Forkhead-associated domain-containing protein FHA domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G34355 AT1G34355 AT1G34355 |
| fragaria_vesca | FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 |
| malus_domestica | MD05G1040500.v1.1 MD10G1046600.v1.1 |
| prunus_persica | Prupe.8G054200_v2.0.a1 |
| pyrus_communis | pycom05g03310 pycom10g03280 pycom10g03290 |
| rosa_chinensis | RchiOBHm_Chr6g0272171 |
| rosa_laevigata | RLG00000013694 |
| rosa_multiflora | Rmu_sc0005748.1_g000012 |
| rosa_roxburghii | Rroxscaffold_7G00196530 |
| rosa_rugosa | Rorug06G0066700 |
| rosa_samantha | Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600 |
| rosa_wichuraiana | Rw6G015820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1073 |
| AccB1I | GGYRCC | 2 cut(s) | 3541, 3565 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1598 |
| AccBSI | CCGCTC | 2 cut(s) | 267, 3562 |
| AccI | GTMKAC | 1 cut(s) | 485 |
| AccII | CGCG | 1 cut(s) | 123 |
| AciI | CCGC | 3 cut(s) | 265, 899, 3562 |
| AclI | AACGTT | 1 cut(s) | 3376 |
| AclWI | GGATC | 9 cut(s) | 52, 309, 342, 416, 631, 1093, 1445, 2679, 3908 |
| AcoI | YGGCCR | 2 cut(s) | 2132, 4420 |
| AcsI | RAATTY | 8 cut(s) | 1721, 1956, 1994, 2073, 2187, 2225, 2450, 3386 |
| AcuI | CTGAAG | 5 cut(s) | 1956, 2124, 3285, 3545, 3870 |
| AcyI | GRCGYC | 2 cut(s) | 1070, 3566 |
| AfaI | GTAC | 6 cut(s) | 835, 1615, 2962, 3804, 4319, 4352 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1598, 1615, 2908, 3340 |
| AflII | CTTAAG | 1 cut(s) | 3005 |
| AflIII | ACRYGT | 2 cut(s) | 3431, 4302 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3748 |
| AjiI | CACGTC | 4 cut(s) | 609, 856, 3220, 4303 |
| AjnI | CCWGG | 2 cut(s) | 2667, 3504 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2709, 2741 |
| AleI | CACNNNNGTG | 1 cut(s) | 772 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 382, 414, 615, 647 |
| Alw21I | GWGCWC | 4 cut(s) | 2129, 3239, 4099, 4265 |
| AlwI | GGATC | 9 cut(s) | 52, 309, 342, 416, 631, 1093, 1445, 2679, 3908 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1361, 2552 |
| Ama87I | CYCGRG | 3 cut(s) | 2205, 2424, 2620 |
| AoxI | GGCC | 4 cut(s) | 2132, 2428, 2823, 4420 |
| ApoI | RAATTY | 8 cut(s) | 1721, 1956, 1994, 2073, 2187, 2225, 2450, 3386 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 446, 478, 3703, 3735, 4270, 4302 |
| AseI | ATTAAT | 1 cut(s) | 1506 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 104, 148, 186, 290, 1536 |
| AspA2I | CCTAGG | 1 cut(s) | 2215 |
| AspLEI | GCGC | 3 cut(s) | 89, 3568, 3843 |
| AspS9I | GGNCC | 2 cut(s) | 3015, 3711 |
| AsuC2I | CCSGG | 1 cut(s) | 2909 |
| AvaI | CYCGRG | 3 cut(s) | 2205, 2424, 2620 |
| AvaII | GGWCC | 2 cut(s) | 3015, 3711 |
| AvrII | CCTAGG | 1 cut(s) | 2215 |
| AxyI | CCTNAGG | 1 cut(s) | 1645 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 642, 675 |
| BalI | TGGCCA | 2 cut(s) | 2134, 4422 |
| BanI | GGYRCC | 2 cut(s) | 3541, 3565 |
| BanII | GRGCYC | 2 cut(s) | 1898, 3239 |
| BauI | CACGAG | 1 cut(s) | 1526 |
| BbsI | GAAGAC | 7 cut(s) | 59, 2094, 2112, 2325, 2480, 2803, 2865 |
| Bbv12I | GWGCWC | 4 cut(s) | 2129, 3239, 4099, 4265 |
| BccI | CCATC | 7 cut(s) | 19, 917, 952, 1379, 1414, 1622, 3466 |
| BceAI | ACGGC | 3 cut(s) | 100, 423, 4281 |
| BciT130I | CCWGG | 2 cut(s) | 2669, 3506 |
| BciVI | GTATCC | 5 cut(s) | 643, 1105, 2842, 3397, 3718 |
| BcnI | CCSGG | 1 cut(s) | 2909 |
| BfmI | CTRYAG | 8 cut(s) | 412, 798, 891, 1260, 1353, 1671, 1950, 3764 |
| BfoI | RGCGCY | 2 cut(s) | 90, 3569 |
| BfrI | CTTAAG | 1 cut(s) | 3005 |
| BfuI | GTATCC | 5 cut(s) | 643, 1105, 2842, 3397, 3718 |
| BglII | AGATCT | 4 cut(s) | 1051, 2738, 3147, 3493 |
| BlnI | CCTAGG | 1 cut(s) | 2215 |
| BlpI | GCTNAGC | 3 cut(s) | 1941, 2385, 3558 |
| Bme1390I | CCNGG | 3 cut(s) | 2669, 2909, 3506 |
| Bme18I | GGWCC | 2 cut(s) | 3015, 3711 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3748 |
| BmeT110I | CYCGRG | 3 cut(s) | 2205, 2424, 2620 |
| BmgBI | CACGTC | 4 cut(s) | 609, 856, 3220, 4303 |
| BmgT120I | GGNCC | 2 cut(s) | 3015, 3711 |
| BmiI | GGNNCC | 7 cut(s) | 151, 1143, 3141, 3415, 3486, 3543, 3567 |
| BmrFI | CCNGG | 3 cut(s) | 2669, 2909, 3506 |
| BmrI | ACTGGG | 3 cut(s) | 2148, 3057, 3991 |
| BmsI | GCATC | 8 cut(s) | 469, 604, 877, 943, 1160, 1989, 3644, 3679 |
| BmuI | ACTGGG | 3 cut(s) | 2148, 3057, 3991 |
| BpiI | GAAGAC | 7 cut(s) | 59, 2094, 2112, 2325, 2480, 2803, 2865 |
| BpmI | CTGGAG | 1 cut(s) | 1986 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2172, 2759 |
| Bpu1102I | GCTNAGC | 3 cut(s) | 1941, 2385, 3558 |
| BpuEI | CTTGAG | 8 cut(s) | 80, 1197, 1798, 1882, 2326, 2941, 3767, 4145 |
| BpuMI | CCSGG | 1 cut(s) | 2909 |
| BsaAI | YACGTR | 2 cut(s) | 654, 3434 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1050, 1056 |
| BsaHI | GRCGYC | 2 cut(s) | 1070, 3566 |
| BsaI | GGTCTC | 3 cut(s) | 2216, 2344, 3785 |
| BsaJI | CCNNGG | 7 cut(s) | 2215, 2425, 2520, 2826, 2907, 3505, 4173 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2347, 2377 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1598, 1615, 2908, 3340 |
| Bse21I | CCTNAGG | 1 cut(s) | 1645 |
| Bse3DI | GCAATG | 2 cut(s) | 2290, 2515 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1050, 1056 |
| BseBI | CCWGG | 2 cut(s) | 2669, 3506 |
| BseDI | CCNNGG | 7 cut(s) | 2215, 2425, 2520, 2826, 2907, 3505, 4173 |
| BseGI | GGATG | 7 cut(s) | 205, 649, 790, 907, 1069, 1425, 1453 |
| BseJI | GATNNNNATC | 2 cut(s) | 1050, 1056 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1598, 1615, 2908, 3340 |
| BseMI | GCAATG | 2 cut(s) | 2290, 2515 |
| BseRI | GAGGAG | 7 cut(s) | 44, 933, 1395, 3406, 3409, 3728, 4374 |
| BsgI | GTGCAG | 2 cut(s) | 3147, 4392 |
| Bsh1236I | CGCG | 1 cut(s) | 123 |
| Bsh1285I | CGRYCG | 2 cut(s) | 202, 4327 |
| BshFI | GGCC | 4 cut(s) | 2134, 2430, 2825, 4422 |
| BshNI | GGYRCC | 2 cut(s) | 3541, 3565 |
| BsiEI | CGRYCG | 2 cut(s) | 202, 4327 |
| BsiHKAI | GWGCWC | 4 cut(s) | 2129, 3239, 4099, 4265 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2205, 2424, 2620 |
| BsiSI | CCGG | 3 cut(s) | 47, 137, 2909 |
| BslFI | GGGAC | 5 cut(s) | 334, 791, 1079, 1253, 3802 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1598, 1615, 2908, 3340 |
| BsmBI | CGTCTC | 2 cut(s) | 696, 2167 |
| BsmFI | GGGAC | 5 cut(s) | 334, 791, 1079, 1253, 3802 |
| BsmI | GAATGC | 4 cut(s) | 522, 3308, 3663, 4016 |
| BsnI | GGCC | 4 cut(s) | 2134, 2430, 2825, 4422 |
| Bso31I | GGTCTC | 3 cut(s) | 2216, 2344, 3785 |
| BsoBI | CYCGRG | 3 cut(s) | 2205, 2424, 2620 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1898, 2129, 3239, 4099, 4265 |
| Bsp1720I | GCTNAGC | 3 cut(s) | 1941, 2385, 3558 |
| Bsp19I | CCATGG | 1 cut(s) | 4173 |
| Bsp68I | TCGCGA | 1 cut(s) | 123 |
| BspACI | CCGC | 3 cut(s) | 265, 899, 3562 |
| BspANI | GGCC | 4 cut(s) | 2134, 2430, 2825, 4422 |
| BspFNI | CGCG | 1 cut(s) | 123 |
| BspHI | TCATGA | 1 cut(s) | 2314 |
| BspLI | GGNNCC | 7 cut(s) | 151, 1143, 3141, 3415, 3486, 3543, 3567 |
| BspMAI | CTGCAG | 5 cut(s) | 895, 1264, 1357, 1675, 3768 |
| BspPI | GGATC | 9 cut(s) | 52, 309, 342, 416, 631, 1093, 1445, 2679, 3908 |
| BspQI | GCTCTTC | 1 cut(s) | 4104 |
| BspT107I | GGYRCC | 2 cut(s) | 3541, 3565 |
| BspTI | CTTAAG | 1 cut(s) | 3005 |
| BspTNI | GGTCTC | 3 cut(s) | 2216, 2344, 3785 |
| BsrBI | CCGCTC | 2 cut(s) | 267, 3562 |
| BsrDI | GCAATG | 2 cut(s) | 2290, 2515 |
| BssECI | CCNNGG | 7 cut(s) | 2215, 2425, 2520, 2826, 2907, 3505, 4173 |
| BssNI | GRCGYC | 2 cut(s) | 1070, 3566 |
| BssSI | CACGAG | 1 cut(s) | 1526 |
| BssT1I | CCWWGG | 4 cut(s) | 2215, 2520, 2826, 4173 |
| Bst2BI | CACGAG | 1 cut(s) | 1526 |
| Bst2UI | CCWGG | 2 cut(s) | 2669, 3506 |
| Bst6I | CTCTTC | 9 cut(s) | 9, 177, 280, 296, 501, 1785, 1869, 3679, 4104 |
| BstACI | GRCGYC | 2 cut(s) | 1070, 3566 |
| BstAFI | CTTAAG | 1 cut(s) | 3005 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 43 |
| BstBAI | YACGTR | 2 cut(s) | 654, 3434 |
| BstC8I | GCNNGC | 4 cut(s) | 932, 2421, 2538, 3564 |
| BstDSI | CCRYGG | 1 cut(s) | 4173 |
| BstF5I | GGATG | 7 cut(s) | 205, 649, 790, 907, 1069, 1425, 1453 |
| BstFNI | CGCG | 1 cut(s) | 123 |
| BstH2I | RGCGCY | 2 cut(s) | 90, 3569 |
| BstHHI | GCGC | 3 cut(s) | 89, 3568, 3843 |
| BstMCI | CGRYCG | 2 cut(s) | 202, 4327 |
| BstNI | CCWGG | 2 cut(s) | 2669, 3506 |
| BstNSI | RCATGY | 3 cut(s) | 2921, 2967, 3370 |
| BstSCI | CCNGG | 3 cut(s) | 2667, 2907, 3504 |
| BstSFI | CTRYAG | 8 cut(s) | 412, 798, 891, 1260, 1353, 1671, 1950, 3764 |
| BstSNI | TACGTA | 1 cut(s) | 654 |
| BstUI | CGCG | 1 cut(s) | 123 |
| BstV2I | GAAGAC | 7 cut(s) | 59, 2094, 2112, 2325, 2480, 2803, 2865 |
| BstX2I | RGATCY | 7 cut(s) | 301, 334, 408, 1051, 2738, 3147, 3493 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 3721, 4004 |
| BstYI | RGATCY | 7 cut(s) | 301, 334, 408, 1051, 2738, 3147, 3493 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1645 |
| BsuI | GTATCC | 5 cut(s) | 643, 1105, 2842, 3397, 3718 |
| BsuRI | GGCC | 4 cut(s) | 2134, 2430, 2825, 4422 |
| BtgI | CCRYGG | 1 cut(s) | 4173 |
| BtgZI | GCGATG | 3 cut(s) | 177, 1386, 1464 |
| BtrI | CACGTC | 4 cut(s) | 609, 856, 3220, 4303 |
| BtsCI | GGATG | 7 cut(s) | 205, 649, 790, 907, 1069, 1425, 1453 |
| BtsI | GCAGTG | 1 cut(s) | 3761 |
| BtsIMutI | CAGTG | 9 cut(s) | 153, 421, 975, 1714, 2661, 2698, 3615, 3761, 4033 |
| BtuMI | TCGCGA | 1 cut(s) | 123 |
| Cac8I | GCNNGC | 4 cut(s) | 932, 2421, 2538, 3564 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1361, 2552 |
| CciI | TCATGA | 1 cut(s) | 2314 |
| CfoI | GCGC | 3 cut(s) | 89, 3568, 3843 |
| Cfr13I | GGNCC | 2 cut(s) | 3015, 3711 |
| CseI | GACGC | 4 cut(s) | 471, 678, 715, 1201 |
| Csp6I | GTAC | 6 cut(s) | 834, 1614, 2961, 3803, 4318, 4351 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 4412 |
| CviQI | GTAC | 6 cut(s) | 834, 1614, 2961, 3803, 4318, 4351 |
| DinI | GGCGCC | 1 cut(s) | 3567 |
| DraI | TTTAAA | 1 cut(s) | 3243 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3748 |
| EaeI | YGGCCR | 2 cut(s) | 2132, 4420 |
| Eam1104I | CTCTTC | 9 cut(s) | 9, 177, 280, 296, 501, 1785, 1869, 3679, 4104 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3748 |
| EarI | CTCTTC | 9 cut(s) | 9, 177, 280, 296, 501, 1785, 1869, 3679, 4104 |
| EciI | GGCGGA | 1 cut(s) | 914 |
| Ecl136II | GAGCTC | 1 cut(s) | 3237 |
| Eco105I | TACGTA | 1 cut(s) | 654 |
| Eco130I | CCWWGG | 4 cut(s) | 2215, 2520, 2826, 4173 |
| Eco147I | AGGCCT | 1 cut(s) | 2430 |
| Eco24I | GRGCYC | 2 cut(s) | 1898, 3239 |
| Eco31I | GGTCTC | 3 cut(s) | 2216, 2344, 3785 |
| Eco32I | GATATC | 2 cut(s) | 948, 1410 |
| Eco47I | GGWCC | 2 cut(s) | 3015, 3711 |
| Eco53kI | GAGCTC | 1 cut(s) | 3237 |
| Eco57I | CTGAAG | 5 cut(s) | 1956, 2124, 3285, 3545, 3870 |
| Eco81I | CCTNAGG | 1 cut(s) | 1645 |
| Eco88I | CYCGRG | 3 cut(s) | 2205, 2424, 2620 |
| EcoICRI | GAGCTC | 1 cut(s) | 3237 |
| EcoRI | GAATTC | 3 cut(s) | 1994, 2225, 2450 |
| EcoRII | CCWGG | 2 cut(s) | 2667, 3504 |
| EcoRV | GATATC | 2 cut(s) | 948, 1410 |
| EcoT14I | CCWWGG | 4 cut(s) | 2215, 2520, 2826, 4173 |
| EcoT38I | GRGCYC | 2 cut(s) | 1898, 3239 |
| EgeI | GGCGCC | 1 cut(s) | 3567 |
| EheI | GGCGCC | 1 cut(s) | 3567 |
| ErhI | CCWWGG | 4 cut(s) | 2215, 2520, 2826, 4173 |
| Esp3I | CGTCTC | 2 cut(s) | 696, 2167 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 89, 121, 764, 796, 2565, 2597 |
| FaqI | GGGAC | 5 cut(s) | 334, 791, 1079, 1253, 3802 |
| FauI | CCCGC | 1 cut(s) | 3555 |
| FauNDI | CATATG | 1 cut(s) | 3189 |
| FblI | GTMKAC | 1 cut(s) | 485 |
| FokI | GGATG | 7 cut(s) | 192, 656, 797, 914, 1076, 1432, 1460 |
| FriOI | GRGCYC | 2 cut(s) | 1898, 3239 |
| GlaI | GCGC | 3 cut(s) | 88, 3567, 3842 |
| GsuI | CTGGAG | 1 cut(s) | 1986 |
| HaeII | RGCGCY | 2 cut(s) | 90, 3569 |
| HaeIII | GGCC | 4 cut(s) | 2134, 2430, 2825, 4422 |
| HapII | CCGG | 3 cut(s) | 47, 137, 2909 |
| HgaI | GACGC | 4 cut(s) | 471, 678, 715, 1201 |
| HhaI | GCGC | 3 cut(s) | 89, 3568, 3843 |
| Hin1I | GRCGYC | 2 cut(s) | 1070, 3566 |
| Hin6I | GCGC | 3 cut(s) | 87, 3566, 3841 |
| HinP1I | GCGC | 3 cut(s) | 87, 3566, 3841 |
| HincII | GTYRAC | 1 cut(s) | 4347 |
| HindII | GTYRAC | 1 cut(s) | 4347 |
| HindIII | AAGCTT | 1 cut(s) | 3245 |
| HpaII | CCGG | 3 cut(s) | 47, 137, 2909 |
| Hpy99I | CGWCG | 4 cut(s) | 136, 197, 200, 857 |
| HpyAV | CCTTC | 7 cut(s) | 368, 608, 1070, 1703, 1939, 2646, 2829 |
| Hsp92I | GRCGYC | 2 cut(s) | 1070, 3566 |
| HspAI | GCGC | 3 cut(s) | 87, 3566, 3841 |
| KasI | GGCGCC | 1 cut(s) | 3565 |
| LguI | GCTCTTC | 1 cut(s) | 4104 |
| LmnI | GCTCC | 5 cut(s) | 496, 1610, 1618, 3419, 4407 |
| LweI | GCATC | 8 cut(s) | 469, 604, 877, 943, 1160, 1989, 3644, 3679 |
| MbiI | CCGCTC | 2 cut(s) | 267, 3562 |
| MfeI | CAATTG | 1 cut(s) | 3969 |
| MflI | RGATCY | 7 cut(s) | 301, 334, 408, 1051, 2738, 3147, 3493 |
| MhlI | GDGCHC | 5 cut(s) | 1898, 2129, 3239, 4099, 4265 |
| MlsI | TGGCCA | 2 cut(s) | 2134, 4422 |
| MluNI | TGGCCA | 2 cut(s) | 2134, 4422 |
| Mly113I | GGCGCC | 1 cut(s) | 3566 |
| MmeI | TCCRAC | 3 cut(s) | 474, 3974, 4091 |
| Mox20I | TGGCCA | 2 cut(s) | 2134, 4422 |
| MroXI | GAANNNNTTC | 5 cut(s) | 104, 148, 186, 290, 1536 |
| MscI | TGGCCA | 2 cut(s) | 2134, 4422 |
| MslI | CAYNNNNRTG | 7 cut(s) | 357, 600, 772, 939, 1062, 1401, 3123 |
| Msp20I | TGGCCA | 2 cut(s) | 2134, 4422 |
| MspA1I | CMGCKG | 2 cut(s) | 1284, 4376 |
| MspCI | CTTAAG | 1 cut(s) | 3005 |
| MspI | CCGG | 3 cut(s) | 47, 137, 2909 |
| MspR9I | CCNGG | 3 cut(s) | 2669, 2909, 3506 |
| MunI | CAATTG | 1 cut(s) | 3969 |
| Mva1269I | GAATGC | 4 cut(s) | 522, 3308, 3663, 4016 |
| MvaI | CCWGG | 2 cut(s) | 2669, 3506 |
| MvnI | CGCG | 1 cut(s) | 123 |
| NarI | GGCGCC | 1 cut(s) | 3566 |
| NciI | CCSGG | 1 cut(s) | 2909 |
| NcoI | CCATGG | 1 cut(s) | 4173 |
| NdeI | CATATG | 1 cut(s) | 3189 |
| NlaIV | GGNNCC | 7 cut(s) | 151, 1143, 3141, 3415, 3486, 3543, 3567 |
| NruI | TCGCGA | 1 cut(s) | 123 |
| NspI | RCATGY | 3 cut(s) | 2921, 2967, 3370 |
| OliI | CACNNNNGTG | 1 cut(s) | 772 |
| PaeR7I | CTCGAG | 2 cut(s) | 2205, 2620 |
| PagI | TCATGA | 1 cut(s) | 2314 |
| PceI | AGGCCT | 1 cut(s) | 2430 |
| PciSI | GCTCTTC | 1 cut(s) | 4104 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 659, 4131 |
| PctI | GAATGC | 4 cut(s) | 522, 3308, 3663, 4016 |
| PdmI | GAANNNNTTC | 5 cut(s) | 104, 148, 186, 290, 1536 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1598 |
| PluTI | GGCGCC | 1 cut(s) | 3569 |
| Ppu21I | YACGTR | 2 cut(s) | 654, 3434 |
| PshBI | ATTAAT | 1 cut(s) | 1506 |
| Psp124BI | GAGCTC | 1 cut(s) | 3239 |
| Psp1406I | AACGTT | 1 cut(s) | 3376 |
| Psp6I | CCWGG | 2 cut(s) | 2667, 3504 |
| PspGI | CCWGG | 2 cut(s) | 2667, 3504 |
| PspN4I | GGNNCC | 7 cut(s) | 151, 1143, 3141, 3415, 3486, 3543, 3567 |
| PspPI | GGNCC | 2 cut(s) | 3015, 3711 |
| PspXI | VCTCGAGB | 2 cut(s) | 2205, 2620 |
| PstI | CTGCAG | 5 cut(s) | 895, 1264, 1357, 1675, 3768 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1361, 2552 |
| PsuI | RGATCY | 7 cut(s) | 301, 334, 408, 1051, 2738, 3147, 3493 |
| PvuII | CAGCTG | 2 cut(s) | 1284, 4376 |
| RruI | TCGCGA | 1 cut(s) | 123 |
| RsaI | GTAC | 6 cut(s) | 835, 1615, 2962, 3804, 4319, 4352 |
| RsaNI | GTAC | 6 cut(s) | 834, 1614, 2961, 3803, 4318, 4351 |
| RseI | CAYNNNNRTG | 7 cut(s) | 357, 600, 772, 939, 1062, 1401, 3123 |
| SacI | GAGCTC | 1 cut(s) | 3239 |
| SapI | GCTCTTC | 1 cut(s) | 4104 |
| Sau96I | GGNCC | 2 cut(s) | 3015, 3711 |
| ScrFI | CCNGG | 3 cut(s) | 2669, 2909, 3506 |
| SduI | GDGCHC | 5 cut(s) | 1898, 2129, 3239, 4099, 4265 |
| SfaNI | GCATC | 8 cut(s) | 469, 604, 877, 943, 1160, 1989, 3644, 3679 |
| SfcI | CTRYAG | 8 cut(s) | 412, 798, 891, 1260, 1353, 1671, 1950, 3764 |
| SfoI | GGCGCC | 1 cut(s) | 3567 |
| Sfr274I | CTCGAG | 2 cut(s) | 2205, 2620 |
| SinI | GGWCC | 2 cut(s) | 3015, 3711 |
| SlaI | CTCGAG | 2 cut(s) | 2205, 2620 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 357, 600, 772, 939, 1062, 1401, 3123 |
| SnaBI | TACGTA | 1 cut(s) | 654 |
| SseBI | AGGCCT | 1 cut(s) | 2430 |
| SsiI | CCGC | 3 cut(s) | 265, 899, 3562 |
| SspDI | GGCGCC | 1 cut(s) | 3565 |
| SspI | AATATT | 2 cut(s) | 2750, 3652 |
| SstI | GAGCTC | 1 cut(s) | 3239 |
| StuI | AGGCCT | 1 cut(s) | 2430 |
| StyD4I | CCNGG | 3 cut(s) | 2667, 2907, 3504 |
| StyI | CCWWGG | 4 cut(s) | 2215, 2520, 2826, 4173 |
| TaqI | TCGA | 9 cut(s) | 269, 345, 726, 2206, 2621, 3741, 3903, 4089, 4108 |
| TaqII | GACCGA | 3 cut(s) | 188, 2492, 4341 |
| TatI | WGTACW | 1 cut(s) | 2960 |
| TscAI | CASTG | 9 cut(s) | 160, 428, 975, 1714, 2668, 2698, 3622, 3768, 4040 |
| TspGWI | ACGGA | 8 cut(s) | 314, 420, 450, 818, 1631, 2149, 3028, 4221 |
| TspRI | CASTG | 9 cut(s) | 160, 428, 975, 1714, 2668, 2698, 3622, 3768, 4040 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1598 |
| Vha464I | CTTAAG | 1 cut(s) | 3005 |
| VpaK11BI | GGWCC | 2 cut(s) | 3015, 3711 |
| VspI | ATTAAT | 1 cut(s) | 1506 |
| XapI | RAATTY | 8 cut(s) | 1721, 1956, 1994, 2073, 2187, 2225, 2450, 3386 |
| XbaI | TCTAGA | 3 cut(s) | 535, 598, 997 |
| XceI | RCATGY | 3 cut(s) | 2921, 2967, 3370 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1518 |
| XhoI | CTCGAG | 2 cut(s) | 2205, 2620 |
| XmaJI | CCTAGG | 1 cut(s) | 2215 |
| XmiI | GTMKAC | 1 cut(s) | 485 |
| XmnI | GAANNNNTTC | 5 cut(s) | 104, 148, 186, 290, 1536 |
| ZraI | GACGTC | 1 cut(s) | 1071 |