Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004743

Physical Location & Seq

Genomic Coordinates Forward (+)

35991366 .. 35995254

Gene Structure 3889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3198 bp

ATGGGCGACGAGAAAGCGAAAACAGTGGTTGAAGAAGAGCCCAAAATCCCAGTGTTCACAGTCCTTAAGAACGGAGCGATTCTCAAGAACATCTTCATCGTGAACAAACCCCCACCACCGCCACACTCCGAACCAATCTCGTCCGTCCATCAAGAAACCGAAGAAATCTTGATCGTCGGACGGCACCCCGACTGCAACATCGTGCTGACTCACCCCAGCGTCAGCAGATTCCACCTCCAAATCCTCTCTAATCCCTCCTCGCAGAAGCTTTCCCTCACCGATTTATCATCAGTCCATGGGACTTGGATCTCGGAGAAGAGGATTGAGCCAGGGGTTCGAGTAGAGCTGAGGCAAGGGGACACGCTCAGGGTTGGTGCTTCTAGCAGGCTCTACAGGCTTCACTGGATTCCTTTGAGCCACGCCTATGAACAAGACGCTCTCAGGGTTCTGAATTGTTTGCCACTTGAAAACGCTGAACCTGATTGTTCTGATATGAATTTTGAGGGTATGGAGTCTTTATTCTCTGATGAAAATATGGGATTAATTCAACCTCCGGTGCCTCGAGGAGGAGATCAAAGTGAACAAGGTGTTGACAACTCATCAGAAGATGATTGTCAAGAGAAAAAGATGTGTGAGATTCCAGAAATAGACCAGGTTGTGAAAATTTTGCCAATTGAAAAAGCAGAATTTGAATCTACTGAATCAATTTCTGAGGTTATAGAATCTCTAGTTTGTGGTGATAATTTGGGATTTATTGGGTGGAAGGAGATCCCATCAGCACCTCCAATGCCTGAAGAAGAAGACCGAAGTGAACATGGTGGTGAGAACTCGTCAAAAGTTGTTGGCCAAGAGAATGTGCTGTCAAGCTTCTGGGCCTTTGGAACTGAATCGGTGAACCTGTTTTTTCCTCTTGAAGACTCTACTTCTAATTCAAAGGAAAACCAGTACGTGCAACTAAATTGTGTCACAGGAGGTTCTGGAGTGGAAAAAGAAGGAGAAGCTTCTCCTACTGTTCAGATATTGGAAAAAGACCAGGGACAGAGTGATATCTCTGGTCTTTCAGCTGGACCTTTTGTGATAGAGAATTCATCCTTGCTGATCCGAGAAGTCCTTGCGGAGACGAAACATCAACAAGTTGAAGAAGTAAACCTGACCCCAGAAACAAAATCAGACTTGCTGGTTAATCTGGATGGCAAAAGCTCTATAACGAAAGACCATGGACAGGCTGATCAATTGTGTCTATCTTTTGAACCTCTTGAATATTCCGATGACAAGGAAGAGGGTGCCTATCCTGCTGTGCAAATACCTGGGAGAAATGCTGACCAAAGCTCTTTGAGCAAAGACCATGGACAGAATGATAATGTCTTGTGTCCTTCAGCTGGACCTTTTGTGACGGAGAACTCATCCTTGCTGGTTGGGGAAGTCCTTGGGGAGATCAACAATCAACAAGGTGAAGAAGAAAACCCATCACAAAAACCATCCTTGCTGGTTAACCTGGATTTTGAGATTTCTAATGAAATCAGATGTCTTGTTGATGAAAGACGAGGAGAAACTGAAGAGAGAAGTGTGTCACCCAAAAACCACCATGAAAAGAGGGATACCAAAACCATCTCCTCTGTGCCTCTTGTCACAGATTCTGCAGACTCATTTTCACCAGACAGGGATCTCTCAGAGATAATAGATGACAAAGAGAACCAAACTCCACTATCTATCTGCACTGCAGGAGGACAGCCTGAATCAGAATTCTGTAATAGCCCTCCCCTGAGATCCGAAGATAAGTCAATCTTTGGAGAAAGCATTTGGGAAAGAAGAGGTAAACCTGCTAGTGCCGTGAGGATTCAAACAGAGAGAAGCAGAGAAAGAACTACTGTGGAGGCAGGAATTGATAACGCTAATGAACAGGAGGTGGAAAGCTTTACTCCAGACAAGGAGAATCTAACACCAAATACTCTCTGTCTGAGGTCCTTGAAAAAGAAGTTTGAGGTAGAAATTAAGCTGGATGATACTCAAGAGGAGCAGGAAATCTTTACTCCTGACAAGGAAAACTTCACACCAAATACTCTTCGACTGAGGTCCTTGAAGAAGAAGGGTAAGCTAGAATTAACCGATTCCAAATCCCACAGATCATCCTTGTCGAAGCAAAACTTAAATTCCAATATCCCTAGAGAAGATCTGCTTGTATCGCCAGGGAAAGAGAACCAGAAATTGAAGGATATCCAAGAAAGAAAATCAGTAGAAACTACTACAGGGAATCAAGCAAGGCTGGAAAAAAAGTTGATGCTCACAAGCAGCACGAAAAGGATGCCGTTCCAATCACTACTTAAAAGTTCTGCAGGCAAGAACAGCAGATCAGAAGCTTCAGTCCCTGATGTAGCTACTAAAAGCAGCACATTTCTTGCTTGTAGTCGAACGAAGGAGAAGGTCAAGAATCCACTCTCTAATAAATTTGTTGGAGAAGGAAAGAGGGGCTGGACTATGGTTGCAGACACTAATACTCTCCTTCACAAGGAATCAAGGAAGTCATTGCAACTTCTACAAGGCCTTAAGGGGACTCATTTGATCATTCCAAGAATGGTTATACGGGAACTGGATTGCTTGAAACAGCGTGGCAGCCTGTTCAGAAAGAAAACAGAGGCTTGTTTGGTTCTGGAATGGATTGAAGAGTGTATGGTAAAAACAAATTGGTGGATCCATGTCCAGAGTTCACTGGAAGATGGAAGACTGATCGCTCCAACCCCTCCTGCTTCTCCGCAGTCTCTATTTAGTGAGGACAGTTGGGGACTTACTTCTGGAACAACAAGCTCGTTTCCCTTCTTAAGATGTAGGAGTTCTATGGAACTTGTATCGCCAGCAGCAGAAGATCATATACTTGATTGTGCTCTTTTACATAGAAAGATGAGCAATGAGGGACAACTTGTTCTTCTAAGTAGTGACATCACCCTGAAGATCAAAGCCATGGCAGAGGGTTTGATTTGTGAGACAGCTCAAGAATTCCATGAGAGTCTAGTGAACCCGTCTTCTGAGAGGTTTATGTGGGCTGGTAGCTGTCCCCGTGGGCGTACTTGGTCCTACTTAGCTGACATAGTTTTGGCAGAGAAGTATAATCGCTGCCAACTGAAGAAGTCATCAAGGGGGGAAGGCGCAAAAGGTCTCAAGCTTATTTTGCTCCACAATTCTCAGTATGGACATATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004540 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008995 GO:0009056 GO:0009057 GO:0009555 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016070 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019439 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0034641 GO:0034655 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0046483 GO:0046700 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA PIN_4

Protein Analysis

1066

Amino Acids

118.48

Weight (kDa)

5.16

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	54 - 126	1e-08	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	58 - 125	4.9e-17	FHA domain
PIN_4	PF13638	826 - 995	6.9e-20	PIN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34355 AT1G34355 AT1G34355
fragaria_vesca	FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232
malus_domestica	MD05G1040500.v1.1 MD10G1046600.v1.1
prunus_persica	Prupe.8G054200_v2.0.a1
pyrus_communis	pycom05g03310 pycom10g03280 pycom10g03290
rosa_chinensis	RchiOBHm_Chr6g0272171
rosa_laevigata	RLG00000013694
rosa_multiflora	Rmu_sc0005748.1_g000012
rosa_roxburghii	Rroxscaffold_7G00196530
rosa_rugosa	Rorug06G0066700
rosa_samantha	Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600
rosa_wichuraiana	Rw6G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	561
Acc36I	ACCTGC	1 cut(s)	1828
AccB1I	GGYRCC	3 cut(s)	183, 556, 1283
AciI	CCGC	3 cut(s)	119, 1115, 2750
AclWI	GGATC	7 cut(s)	314, 763, 1093, 1671, 1761, 2683, 2696
AcoI	YGGCCR	1 cut(s)	844
AcsI	RAATTY	8 cut(s)	496, 663, 686, 1084, 1742, 2149, 2444, 2990
AcuI	CTGAAG	6 cut(s)	813, 1359, 1575, 2343, 2963, 3137
AfaI	GTAC	2 cut(s)	947, 3061
AfiI	CCNNNNNNNGG	4 cut(s)	566, 1222, 1379, 2506
AflII	CTTAAG	3 cut(s)	65, 2543, 2815
AjnI	CCWGG	6 cut(s)	328, 651, 1032, 1306, 1494, 2185
AloI	GAACNNNNNNTCC	2 cut(s)	2901, 2933
Alw21I	GWGCWC	1 cut(s)	2881
Alw26I	GTCTC	4 cut(s)	1112, 2760, 2972, 3155
AlwI	GGATC	7 cut(s)	314, 763, 1093, 1671, 1761, 2683, 2696
AlwNI	CAGNNNCTG	2 cut(s)	1637, 2366
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	3 cut(s)	844, 873, 2539
ApeKI	GCWGC	5 cut(s)	2289, 2385, 2610, 2852, 3108
ApoI	RAATTY	8 cut(s)	496, 663, 686, 1084, 1742, 2149, 2444, 2990
AseI	ATTAAT	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	3143
AspS9I	GGNCC	6 cut(s)	873, 1067, 1382, 1962, 2073, 3066
AsuHPI	GGTGA	9 cut(s)	203, 268, 749, 833, 904, 1463, 1563, 1644, 2929
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	5 cut(s)	1067, 1382, 1962, 2073, 3066
BalI	TGGCCA	1 cut(s)	846
BamHI	GGATCC	1 cut(s)	2688
BanI	GGYRCC	3 cut(s)	183, 556, 1283
BanII	GRGCYC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	2850, 2882
BbsI	GAAGAC	4 cut(s)	807, 921, 2725, 3009
Bbv12I	GWGCWC	1 cut(s)	2881
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	5 cut(s)	2301, 2397, 2622, 2864, 3095
BccI	CCATC	7 cut(s)	156, 781, 1184, 1474, 1486, 1616, 2708
BceAI	ACGGC	3 cut(s)	197, 1814, 2290
BcgI	CGANNNNNNTGC	2 cut(s)	2284, 2318
BciT130I	CCWGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
BciVI	GTATCC	1 cut(s)	1591
BclI	TGATCA	2 cut(s)	1228, 2559
BcoDI	GTCTC	4 cut(s)	1112, 2760, 2972, 3155
BfaI	CTAG	6 cut(s)	381, 728, 1824, 2096, 2163, 3005
BfmI	CTRYAG	5 cut(s)	391, 1638, 1719, 2244, 2331
BfrI	CTTAAG	3 cut(s)	65, 2543, 2815
BfuAI	ACCTGC	1 cut(s)	1828
BfuI	GTATCC	1 cut(s)	1591
BglII	AGATCT	1 cut(s)	2170
BisI	GCNGC	5 cut(s)	2290, 2386, 2611, 2853, 3109
BlsI	GCNGC	5 cut(s)	2291, 2387, 2612, 2854, 3110
Bme1390I	CCNGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
Bme18I	GGWCC	5 cut(s)	1067, 1382, 1962, 2073, 3066
BmeT110I	CYCGRG	1 cut(s)	561
BmgT120I	GGNCC	6 cut(s)	873, 1067, 1382, 1962, 2073, 3066
BmiI	GGNNCC	4 cut(s)	185, 558, 1285, 2690
BmrFI	CCNGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
BmrI	ACTGGG	1 cut(s)	44
BmsI	GCATC	2 cut(s)	2268, 2292
BmuI	ACTGGG	1 cut(s)	44
BoxI	GACNNNNGTC	1 cut(s)	2071
BpiI	GAAGAC	4 cut(s)	807, 921, 2725, 3009
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	2 cut(s)	999, 1905
Bpu10I	CCTNAGC	2 cut(s)	347, 365
BpuEI	CTTGAG	4 cut(s)	68, 1992, 2970, 3137
BsaAI	YACGTR	1 cut(s)	949
BsaI	GGTCTC	1 cut(s)	3155
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	4 cut(s)	566, 1222, 1379, 2506
Bse1I	ACTGG	5 cut(s)	50, 407, 943, 2592, 2712
Bse3DI	GCAATG	2 cut(s)	2522, 2908
BseBI	CCWGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
BseGI	GGATG	7 cut(s)	1088, 1195, 1403, 1478, 2005, 2126, 2307
BseLI	CCNNNNNNNGG	4 cut(s)	566, 1222, 1379, 2506
BseMI	GCAATG	2 cut(s)	2522, 2908
BseNI	ACTGG	5 cut(s)	50, 407, 943, 2592, 2712
BseRI	GAGGAG	6 cut(s)	247, 579, 582, 1560, 1603, 2027
BseXI	GCAGC	5 cut(s)	2301, 2397, 2622, 2864, 3095
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	1 cut(s)	1699
BshFI	GGCC	3 cut(s)	846, 875, 2541
BshNI	GGYRCC	3 cut(s)	183, 556, 1283
BsiHKAI	GWGCWC	1 cut(s)	2881
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	8 cut(s)	313, 371, 1050, 2348, 2563, 2793, 2922, 3033
BslI	CCNNNNNNNGG	4 cut(s)	566, 1222, 1379, 2506
BsmAI	GTCTC	4 cut(s)	1112, 2760, 2972, 3155
BsmBI	CGTCTC	1 cut(s)	1112
BsmFI	GGGAC	8 cut(s)	313, 371, 1050, 2348, 2563, 2793, 2922, 3033
BsnI	GGCC	3 cut(s)	846, 875, 2541
Bso31I	GGTCTC	1 cut(s)	3155
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	42, 2881
Bsp19I	CCATGG	4 cut(s)	295, 1216, 1345, 2955
BspACI	CCGC	3 cut(s)	119, 1115, 2750
BspANI	GGCC	3 cut(s)	846, 875, 2541
BspLI	GGNNCC	4 cut(s)	185, 558, 1285, 2690
BspMAI	CTGCAG	3 cut(s)	1642, 1723, 2335
BspMI	ACCTGC	1 cut(s)	1828
BspPI	GGATC	7 cut(s)	314, 763, 1093, 1671, 1761, 2683, 2696
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	3 cut(s)	183, 556, 1283
BspTI	CTTAAG	3 cut(s)	65, 2543, 2815
BspTNI	GGTCTC	1 cut(s)	3155
BsrDI	GCAATG	2 cut(s)	2522, 2908
BsrI	ACTGG	5 cut(s)	50, 407, 943, 2592, 2712
BssT1I	CCWWGG	5 cut(s)	295, 1216, 1345, 1426, 2955
Bst2UI	CCWGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
Bst4CI	ACNGT	5 cut(s)	25, 61, 1012, 1870, 2774
Bst6I	CTCTTC	7 cut(s)	30, 311, 1272, 1551, 1804, 2067, 2655
BstAFI	CTTAAG	3 cut(s)	65, 2543, 2815
BstBAI	YACGTR	1 cut(s)	949
BstC8I	GCNNGC	3 cut(s)	386, 2335, 2850
BstDSI	CCRYGG	5 cut(s)	295, 1216, 1345, 2955, 3052
BstENI	CCTNNNNNAGG	2 cut(s)	564, 2504
BstF5I	GGATG	7 cut(s)	1088, 1195, 1403, 1478, 2005, 2126, 2307
BstHHI	GCGC	1 cut(s)	3143
BstMAI	GTCTC	4 cut(s)	1112, 2760, 2972, 3155
BstMWI	GCNNNNNNNGC	6 cut(s)	394, 1292, 1335, 2182, 2343, 3163
BstNI	CCWGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
BstPAI	GACNNNNGTC	1 cut(s)	2071
BstSCI	CCNGG	6 cut(s)	328, 651, 1032, 1306, 1494, 2185
BstSFI	CTRYAG	5 cut(s)	391, 1638, 1719, 2244, 2331
BstV1I	GCAGC	5 cut(s)	2301, 2397, 2622, 2864, 3095
BstV2I	GAAGAC	4 cut(s)	807, 921, 2725, 3009
BstX2I	RGATCY	6 cut(s)	306, 768, 1663, 1766, 2170, 2688
BstYI	RGATCY	6 cut(s)	306, 768, 1663, 1766, 2170, 2688
BsuI	GTATCC	1 cut(s)	1591
BsuRI	GGCC	3 cut(s)	846, 875, 2541
BtgI	CCRYGG	5 cut(s)	295, 1216, 1345, 2955, 3052
BtsCI	GGATG	7 cut(s)	1088, 1195, 1403, 1478, 2005, 2126, 2307
BtsI	GCAGTG	1 cut(s)	1716
BtsIMutI	CAGTG	5 cut(s)	30, 57, 400, 1716, 2705
BveI	ACCTGC	1 cut(s)	1828
Cac8I	GCNNGC	3 cut(s)	386, 2335, 2850
CaiI	CAGNNNCTG	2 cut(s)	1637, 2366
CfoI	GCGC	1 cut(s)	3143
Cfr13I	GGNCC	6 cut(s)	873, 1067, 1382, 1962, 2073, 3066
CseI	GACGC	2 cut(s)	208, 443
CsiI	ACCWGGT	1 cut(s)	651
Csp6I	GTAC	2 cut(s)	946, 3060
CviAII	CATG	8 cut(s)	296, 815, 1217, 1346, 1586, 2693, 2956, 2996
CviQI	GTAC	2 cut(s)	946, 3060
EaeI	YGGCCR	1 cut(s)	844
Eam1104I	CTCTTC	7 cut(s)	30, 311, 1272, 1551, 1804, 2067, 2655
EarI	CTCTTC	7 cut(s)	30, 311, 1272, 1551, 1804, 2067, 2655
Eco130I	CCWWGG	5 cut(s)	295, 1216, 1345, 1426, 2955
Eco147I	AGGCCT	1 cut(s)	2541
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	3155
Eco32I	GATATC	2 cut(s)	1048, 2215
Eco47I	GGWCC	5 cut(s)	1067, 1382, 1962, 2073, 3066
Eco57I	CTGAAG	6 cut(s)	813, 1359, 1575, 2343, 2963, 3137
Eco88I	CYCGRG	1 cut(s)	561
EcoNI	CCTNNNNNAGG	2 cut(s)	564, 2504
EcoO109I	RGGNCCY	2 cut(s)	1962, 2073
EcoRI	GAATTC	3 cut(s)	1084, 1742, 2990
EcoRII	CCWGG	6 cut(s)	328, 651, 1032, 1306, 1494, 2185
EcoRV	GATATC	2 cut(s)	1048, 2215
EcoT14I	CCWWGG	5 cut(s)	295, 1216, 1345, 1426, 2955
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	5 cut(s)	295, 1216, 1345, 1426, 2955
Esp3I	CGTCTC	1 cut(s)	1112
FaeI	CATG	8 cut(s)	299, 818, 1220, 1349, 1589, 2696, 2959, 2999
FaqI	GGGAC	8 cut(s)	313, 371, 1050, 2348, 2563, 2793, 2922, 3033
FatI	CATG	8 cut(s)	295, 814, 1216, 1345, 1585, 2692, 2955, 2995
FbaI	TGATCA	2 cut(s)	1228, 2559
Fnu4HI	GCNGC	5 cut(s)	2290, 2386, 2611, 2853, 3109
FokI	GGATG	7 cut(s)	1075, 1202, 1390, 1465, 2012, 2113, 2314
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	5 cut(s)	2290, 2386, 2611, 2853, 3109
FspBI	CTAG	6 cut(s)	381, 728, 1824, 2096, 2163, 3005
GlaI	GCGC	1 cut(s)	3142
GluI	GCNGC	5 cut(s)	2290, 2386, 2611, 2853, 3109
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	2 cut(s)	999, 1905
HaeIII	GGCC	3 cut(s)	846, 875, 2541
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	2 cut(s)	208, 443
HhaI	GCGC	1 cut(s)	3143
Hin1II	CATG	8 cut(s)	299, 818, 1220, 1349, 1589, 2696, 2959, 2999
Hin6I	GCGC	1 cut(s)	3141
HinP1I	GCGC	1 cut(s)	3141
HincII	GTYRAC	2 cut(s)	592, 1492
HindII	GTYRAC	2 cut(s)	592, 1492
HindIII	AAGCTT	6 cut(s)	266, 865, 999, 1912, 2355, 3155
HpaI	GTTAAC	1 cut(s)	1492
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	9 cut(s)	203, 268, 749, 833, 904, 1463, 1563, 1644, 2929
Hpy99I	CGWCG	2 cut(s)	11, 179
HpyCH4III	ACNGT	5 cut(s)	25, 61, 1012, 1870, 2774
HpyCH4IV	ACGT	1 cut(s)	948
HpyCH4V	TGCA	9 cut(s)	195, 952, 1300, 1640, 1716, 1721, 2333, 2483, 2527
HpyF10VI	GCNNNNNNNGC	6 cut(s)	394, 1292, 1335, 2182, 2343, 3163
HpySE526I	ACGT	1 cut(s)	948
Hsp92II	CATG	8 cut(s)	299, 818, 1220, 1349, 1589, 2696, 2959, 2999
HspAI	GCGC	1 cut(s)	3141
Ksp22I	TGATCA	2 cut(s)	1228, 2559
KspAI	GTTAAC	1 cut(s)	1492
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	4 cut(s)	74, 2014, 2734, 3171
Lsp1109I	GCAGC	5 cut(s)	2301, 2397, 2622, 2864, 3095
LweI	GCATC	2 cut(s)	2268, 2292
MabI	ACCWGGT	1 cut(s)	651
MaeI	CTAG	6 cut(s)	381, 728, 1824, 2096, 2163, 3005
MaeII	ACGT	1 cut(s)	948
MaeIII	GTNAC	5 cut(s)	964, 1390, 1569, 1627, 2930
MfeI	CAATTG	2 cut(s)	672, 1232
MflI	RGATCY	6 cut(s)	306, 768, 1663, 1766, 2170, 2688
MhlI	GDGCHC	2 cut(s)	42, 2881
MlsI	TGGCCA	1 cut(s)	846
MluNI	TGGCCA	1 cut(s)	846
MlyI	GAGTC	6 cut(s)	202, 521, 911, 1637, 2545, 3010
MmeI	TCCRAC	3 cut(s)	157, 2431, 2756
Mox20I	TGGCCA	1 cut(s)	846
MroXI	GAANNNNTTC	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	846
MslI	CAYNNNNRTG	2 cut(s)	423, 819
Msp20I	TGGCCA	1 cut(s)	846
MspA1I	CMGCKG	2 cut(s)	1064, 1379
MspCI	CTTAAG	3 cut(s)	65, 2543, 2815
MspI	CCGG	1 cut(s)	554
MspR9I	CCNGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
MunI	CAATTG	2 cut(s)	672, 1232
MvaI	CCWGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
MwoI	GCNNNNNNNGC	6 cut(s)	394, 1292, 1335, 2182, 2343, 3163
NcoI	CCATGG	4 cut(s)	295, 1216, 1345, 2955
NlaIII	CATG	8 cut(s)	299, 818, 1220, 1349, 1589, 2696, 2959, 2999
NlaIV	GGNNCC	4 cut(s)	185, 558, 1285, 2690
NmuCI	GTSAC	5 cut(s)	964, 1390, 1569, 1627, 2930
PaeR7I	CTCGAG	1 cut(s)	561
PceI	AGGCCT	1 cut(s)	2541
PciSI	GCTCTTC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	2291, 2387, 2612, 2854, 3110
PleI	GAGTC	6 cut(s)	202, 520, 911, 1637, 2545, 3009
PpsI	GAGTC	6 cut(s)	202, 520, 911, 1637, 2545, 3009
Ppu21I	YACGTR	1 cut(s)	949
PpuMI	RGGWCCY	2 cut(s)	1962, 2073
PshAI	GACNNNNGTC	1 cut(s)	2071
PshBI	ATTAAT	1 cut(s)	542
Psp5II	RGGWCCY	2 cut(s)	1962, 2073
Psp6I	CCWGG	6 cut(s)	328, 651, 1032, 1306, 1494, 2185
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	6 cut(s)	328, 651, 1032, 1306, 1494, 2185
PspN4I	GGNNCC	4 cut(s)	185, 558, 1285, 2690
PspPI	GGNCC	6 cut(s)	873, 1067, 1382, 1962, 2073, 3066
PspPPI	RGGWCCY	2 cut(s)	1962, 2073
PspXI	VCTCGAGB	1 cut(s)	561
PstI	CTGCAG	3 cut(s)	1642, 1723, 2335
PstNI	CAGNNNCTG	2 cut(s)	1637, 2366
PsuI	RGATCY	6 cut(s)	306, 768, 1663, 1766, 2170, 2688
PvuII	CAGCTG	2 cut(s)	1064, 1379
RsaI	GTAC	2 cut(s)	947, 3061
RsaNI	GTAC	2 cut(s)	946, 3060
RseI	CAYNNNNRTG	2 cut(s)	423, 819
SapI	GCTCTTC	1 cut(s)	30
SatI	GCNGC	5 cut(s)	2290, 2386, 2611, 2853, 3109
Sau96I	GGNCC	6 cut(s)	873, 1067, 1382, 1962, 2073, 3066
SchI	GAGTC	6 cut(s)	202, 521, 911, 1637, 2545, 3010
ScrFI	CCNGG	6 cut(s)	330, 653, 1034, 1308, 1496, 2187
SduI	GDGCHC	2 cut(s)	42, 2881
SexAI	ACCWGGT	1 cut(s)	651
SfaNI	GCATC	2 cut(s)	2268, 2292
SfcI	CTRYAG	5 cut(s)	391, 1638, 1719, 2244, 2331
Sfr274I	CTCGAG	1 cut(s)	561
SinI	GGWCC	5 cut(s)	1067, 1382, 1962, 2073, 3066
SlaI	CTCGAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	2 cut(s)	423, 819
SmlI	CTYRAG	8 cut(s)	65, 83, 561, 2007, 2543, 2815, 2985, 3152
SmoI	CTYRAG	8 cut(s)	65, 83, 561, 2007, 2543, 2815, 2985, 3152
SseBI	AGGCCT	1 cut(s)	2541
SsiI	CCGC	3 cut(s)	119, 1115, 2750
SspI	AATATT	1 cut(s)	1262
SspMI	CTAG	6 cut(s)	381, 728, 1824, 2096, 2163, 3005
StuI	AGGCCT	1 cut(s)	2541
StyD4I	CCNGG	6 cut(s)	328, 651, 1032, 1306, 1494, 2185
StyI	CCWWGG	5 cut(s)	295, 1216, 1345, 1426, 2955
TaaI	ACNGT	5 cut(s)	25, 61, 1012, 1870, 2774
TaiI	ACGT	1 cut(s)	951
TaqI	TCGA	5 cut(s)	337, 562, 2065, 2135, 2407
TaqII	GACCGA	1 cut(s)	819
TscAI	CASTG	5 cut(s)	30, 57, 407, 1723, 2712
TseFI	GTSAC	5 cut(s)	964, 1390, 1569, 1627, 2930
TseI	GCWGC	5 cut(s)	2289, 2385, 2610, 2852, 3108
Tsp45I	GTSAC	5 cut(s)	964, 1390, 1569, 1627, 2930
TspDTI	ATGAA	9 cut(s)	85, 441, 509, 543, 1077, 1530, 1551, 1602, 1911
TspGWI	ACGGA	3 cut(s)	87, 133, 1409
TspRI	CASTG	5 cut(s)	30, 57, 407, 1723, 2712
Vha464I	CTTAAG	3 cut(s)	65, 2543, 2815
VpaK11BI	GGWCC	5 cut(s)	1067, 1382, 1962, 2073, 3066
VspI	ATTAAT	1 cut(s)	542
XagI	CCTNNNNNAGG	2 cut(s)	564, 2504
XapI	RAATTY	8 cut(s)	496, 663, 686, 1084, 1742, 2149, 2444, 2990
XhoI	CTCGAG	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	6 cut(s)	381, 728, 1824, 2096, 2163, 3005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.