)	235, 285, 296, 1171
BceAI	ACGGC	1 cut(s)	457
BcgI	CGANNNNNNTGC	4 cut(s)	30, 64, 1007, 1041
BciT130I	CCWGG	1 cut(s)	662
BclI	TGATCA	2 cut(s)	316, 637
BcoDI	GTCTC	2 cut(s)	138, 1002
BfmI	CTRYAG	1 cut(s)	1081
BfoI	RGCGCY	1 cut(s)	994
BisI	GCNGC	5 cut(s)	445, 666, 827, 1001, 1071
BlsI	GCNGC	5 cut(s)	446, 667, 828, 1002, 1072
Bme1390I	CCNGG	1 cut(s)	662
Bme18I	GGWCC	1 cut(s)	52
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	54, 796
BmrFI	CCNGG	1 cut(s)	662
BmrI	ACTGGG	1 cut(s)	809
BmuI	ACTGGG	1 cut(s)	809
BpiI	GAAGAC	1 cut(s)	768
BplI	GAGNNNNNCTC	2 cut(s)	884, 916
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	2 cut(s)	886, 927
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	2 cut(s)	399, 872
BsaWI	WCCGGW	1 cut(s)	850
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 264, 283, 820
Bse118I	RCCGGY	1 cut(s)	850
Bse1I	ACTGG	2 cut(s)	815, 1136
Bse21I	CCTNAGG	1 cut(s)	995
Bse3DI	GCAATG	1 cut(s)	514
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	662
BseDI	CCNNGG	2 cut(s)	399, 872
BseGI	GGATG	1 cut(s)	889
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	4 cut(s)	246, 264, 283, 820
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	7 cut(s)	104, 111, 213, 396, 605, 870, 986
BseNI	ACTGG	2 cut(s)	815, 1136
BseRI	GAGGAG	3 cut(s)	302, 422, 614
BseXI	GCAGC	4 cut(s)	652, 813, 987, 1082
BshFI	GGCC	1 cut(s)	293
BshTI	ACCGGT	1 cut(s)	850
BsiHKAI	GWGCWC	1 cut(s)	902
BsiSI	CCGG	1 cut(s)	851
BslI	CCNNNNNNNGG	4 cut(s)	246, 264, 283, 820
BsmAI	GTCTC	2 cut(s)	138, 1002
BsmBI	CGTCTC	1 cut(s)	138
BsmI	GAATGC	3 cut(s)	22, 64, 781
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	902
Bsp1407I	TGTACA	1 cut(s)	130
Bsp143I	GATC	6 cut(s)	70, 148, 316, 637, 715, 1100
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	4 cut(s)	5, 374, 444, 711
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	8 cut(s)	4, 105, 112, 212, 397, 604, 871, 987
BspLI	GGNNCC	2 cut(s)	54, 796
BspPI	GGATC	2 cut(s)	710, 1108
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	850
BsrGI	TGTACA	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	815, 1136
BssAI	RCCGGY	1 cut(s)	850
BssECI	CCNNGG	2 cut(s)	399, 872
BssMI	GATC	6 cut(s)	70, 148, 316, 637, 715, 1100
BssT1I	CCWWGG	2 cut(s)	399, 872
Bst2UI	CCWGG	1 cut(s)	662
Bst4CI	ACNGT	9 cut(s)	135, 356, 497, 619, 701, 767, 917, 1051, 1082
Bst6I	CTCTTC	1 cut(s)	648
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstAUI	TGTACA	1 cut(s)	130
BstDEI	CTNAG	9 cut(s)	12, 113, 120, 199, 387, 405, 591, 879, 995
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	889
BstH2I	RGCGCY	1 cut(s)	994
BstHHI	GCGC	2 cut(s)	993, 1064
BstKTI	GATC	6 cut(s)	73, 151, 319, 640, 718, 1103
BstMAI	GTCTC	2 cut(s)	138, 1002
BstMBI	GATC	6 cut(s)	70, 148, 316, 637, 715, 1100
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 116, 776, 997, 1061, 1070
BstNI	CCWGG	1 cut(s)	662
BstSCI	CCNGG	1 cut(s)	660
BstSFI	CTRYAG	1 cut(s)	1081
BstV1I	GCAGC	4 cut(s)	652, 813, 987, 1082
BstV2I	GAAGAC	1 cut(s)	768
Bsu36I	CCTNAGG	1 cut(s)	995
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	399
BtgZI	GCGATG	2 cut(s)	354, 1149
BtsCI	GGATG	1 cut(s)	889
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
CaiI	CAGNNNCTG	1 cut(s)	994
CfoI	GCGC	2 cut(s)	993, 1064
Cfr10I	RCCGGY	1 cut(s)	850
Cfr13I	GGNCC	1 cut(s)	52
Csp6I	GTAC	3 cut(s)	131, 918, 1149
CspAI	ACCGGT	1 cut(s)	850
CspCI	CAANNNNNGTGG	2 cut(s)	1012, 1047
CviAII	CATG	2 cut(s)	400, 799
CviQI	GTAC	3 cut(s)	131, 918, 1149
DdeI	CTNAG	9 cut(s)	12, 113, 120, 199, 387, 405, 591, 879, 995
DpnI	GATC	6 cut(s)	72, 150, 318, 639, 717, 1102
DpnII	GATC	6 cut(s)	70, 148, 316, 637, 715, 1100
DraIII	CACNNNGTG	1 cut(s)	977
DrdI	GACNNNNNNGTC	1 cut(s)	704
DriI	GACNNNNNGTC	1 cut(s)	382
DseDI	GACNNNNNNGTC	1 cut(s)	704
Eam1104I	CTCTTC	1 cut(s)	648
Eam1105I	GACNNNNNGTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	648
EciI	GGCGGA	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	399, 872
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	672
Eco81I	CCTNAGG	1 cut(s)	995
EcoRII	CCWGG	1 cut(s)	660
EcoT14I	CCWWGG	2 cut(s)	399, 872
ErhI	CCWWGG	2 cut(s)	399, 872
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	403, 802
FaiI	YATR	8 cut(s)	309, 362, 401, 468, 474, 549, 624, 800
FatI	CATG	2 cut(s)	399, 798
FbaI	TGATCA	2 cut(s)	316, 637
Fnu4HI	GCNGC	5 cut(s)	445, 666, 827, 1001, 1071
FokI	GGATG	1 cut(s)	896
Fsp4HI	GCNGC	5 cut(s)	445, 666, 827, 1001, 1071
GlaI	GCGC	2 cut(s)	992, 1063
GluI	GCNGC	5 cut(s)	445, 666, 827, 1001, 1071
HaeII	RGCGCY	1 cut(s)	994
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	851
HhaI	GCGC	2 cut(s)	993, 1064
Hin1II	CATG	2 cut(s)	403, 802
Hin6I	GCGC	2 cut(s)	991, 1062
HinP1I	GCGC	2 cut(s)	991, 1062
HincII	GTYRAC	2 cut(s)	433, 856
HindII	GTYRAC	2 cut(s)	433, 856
HinfI	GANTC	7 cut(s)	93, 98, 122, 254, 394, 727, 968
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	1 cut(s)	851
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	5 cut(s)	433, 686, 697, 753, 856
Hpy188III	TCNNGA	2 cut(s)	173, 792
Hpy8I	GTNNAC	5 cut(s)	433, 686, 697, 753, 856
Hpy99I	CGWCG	1 cut(s)	52
HpyAV	CCTTC	5 cut(s)	329, 432, 751, 840, 928
HpyCH4III	ACNGT	9 cut(s)	135, 356, 497, 619, 701, 767, 917, 1051, 1082
HpyCH4V	TGCA	7 cut(s)	20, 62, 493, 770, 842, 848, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 116, 776, 997, 1061, 1070
HpyF3I	CTNAG	9 cut(s)	12, 113, 120, 199, 387, 405, 591, 879, 995
Hsp92II	CATG	2 cut(s)	403, 802
HspAI	GCGC	2 cut(s)	991, 1062
Ksp22I	TGATCA	2 cut(s)	316, 637
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	6 cut(s)	70, 148, 316, 637, 715, 1100
LmnI	GCTCC	2 cut(s)	175, 229
Lsp1109I	GCAGC	4 cut(s)	652, 813, 987, 1082
MaeIII	GTNAC	4 cut(s)	187, 497, 646, 937
MalI	GATC	6 cut(s)	72, 150, 318, 639, 717, 1102
MboI	GATC	6 cut(s)	70, 148, 316, 637, 715, 1100
MboII	GAAGA	6 cut(s)	544, 547, 550, 665, 722, 773
MfeI	CAATTG	2 cut(s)	843, 1065
MhlI	GDGCHC	1 cut(s)	902
MluCI	AATT	8 cut(s)	25, 346, 578, 583, 721, 843, 1043, 1065
MlyI	GAGTC	2 cut(s)	102, 131
MmeI	TCCRAC	2 cut(s)	30, 162
MseI	TTAA	2 cut(s)	855, 1077
MslI	CAYNNNNRTG	2 cut(s)	41, 1168
MspI	CCGG	1 cut(s)	851
MspR9I	CCNGG	1 cut(s)	662
MunI	CAATTG	2 cut(s)	843, 1065
Mva1269I	GAATGC	3 cut(s)	22, 64, 781
MvaI	CCWGG	1 cut(s)	662
MwoI	GCNNNNNNNGC	6 cut(s)	17, 116, 776, 997, 1061, 1070
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	6 cut(s)	70, 148, 316, 637, 715, 1100
NlaIII	CATG	2 cut(s)	403, 802
NlaIV	GGNNCC	2 cut(s)	54, 796
NmuCI	GTSAC	1 cut(s)	187
OliI	CACNNNNGTG	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	2 cut(s)	53, 447
PctI	GAATGC	3 cut(s)	22, 64, 781
PfeI	GAWTC	5 cut(s)	98, 254, 394, 727, 968
PinAI	ACCGGT	1 cut(s)	850
PkrI	GCNGC	5 cut(s)	446, 667, 828, 1002, 1072
PleI	GAGTC	2 cut(s)	101, 130
PpsI	GAGTC	2 cut(s)	101, 130
Psp6I	CCWGG	1 cut(s)	660
PspGI	CCWGG	1 cut(s)	660
PspN4I	GGNNCC	2 cut(s)	54, 796
PspPI	GGNCC	1 cut(s)	52
PsrI	GAACNNNNNNTAC	2 cut(s)	1141, 1173
PstNI	CAGNNNCTG	1 cut(s)	994
RsaI	GTAC	3 cut(s)	132, 919, 1150
RsaNI	GTAC	3 cut(s)	131, 918, 1149
RseI	CAYNNNNRTG	2 cut(s)	41, 1168
SaqAI	TTAA	2 cut(s)	855, 1077
SatI	GCNGC	5 cut(s)	445, 666, 827, 1001, 1071
Sau3AI	GATC	6 cut(s)	70, 148, 316, 637, 715, 1100
Sau96I	GGNCC	1 cut(s)	52
SchI	GAGTC	2 cut(s)	102, 131
ScrFI	CCNGG	1 cut(s)	662
SduI	GDGCHC	1 cut(s)	902
SfcI	CTRYAG	1 cut(s)	1081
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	41, 1168
SmlI	CTYRAG	2 cut(s)	901, 942
SmoI	CTYRAG	2 cut(s)	901, 942
Sse9I	AATT	8 cut(s)	25, 346, 578, 583, 721, 843, 1043, 1065
SsiI	CCGC	4 cut(s)	5, 374, 444, 711
SspI	AATATT	1 cut(s)	925
StyD4I	CCNGG	1 cut(s)	660
StyI	CCWWGG	2 cut(s)	399, 872
TaaI	ACNGT	9 cut(s)	135, 356, 497, 619, 701, 767, 917, 1051, 1082
TaqI	TCGA	8 cut(s)	30, 96, 159, 270, 450, 725, 733, 1141
TasI	AATT	8 cut(s)	25, 346, 578, 583, 721, 843, 1043, 1065
TatI	WGTACW	1 cut(s)	130
TauI	GCSGC	1 cut(s)	447
TfiI	GAWTC	5 cut(s)	98, 254, 394, 727, 968
Tru1I	TTAA	2 cut(s)	855, 1077
Tru9I	TTAA	2 cut(s)	855, 1077
TscAI	CASTG	1 cut(s)	48
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	665, 826, 1000, 1070
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	2 cut(s)	733, 774
TspGWI	ACGGA	2 cut(s)	156, 299
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	4 cut(s)	25, 583, 721, 1043
XcmI	CCANNNNNNNNNTGG	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.