Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002496

Physical Location & Seq

Genomic Coordinates Forward (+)

6040759 .. 6045916

Gene Structure 5158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCAGTGGTTGAGAATCTCGAGAATGCTGGGGTGGAGTTGGGGAAGACCGTGGGGTCCGCCTCAGCGAATCGGAACCCGGAGGCCGCTGCGGCGGAGCAGCCATCGGAGACATCCAACGATCAGGATCAGTCCTTGTCCGCCAACCACGGGCCTTTACGGCAGCGGCTTGAGGCGGCTATGCAGCAGAAGCAGCAGTACGCGATGGCTAACGGTAACGGTAACGGCAACAGCAACCAGAACGGTCAGCTGAGCTACGATCAGGTGGTGCATCACCAGCAGCGATCCAACGGCGAGATGAACGGCGGCGATCACCACGACGGTGGGGACAGCTTCAATCGGGACATGAGGGAGCTGAGGGAGCTGTTCTCTAAGCTCAACCCCATGGCCGAGGAGTTTGTGCCTCCTTCTCATGCTAACAACAACAACCACGGAATCAACGGCGGGTTTGTTGACTTCACCGCACTGATGATGCAGAACGGTAACAGAATGGGACAGATTAACGGTGGTGGCTTTCCCGGCCGACGGAGAAATAATCAAGGAAAGAGGAGAATTAACAGCAGGACCAGTCTAGCCCAGCGAGAAGATAGAATTCGGAGGACTGTGTATGTGTCTGACATTGATCAACAGGTCACTGAGGAACAGCTGGCGGCGCTATTTGTTACTTGTGGGCAGGTTGTTGACTGCCGAATCTGTGGTGACCCGAATTCTGTACTCCGTTTTGCCTTTATTGAGTTCACTGATGAAGAAGGTGCAAGGGCTGCTTTGAGTCTTGCTGGGACAATGCTTGGATTCTACCCTGTGAGGGTGTTGCCTTCTAAGACAGCTATTGCACCTGTTAACCCAACATTCTTGCCTCGGACTGAAGATGAACGTGAGATGTGTGCAAGAACTATATACTGTACAAATATTGACAAGAAGGTTTCTCAAGCTGATGTTAAGCTCTTTTTTGAATCAGTTTGTGGAGAGGTTTATCGTCTGAGGCTGCTGGGAGACTATCACCACTCCACTCGTATTGCATTTGTTGAGTTTGTGATGGCTGAAAGTGCAATTGCTGCTCTCAACTGTAGTGGTGTGGTTTTGGGATCATTGCCAATCAGGGTAAGTCCATCCAAGACACCTGTTCGTCCGCGCGCTCCTCGCCTTCCCATACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0016604 GO:0016607 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 RRM_1

Protein Analysis

386

Amino Acids

42.37

Weight (kDa)

6.57

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAM2	PF07145	122 - 138	8.2e-06	Ataxin-2 C-terminal region
RRM_1	PF00076	202 - 264	2.4e-12	RNA recognition motif
RRM_1	PF00076	299 - 366	2.9e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32790 AT1G32790 AT4G10610 AT4G10610
fragaria_vesca	FvH4_5g10630 FvH4_5g10630 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841 FvH4_7g32841
malus_domestica	MD01G1227700.v1.1 MD06G1121700.v1.1 MD07G1298200.v1.1 MD14G1138200.v1.1
prunus_persica	Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.2G318100_v2.0.a1 Prupe.5G132400_v2.0.a1
pyrus_communis	pycom01g23600 pycom06g11280 pycom07g27070 pycom14g11330
rosa_chinensis	RchiOBHm_Chr1g0382781 RchiOBHm_Chr7g0187511
rosa_laevigata	RLG00000004775 RLG00000026160
rosa_multiflora	Rmu_sc0003389.1_g000001 Rmu_sc0019127.1_g000002
rosa_roxburghii	Rroxscaffold_3G00267370 Rroxscaffold_4G00277910
rosa_rugosa	Rorug01G0435800 Rorug06G0482100
rosa_samantha	Rh1AG461100 Rh1BG417800 Rh1DG450000 Rh7BG088300 Rh7CG087600 Rh7DG089200
rosa_wichuraiana	Rw1G041060 Rw7G007660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	55
Acc36I	ACCTGC	1 cut(s)	664
AccII	CGCG	3 cut(s)	203, 1132, 1134
AclWI	GGATC	3 cut(s)	135, 279, 1093
AcoI	YGGCCR	2 cut(s)	387, 520
AcsI	RAATTY	2 cut(s)	591, 706
AcuI	CTGAAG	1 cut(s)	885
AfaI	GTAC	3 cut(s)	200, 714, 904
AfiI	CCNNNNNNNGG	3 cut(s)	150, 525, 805
AgsI	TTSAA	2 cut(s)	337, 953
AleI	CACNNNNGTG	1 cut(s)	321
Alw26I	GTCTC	2 cut(s)	104, 987
AlwI	GGATC	3 cut(s)	135, 279, 1093
Ama87I	CYCGRG	1 cut(s)	20
AoxI	GGCC	4 cut(s)	84, 152, 387, 520
ApeKI	GCWGC	9 cut(s)	89, 100, 163, 184, 193, 280, 761, 985, 1055
ApoI	RAATTY	2 cut(s)	591, 706
AspLEI	GCGC	3 cut(s)	655, 1134, 1136
AspS9I	GGNCC	3 cut(s)	57, 152, 564
AsuC2I	CCSGG	2 cut(s)	80, 519
AsuHPI	GGTGA	5 cut(s)	266, 305, 451, 710, 992
AvaI	CYCGRG	1 cut(s)	20
AvaII	GGWCC	2 cut(s)	57, 564
BarI	GAAGNNNNNNTAC	2 cut(s)	182, 214
BbsI	GAAGAC	1 cut(s)	53
BbvCI	CCTCAGC	2 cut(s)	64, 356
BbvI	GCAGC	9 cut(s)	76, 112, 175, 196, 205, 292, 748, 972, 1042
BccI	CCATC	4 cut(s)	112, 199, 1030, 1117
BceAI	ACGGC	5 cut(s)	176, 241, 307, 319, 457
BclI	TGATCA	1 cut(s)	622
BcnI	CCSGG	2 cut(s)	80, 519
BcoDI	GTCTC	2 cut(s)	104, 987
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	1066
BfoI	RGCGCY	1 cut(s)	656
BfuAI	ACCTGC	1 cut(s)	664
BglI	GCCNNNNNGGC	2 cut(s)	92, 160
BlpI	GCTNAGC	1 cut(s)	251
Bme1390I	CCNGG	2 cut(s)	80, 519
Bme18I	GGWCC	2 cut(s)	57, 564
BmeT110I	CYCGRG	1 cut(s)	20
BmgT120I	GGNCC	3 cut(s)	57, 152, 564
BmiI	GGNNCC	2 cut(s)	58, 77
BmrFI	CCNGG	2 cut(s)	80, 519
BmsI	GCATC	2 cut(s)	280, 462
BpiI	GAAGAC	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	353, 385
Bpu10I	CCTNAGC	2 cut(s)	64, 356
Bpu1102I	GCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	2 cut(s)	191, 912
BpuMI	CCSGG	2 cut(s)	80, 519
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	6 cut(s)	51, 148, 384, 390, 430, 857
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 525, 805
Bse1I	ACTGG	1 cut(s)	567
Bse3DI	GCAATG	1 cut(s)	1088
Bse8I	GATNNNNATC	1 cut(s)	126
BseDI	CCNNGG	6 cut(s)	51, 148, 384, 390, 430, 857
BseGI	GGATG	2 cut(s)	113, 1109
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	150, 525, 805
BseMI	GCAATG	1 cut(s)	1088
BseMII	CTCAG	5 cut(s)	78, 242, 347, 627, 971
BseNI	ACTGG	1 cut(s)	567
BsePI	GCGCGC	1 cut(s)	1132
BseRI	GAGGAG	3 cut(s)	407, 562, 1128
BseX3I	CGGCCG	1 cut(s)	520
BseXI	GCAGC	9 cut(s)	76, 112, 175, 196, 205, 292, 748, 972, 1042
BseYI	CCCAGC	4 cut(s)	29, 576, 776, 988
Bsh1236I	CGCG	3 cut(s)	203, 1132, 1134
Bsh1285I	CGRYCG	1 cut(s)	523
BshFI	GGCC	4 cut(s)	86, 154, 389, 522
BsiEI	CGRYCG	1 cut(s)	523
BsiHKCI	CYCGRG	1 cut(s)	20
BsiSI	CCGG	2 cut(s)	80, 519
BslFI	GGGAC	4 cut(s)	341, 356, 507, 793
BslI	CCNNNNNNNGG	3 cut(s)	150, 525, 805
BsmAI	GTCTC	2 cut(s)	104, 987
BsmFI	GGGAC	4 cut(s)	341, 356, 507, 793
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	4 cut(s)	86, 154, 389, 522
BsoBI	CYCGRG	1 cut(s)	20
Bsp1407I	TGTACA	1 cut(s)	902
Bsp143I	GATC	7 cut(s)	121, 127, 259, 284, 310, 622, 1085
Bsp1720I	GCTNAGC	1 cut(s)	251
Bsp19I	CCATGG	1 cut(s)	384
BspANI	GGCC	4 cut(s)	86, 154, 389, 522
BspCNI	CTCAG	5 cut(s)	77, 243, 348, 628, 972
BspFNI	CGCG	3 cut(s)	203, 1132, 1134
BspLI	GGNNCC	2 cut(s)	58, 77
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	3 cut(s)	135, 279, 1093
BsrDI	GCAATG	1 cut(s)	1088
BsrGI	TGTACA	1 cut(s)	902
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	6 cut(s)	51, 148, 384, 390, 430, 857
BssHII	GCGCGC	1 cut(s)	1132
BssMI	GATC	7 cut(s)	121, 127, 259, 284, 310, 622, 1085
BssT1I	CCWWGG	1 cut(s)	384
BstAPI	GCANNNNNTGC	2 cut(s)	761, 1055
BstAUI	TGTACA	1 cut(s)	902
BstC8I	GCNNGC	2 cut(s)	648, 1134
BstDEI	CTNAG	7 cut(s)	64, 251, 356, 372, 636, 819, 980
BstDSI	CCRYGG	4 cut(s)	51, 148, 384, 430
BstEII	GGTNACC	1 cut(s)	698
BstF5I	GGATG	2 cut(s)	113, 1109
BstFNI	CGCG	3 cut(s)	203, 1132, 1134
BstH2I	RGCGCY	1 cut(s)	656
BstHHI	GCGC	3 cut(s)	655, 1134, 1136
BstKTI	GATC	7 cut(s)	124, 130, 262, 287, 313, 625, 1088
BstMAI	GTCTC	2 cut(s)	104, 987
BstMBI	GATC	7 cut(s)	121, 127, 259, 284, 310, 622, 1085
BstMCI	CGRYCG	1 cut(s)	523
BstPI	GGTNACC	1 cut(s)	698
BstSCI	CCNGG	2 cut(s)	78, 517
BstSFI	CTRYAG	1 cut(s)	1066
BstUI	CGCG	3 cut(s)	203, 1132, 1134
BstV1I	GCAGC	9 cut(s)	76, 112, 175, 196, 205, 292, 748, 972, 1042
BstV2I	GAAGAC	1 cut(s)	53
BstXI	CCANNNNNNTGG	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	520
BsuRI	GGCC	4 cut(s)	86, 154, 389, 522
BtgI	CCRYGG	4 cut(s)	51, 148, 384, 430
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	2 cut(s)	113, 1109
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 464, 633, 738
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	2 cut(s)	648, 1134
CfoI	GCGC	3 cut(s)	655, 1134, 1136
Cfr13I	GGNCC	3 cut(s)	57, 152, 564
Csp6I	GTAC	3 cut(s)	199, 713, 903
CspCI	CAANNNNNGTGG	4 cut(s)	997, 1032, 1051, 1086
CviAII	CATG	3 cut(s)	346, 385, 413
CviQI	GTAC	3 cut(s)	199, 713, 903
DdeI	CTNAG	7 cut(s)	64, 251, 356, 372, 636, 819, 980
DpnI	GATC	7 cut(s)	123, 129, 261, 286, 312, 624, 1087
DpnII	GATC	7 cut(s)	121, 127, 259, 284, 310, 622, 1085
DrdI	GACNNNNNNGTC	1 cut(s)	55
DseDI	GACNNNNNNGTC	1 cut(s)	55
EaeI	YGGCCR	2 cut(s)	387, 520
EagI	CGGCCG	1 cut(s)	520
EciI	GGCGGA	3 cut(s)	49, 110, 130
EclXI	CGGCCG	1 cut(s)	520
Eco130I	CCWWGG	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	57, 564
Eco52I	CGGCCG	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	885
Eco88I	CYCGRG	1 cut(s)	20
Eco91I	GGTNACC	1 cut(s)	698
EcoO65I	GGTNACC	1 cut(s)	698
EcoRI	GAATTC	2 cut(s)	591, 706
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	3 cut(s)	349, 388, 416
FaiI	YATR	8 cut(s)	182, 347, 386, 414, 609, 896, 898, 1151
FalI	AAGNNNNNCTT	2 cut(s)	748, 780
FaqI	GGGAC	4 cut(s)	341, 356, 507, 793
FatI	CATG	3 cut(s)	345, 384, 412
FauI	CCCGC	1 cut(s)	437
FbaI	TGATCA	1 cut(s)	622
FokI	GGATG	2 cut(s)	100, 1096
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	3 cut(s)	654, 1133, 1135
GsaI	CCCAGC	4 cut(s)	33, 580, 780, 992
HaeII	RGCGCY	1 cut(s)	656
HaeIII	GGCC	4 cut(s)	86, 154, 389, 522
HapII	CCGG	2 cut(s)	80, 519
HhaI	GCGC	3 cut(s)	655, 1134, 1136
Hin1II	CATG	3 cut(s)	349, 388, 416
Hin6I	GCGC	3 cut(s)	653, 1132, 1134
HinP1I	GCGC	3 cut(s)	653, 1132, 1134
HincII	GTYRAC	3 cut(s)	454, 682, 841
HindII	GTYRAC	3 cut(s)	454, 682, 841
HinfI	GANTC	7 cut(s)	16, 70, 435, 690, 769, 792, 953
HpaI	GTTAAC	1 cut(s)	841
HpaII	CCGG	2 cut(s)	80, 519
HphI	GGTGA	5 cut(s)	266, 305, 451, 710, 992
Hpy166II	GTNNAC	4 cut(s)	454, 682, 738, 841
Hpy188I	TCNGA	6 cut(s)	75, 109, 597, 616, 861, 981
Hpy188III	TCNNGA	4 cut(s)	20, 22, 125, 341
Hpy8I	GTNNAC	4 cut(s)	454, 682, 738, 841
Hpy99I	CGWCG	2 cut(s)	323, 528
HpyAV	CCTTC	5 cut(s)	417, 743, 825, 913, 1154
HpyCH4IV	ACGT	1 cut(s)	874
HpyCH4V	TGCA	8 cut(s)	184, 271, 475, 755, 833, 887, 1019, 1049
HpyF3I	CTNAG	7 cut(s)	64, 251, 356, 372, 636, 819, 980
HpySE526I	ACGT	1 cut(s)	874
Hsp92II	CATG	3 cut(s)	349, 388, 416
HspAI	GCGC	3 cut(s)	653, 1132, 1134
Ksp22I	TGATCA	1 cut(s)	622
KspAI	GTTAAC	1 cut(s)	841
Kzo9I	GATC	7 cut(s)	121, 127, 259, 284, 310, 622, 1085
LmnI	GCTCC	4 cut(s)	97, 352, 361, 1141
Lsp1109I	GCAGC	9 cut(s)	76, 112, 175, 196, 205, 292, 748, 972, 1042
LweI	GCATC	2 cut(s)	280, 462
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	874
MaeIII	GTNAC	6 cut(s)	215, 221, 482, 631, 661, 698
MalI	GATC	7 cut(s)	123, 129, 261, 286, 312, 624, 1087
MboI	GATC	7 cut(s)	121, 127, 259, 284, 310, 622, 1085
MboII	GAAGA	4 cut(s)	58, 596, 758, 878
MfeI	CAATTG	1 cut(s)	1050
MluCI	AATT	4 cut(s)	552, 591, 706, 1050
MlyI	GAGTC	1 cut(s)	778
MmeI	TCCRAC	2 cut(s)	141, 312
MseI	TTAA	4 cut(s)	501, 555, 840, 939
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	4 cut(s)	89, 166, 250, 646
MspI	CCGG	2 cut(s)	80, 519
MspR9I	CCNGG	2 cut(s)	80, 519
MunI	CAATTG	1 cut(s)	1050
Mva1269I	GAATGC	1 cut(s)	31
MvnI	CGCG	3 cut(s)	203, 1132, 1134
NciI	CCSGG	2 cut(s)	80, 519
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	7 cut(s)	121, 127, 259, 284, 310, 622, 1085
NlaIII	CATG	3 cut(s)	349, 388, 416
NlaIV	GGNNCC	2 cut(s)	58, 77
NmeAIII	GCCGAG	1 cut(s)	415
NmuCI	GTSAC	2 cut(s)	631, 698
OliI	CACNNNNGTG	1 cut(s)	321
PaeR7I	CTCGAG	1 cut(s)	20
PauI	GCGCGC	1 cut(s)	1132
PctI	GAATGC	1 cut(s)	31
PfeI	GAWTC	6 cut(s)	16, 70, 435, 690, 792, 953
PleI	GAGTC	1 cut(s)	777
PpsI	GAGTC	1 cut(s)	777
PspEI	GGTNACC	1 cut(s)	698
PspFI	CCCAGC	4 cut(s)	29, 576, 776, 988
PspN4I	GGNNCC	2 cut(s)	58, 77
PspPI	GGNCC	3 cut(s)	57, 152, 564
PteI	GCGCGC	1 cut(s)	1132
PvuII	CAGCTG	2 cut(s)	250, 646
RsaI	GTAC	3 cut(s)	200, 714, 904
RsaNI	GTAC	3 cut(s)	199, 713, 903
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	4 cut(s)	501, 555, 840, 939
Sau3AI	GATC	7 cut(s)	121, 127, 259, 284, 310, 622, 1085
Sau96I	GGNCC	3 cut(s)	57, 152, 564
SchI	GAGTC	1 cut(s)	778
ScrFI	CCNGG	2 cut(s)	80, 519
SfaNI	GCATC	2 cut(s)	280, 462
SfcI	CTRYAG	1 cut(s)	1066
Sfr274I	CTCGAG	1 cut(s)	20
SinI	GGWCC	2 cut(s)	57, 564
SlaI	CTCGAG	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	3 cut(s)	20, 170, 927
SmoI	CTYRAG	3 cut(s)	20, 170, 927
Sse9I	AATT	4 cut(s)	552, 591, 706, 1050
SspI	AATATT	1 cut(s)	910
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	78, 517
StyI	CCWWGG	1 cut(s)	384
TaiI	ACGT	1 cut(s)	877
TaqI	TCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	552, 591, 706, 1050
TatI	WGTACW	2 cut(s)	712, 902
TauI	GCSGC	6 cut(s)	89, 95, 169, 179, 309, 653
TfiI	GAWTC	6 cut(s)	16, 70, 435, 690, 792, 953
Tru1I	TTAA	4 cut(s)	501, 555, 840, 939
Tru9I	TTAA	4 cut(s)	501, 555, 840, 939
TscAI	CASTG	4 cut(s)	12, 471, 640, 745
TseFI	GTSAC	2 cut(s)	631, 698
TseI	GCWGC	9 cut(s)	89, 100, 163, 184, 193, 280, 761, 985, 1055
Tsp45I	GTSAC	2 cut(s)	631, 698
TspDTI	ATGAA	3 cut(s)	314, 759, 885
TspGWI	ACGGA	3 cut(s)	447, 541, 707
TspRI	CASTG	4 cut(s)	12, 471, 640, 745
VpaK11BI	GGWCC	2 cut(s)	57, 564
XapI	RAATTY	2 cut(s)	591, 706
XhoI	CTCGAG	1 cut(s)	20
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.