Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004743

Physical Location & Seq

Genomic Coordinates Reverse (-)

32311749 .. 32316295

Gene Structure 4547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24416

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3189 bp

ATGGGCGACGAGAAAGCGAAAACAGTGGTTGAAGAAGAGCCCAAAATCCCAGTGTTCACAGTCCTTAAGAACGGAGCGATTCTCAAGAACATCTTCATCGTCAACAAACCCCCACCACCGCCACACTCCGAACCAATCTCGTCCGTCCATCAGGAAACCGAAGAAATCTTGATCGTCGGACGCCACCCCGACTGCAACATCGTGCTGACTCACCCCAGCGTCAGCAGATTCCACCTCCAAATCCTCTCTAATCCCTCCTCCCACAAGCTTTTCCTCACCGATTTATCATCAGTCCATGGGACTTGGATCTCGGAGAAGAGGATTGAGCCAGGGGTTCGAGTAGAGCTGAGGCAAGGGGACACGCTCCGGGTTGGTGCTTCTAGCAGGCTCTATAGGCTTCACTGGATTCCTTTGAGCCACGCCTATGAACAAGACGCACTCAGGGTTCTGAATTGTTTGCCAGTTGAAACCGCAGAACCTGATTGTTCTGATATGAATTTTGAGGGTATGGAGTCTTTATTCTCTGATGACAATATGGGATTAATTCAACCTCCGGTGCCTCGAGGAGGAGATCAAAGTGAACAAGGTGTTGACAACTCATCAGAAGATGATTGTGAAGAGAAAAAGATGTGTGAGATTCCAGAAATAGACCAGGTTGTGAATATTTTGCCAATTGAAAAAGCAGAATTTGAATCTACTGAATCAATTTCTGAGGTTATAGAATCTCTAGTCTGTGGTGATAATTTGGGAATTATTGGGCGGAAGGAGATCCCATCAGCACCTCCAATGCCTGAAGAAGAAGACCGAAGTGAACATGGTGGTGAGAACTCGTCAAAAGTTGTTGGTCAAGAGAATGTGTTGTCAAGCTTCTGGGCCTTTGGAACTGAATCGGTGAACCTGTTTTTTCCTCGTGAAGACTCTTCAAAGGAAAACCAGTACGTGCAACTAAGTTGTGTCACAGGAGGTTCTGAATTGGAAAAAGAAGGAGAAGCTTCTCCTACTGTTCAGATATTGGAAAAAGACCAGGGACAGAGTGATATCTCTGGTCTTTCAGCTGGACCTTTTGTGATAGAGAATTCATCCTTGCTGATCCGAGAAGTCCTTGCGGAGACGAAACATCAACAAGTTGAAGAAGTAAACCTGACCCCAGAAGCAAAATCAGACTTGTTGGTTAATCTGGATAGCAAAAGCTCTATAACGAAAGACCAAGGACAGGCTGATCAATTGTGTCTATCTTCTGAACCTCTTGAATATTCCGATGACAAGGAAGAGGGTGCCTATCCGGCTGCACAAATACCTGGGAGAAATGCTGACCAAAGCTCTTTGAGCAAAGACCATGGACAGAATGATAATGTCTTGTGTCTTTCAGCTGGACCTTTTGTGACGGAGAACTCATCCTTGCTGGTTGGGGAAGTCCTTGGGGAGATCAACAATCAAGAAGGTGAAGAAGAAAACCCATCACAAAAACCTACCTTGCTGGTTAACCTGGATTTTGAGATTTCTAACGAAATCAGATGTCTTGTTGATGAAAGACGTGGAGAAACTGAAAAGAGAAGTGTGTCACCCAAAAACCACCATGAAAAGAGGGATACCAAAACCATCTCCTCTGTGCCTCTTGTCACAGATTCTATAGACTCATTTTCACCAGACAGGGATCTCTCAGAGATAATAGATGACAAAGAGAACCAGACTCCACTATCTATCTGCACTGCAGGAGGACAGCCTGAATCAGAATTCTGTAATAGCCCTCCCCTGAGATCCGAAGATAAGTCAATCTTTGGAGAAAGCATTTGGGAAAGAAGAGGTAAACCTGCTAGTGCTGTTAGGATTCAAACAGAGACAAGCAGAGAAAGAACTACTGTGGAGGCAGGAATTGATAACGATAATGAACAGGAGGTGGAAAGCATTACTCCAGACAAGGAGAATCTAACACCAAATACTCTTCGTCTGAGGTCCTTGAAAAAGAAGTTTGAGGTAGAAATTAAGCTGGATGATACTCAAGAGGAGCAGGAAATCTTTACTCCTGACAAGGAAAACTTCACTCCAAATACTCTTCGACTGAGGTCCTTGAAGAAGAAGGGTAAGCTAGAATTAACTGATTCCAAATCCCACAGATCATCCTTGTCGAAGCAAAACTTAAATTCCAATATCCCTAGAGAAGATCTGCTTGTATCGCCAGCGAAAGAGAACCAGAAGTTGAAGGATATCCAAGAAAGAAAATCAGTAGAAACTACTACTGGGAATCAAGCAAGGGTGGAAAAAAAGTTGTTGCTCACAAGCAGCACGAAAAGGATGCCATTCCAATCACTACTTAAAAGTTCTGCAGGCAAGAACAGCAGATCAGAAGCTTCAGTCCCCGATGTAGCTACTAAAAACAGCACATTTCTTGCTTGTAGTCGAACAAAGGAGAAGGTCAAGAATCCACTCTCTAATAAATTTGCTGGAGAAAGAAAGAGGGGCTGGACTATGGTTGCAGACACTAATACTCTCCTTCACAAGGAATCAAGGAAGTCATTGCAACTTCTACAAGGTCTTAAGGGGACTCATTTGATCATTCCAAGAATGGTTATACGGGAACTGGATTGCTTGAAACAGCGTGGCAGCCTGTTCAGAAAGAAAACAGAGGCTTGTTTGGTTCTGGAATGGATTGAAGAGTGTATGGTAAAAACAAATTGGTGGATCCATGTCCAGAGTTCACTGGAAGATGGAAGACTGATCGCTCCAACCCCTCCTGCTTCTCCACAGTCTCTATTTAGTGAGGACAGTTGGGGACTTACTTCTGGAACAACAAGCTCGTTTCCCTTCTTAAGATGTAGGAGTTCTATGGAACTTGTATCGCCAGCAGCAGAAGATCATATACTTGATTGTGCTCTTTTACATAGGAAGATGAGCAATGAGGGACAACTTGTTCTTCTAAGTAGTGACATCACCCTGAAGATCAAAGCCATGGCAGAGGGTTTGATTTGTGAGACAGCTCAAGAATTCCATGAGAGTTTAGTGAACCCGTCTTCTGACAGGTTTATGTGGGCTGGTAGCTGTCCCCGTGGGCGTACTTGGTCCTACTTAGCTGACATAGTTTTGGCGGAGAAGTATAATCGCTGCCAACTGAAGAAGTCATCAAGGGGGGAAGGCGCAAAAGGTCTCAAGCTCATTTTGCTCCACAATTCTCAGTATGGACAGATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004540 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008995 GO:0009056 GO:0009057 GO:0009555 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016070 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019439 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0034641 GO:0034655 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0046483 GO:0046700 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA PIN_4

Protein Analysis

1062

Amino Acids

118.27

Weight (kDa)

5.15

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	54 - 126	4.3e-08	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	58 - 125	2.1e-17	FHA domain
PIN_4	PF13638	823 - 992	6.8e-20	PIN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34355 AT1G34355 AT1G34355
fragaria_vesca	FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232
malus_domestica	MD05G1040500.v1.1 MD10G1046600.v1.1
prunus_persica	Prupe.8G054200_v2.0.a1
pyrus_communis	pycom05g03310 pycom10g03280 pycom10g03290
rosa_chinensis	RchiOBHm_Chr6g0272171
rosa_laevigata	RLG00000013694
rosa_multiflora	Rmu_sc0005748.1_g000012
rosa_roxburghii	Rroxscaffold_7G00196530
rosa_rugosa	Rorug06G0066700
rosa_samantha	Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600
rosa_wichuraiana	Rw6G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	561
Acc36I	ACCTGC	1 cut(s)	1819
AccB1I	GGYRCC	2 cut(s)	556, 1274
AciI	CCGC	5 cut(s)	119, 471, 760, 1106, 3083
AclWI	GGATC	8 cut(s)	314, 763, 1084, 1662, 1752, 2674, 2687, 3175
AcsI	RAATTY	7 cut(s)	496, 686, 1075, 1733, 2140, 2435, 2981
AcuI	CTGAAG	4 cut(s)	813, 2334, 2954, 3128
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	2 cut(s)	938, 3052
AfiI	CCNNNNNNNGG	3 cut(s)	566, 1213, 2497
AflII	CTTAAG	3 cut(s)	65, 2534, 2806
AjiI	CACGTC	1 cut(s)	1535
AjnI	CCWGG	5 cut(s)	328, 651, 1023, 1297, 1485
AloI	GAACNNNNNNTCC	2 cut(s)	2892, 2924
Alw21I	GWGCWC	1 cut(s)	2872
Alw26I	GTCTC	5 cut(s)	1103, 1832, 2751, 2963, 3146
AlwI	GGATC	8 cut(s)	314, 763, 1084, 1662, 1752, 2674, 2687, 3175
AlwNI	CAGNNNCTG	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	561
AoxI	GGCC	1 cut(s)	873
ApeKI	GCWGC	5 cut(s)	1286, 2280, 2601, 2843, 3099
ApoI	RAATTY	7 cut(s)	496, 686, 1075, 1733, 2140, 2435, 2981
AseI	ATTAAT	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	3134
AspS9I	GGNCC	6 cut(s)	873, 1058, 1373, 1953, 2064, 3057
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	9 cut(s)	203, 268, 749, 833, 904, 1454, 1554, 1635, 2920
AvaI	CYCGRG	1 cut(s)	561
AvaII	GGWCC	5 cut(s)	1058, 1373, 1953, 2064, 3057
BamHI	GGATCC	1 cut(s)	2679
BanI	GGYRCC	2 cut(s)	556, 1274
BanII	GRGCYC	1 cut(s)	42
BarI	GAAGNNNNNNTAC	2 cut(s)	2841, 2873
BauI	CACGAG	1 cut(s)	909
BbsI	GAAGAC	4 cut(s)	807, 921, 2716, 3000
Bbv12I	GWGCWC	1 cut(s)	2872
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	5 cut(s)	1273, 2292, 2613, 2855, 3086
BccI	CCATC	5 cut(s)	156, 781, 1465, 1607, 2699
BcgI	CGANNNNNNTGC	2 cut(s)	2275, 2309
BciT130I	CCWGG	5 cut(s)	330, 653, 1025, 1299, 1487
BciVI	GTATCC	1 cut(s)	1582
BclI	TGATCA	2 cut(s)	1219, 2550
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	5 cut(s)	1103, 1832, 2751, 2963, 3146
BfaI	CTAG	5 cut(s)	381, 728, 1815, 2087, 2154
BfmI	CTRYAG	4 cut(s)	391, 1629, 1710, 2322
BfrI	CTTAAG	3 cut(s)	65, 2534, 2806
BfuAI	ACCTGC	1 cut(s)	1819
BfuI	GTATCC	1 cut(s)	1582
BglI	GCCNNNNNGGC	1 cut(s)	1283
BglII	AGATCT	1 cut(s)	2161
BisI	GCNGC	5 cut(s)	1287, 2281, 2602, 2844, 3100
BlsI	GCNGC	5 cut(s)	1288, 2282, 2603, 2845, 3101
Bme1390I	CCNGG	6 cut(s)	330, 368, 653, 1025, 1299, 1487
Bme18I	GGWCC	5 cut(s)	1058, 1373, 1953, 2064, 3057
BmeT110I	CYCGRG	1 cut(s)	561
BmgBI	CACGTC	1 cut(s)	1535
BmgT120I	GGNCC	6 cut(s)	873, 1058, 1373, 1953, 2064, 3057
BmiI	GGNNCC	3 cut(s)	558, 1276, 2681
BmrFI	CCNGG	6 cut(s)	330, 368, 653, 1025, 1299, 1487
BmrI	ACTGGG	2 cut(s)	44, 2247
BmsI	GCATC	1 cut(s)	2283
BmuI	ACTGGG	2 cut(s)	44, 2247
BoxI	GACNNNNGTC	1 cut(s)	2062
BpiI	GAAGAC	4 cut(s)	807, 921, 2716, 3000
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	2 cut(s)	1896, 2463
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	4 cut(s)	68, 1983, 2961, 3128
BpuMI	CCSGG	1 cut(s)	368
BsaAI	YACGTR	1 cut(s)	940
BsaHI	GRCGYC	1 cut(s)	181
BsaI	GGTCTC	1 cut(s)	3146
BsaJI	CCNNGG	9 cut(s)	295, 329, 1024, 1207, 1298, 1336, 1417, 2946, 3043
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	3 cut(s)	566, 1213, 2497
Bse1I	ACTGG	7 cut(s)	50, 407, 461, 934, 2242, 2583, 2703
Bse3DI	GCAATG	2 cut(s)	2513, 2899
BseBI	CCWGG	5 cut(s)	330, 653, 1025, 1299, 1487
BseDI	CCNNGG	9 cut(s)	295, 329, 1024, 1207, 1298, 1336, 1417, 2946, 3043
BseGI	GGATG	5 cut(s)	1079, 1394, 1996, 2117, 2298
BseLI	CCNNNNNNNGG	3 cut(s)	566, 1213, 2497
BseMI	GCAATG	2 cut(s)	2513, 2899
BseMII	CTCAG	8 cut(s)	338, 454, 702, 1674, 1745, 1940, 2051, 3182
BseNI	ACTGG	7 cut(s)	50, 407, 461, 934, 2242, 2583, 2703
BseRI	GAGGAG	5 cut(s)	247, 579, 582, 1594, 2018
BseXI	GCAGC	5 cut(s)	1273, 2292, 2613, 2855, 3086
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	2 cut(s)	1272, 1690
BshFI	GGCC	1 cut(s)	875
BshNI	GGYRCC	2 cut(s)	556, 1274
BsiHKAI	GWGCWC	1 cut(s)	2872
BsiHKCI	CYCGRG	1 cut(s)	561
BsiSI	CCGG	3 cut(s)	367, 554, 1283
BslFI	GGGAC	8 cut(s)	313, 371, 1041, 2339, 2554, 2784, 2913, 3024
BslI	CCNNNNNNNGG	3 cut(s)	566, 1213, 2497
BsmAI	GTCTC	5 cut(s)	1103, 1832, 2751, 2963, 3146
BsmBI	CGTCTC	1 cut(s)	1103
BsmFI	GGGAC	8 cut(s)	313, 371, 1041, 2339, 2554, 2784, 2913, 3024
BsnI	GGCC	1 cut(s)	875
Bso31I	GGTCTC	1 cut(s)	3146
BsoBI	CYCGRG	1 cut(s)	561
Bsp1286I	GDGCHC	2 cut(s)	42, 2872
Bsp19I	CCATGG	3 cut(s)	295, 1336, 2946
BspACI	CCGC	5 cut(s)	119, 471, 760, 1106, 3083
BspANI	GGCC	1 cut(s)	875
BspCNI	CTCAG	8 cut(s)	339, 453, 703, 1673, 1746, 1941, 2052, 3181
BspLI	GGNNCC	3 cut(s)	558, 1276, 2681
BspMAI	CTGCAG	2 cut(s)	1714, 2326
BspMI	ACCTGC	1 cut(s)	1819
BspPI	GGATC	8 cut(s)	314, 763, 1084, 1662, 1752, 2674, 2687, 3175
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	2 cut(s)	556, 1274
BspTI	CTTAAG	3 cut(s)	65, 2534, 2806
BspTNI	GGTCTC	1 cut(s)	3146
BsrDI	GCAATG	2 cut(s)	2513, 2899
BsrI	ACTGG	7 cut(s)	50, 407, 461, 934, 2242, 2583, 2703
BssECI	CCNNGG	9 cut(s)	295, 329, 1024, 1207, 1298, 1336, 1417, 2946, 3043
BssNI	GRCGYC	1 cut(s)	181
BssSI	CACGAG	1 cut(s)	909
BssT1I	CCWWGG	5 cut(s)	295, 1207, 1336, 1417, 2946
Bst2BI	CACGAG	1 cut(s)	909
Bst2UI	CCWGG	5 cut(s)	330, 653, 1025, 1299, 1487
Bst4CI	ACNGT	6 cut(s)	25, 61, 1003, 1861, 2745, 2765
Bst6I	CTCTTC	9 cut(s)	30, 311, 612, 925, 1263, 1795, 1947, 2058, 2646
BstACI	GRCGYC	1 cut(s)	181
BstAFI	CTTAAG	3 cut(s)	65, 2534, 2806
BstBAI	YACGTR	1 cut(s)	940
BstC8I	GCNNGC	4 cut(s)	386, 2178, 2326, 2841
BstDSI	CCRYGG	4 cut(s)	295, 1336, 2946, 3043
BstENI	CCTNNNNNAGG	2 cut(s)	564, 2495
BstF5I	GGATG	5 cut(s)	1079, 1394, 1996, 2117, 2298
BstHHI	GCGC	1 cut(s)	3134
BstMAI	GTCTC	5 cut(s)	1103, 1832, 2751, 2963, 3146
BstMWI	GCNNNNNNNGC	6 cut(s)	394, 1283, 1326, 2173, 2334, 3154
BstNI	CCWGG	5 cut(s)	330, 653, 1025, 1299, 1487
BstPAI	GACNNNNGTC	1 cut(s)	2062
BstSCI	CCNGG	6 cut(s)	328, 366, 651, 1023, 1297, 1485
BstSFI	CTRYAG	4 cut(s)	391, 1629, 1710, 2322
BstV1I	GCAGC	5 cut(s)	1273, 2292, 2613, 2855, 3086
BstV2I	GAAGAC	4 cut(s)	807, 921, 2716, 3000
BstX2I	RGATCY	7 cut(s)	306, 768, 1654, 1757, 2161, 2679, 3180
BstYI	RGATCY	7 cut(s)	306, 768, 1654, 1757, 2161, 2679, 3180
BsuI	GTATCC	1 cut(s)	1582
BsuRI	GGCC	1 cut(s)	875
BtgI	CCRYGG	4 cut(s)	295, 1336, 2946, 3043
BtrI	CACGTC	1 cut(s)	1535
BtsCI	GGATG	5 cut(s)	1079, 1394, 1996, 2117, 2298
BtsI	GCAGTG	1 cut(s)	1707
BtsIMutI	CAGTG	5 cut(s)	30, 57, 400, 1707, 2696
BveI	ACCTGC	1 cut(s)	1819
Cac8I	GCNNGC	4 cut(s)	386, 2178, 2326, 2841
CaiI	CAGNNNCTG	1 cut(s)	479
CfoI	GCGC	1 cut(s)	3134
Cfr13I	GGNCC	6 cut(s)	873, 1058, 1373, 1953, 2064, 3057
CseI	GACGC	3 cut(s)	189, 208, 443
CsiI	ACCWGGT	1 cut(s)	651
Csp6I	GTAC	2 cut(s)	937, 3051
CviAII	CATG	7 cut(s)	296, 815, 1337, 1577, 2684, 2947, 2987
CviQI	GTAC	2 cut(s)	937, 3051
Eam1104I	CTCTTC	9 cut(s)	30, 311, 612, 925, 1263, 1795, 1947, 2058, 2646
EarI	CTCTTC	9 cut(s)	30, 311, 612, 925, 1263, 1795, 1947, 2058, 2646
EciI	GGCGGA	2 cut(s)	775, 3098
Eco130I	CCWWGG	5 cut(s)	295, 1207, 1336, 1417, 2946
Eco24I	GRGCYC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	3146
Eco32I	GATATC	2 cut(s)	1039, 2206
Eco47I	GGWCC	5 cut(s)	1058, 1373, 1953, 2064, 3057
Eco57I	CTGAAG	4 cut(s)	813, 2334, 2954, 3128
Eco88I	CYCGRG	1 cut(s)	561
EcoNI	CCTNNNNNAGG	2 cut(s)	564, 2495
EcoO109I	RGGNCCY	2 cut(s)	1953, 2064
EcoRI	GAATTC	3 cut(s)	1075, 1733, 2981
EcoRII	CCWGG	5 cut(s)	328, 651, 1023, 1297, 1485
EcoRV	GATATC	2 cut(s)	1039, 2206
EcoT14I	CCWWGG	5 cut(s)	295, 1207, 1336, 1417, 2946
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	5 cut(s)	295, 1207, 1336, 1417, 2946
Esp3I	CGTCTC	1 cut(s)	1103
FaeI	CATG	7 cut(s)	299, 818, 1340, 1580, 2687, 2950, 2990
FaqI	GGGAC	8 cut(s)	313, 371, 1041, 2339, 2554, 2784, 2913, 3024
FatI	CATG	7 cut(s)	295, 814, 1336, 1576, 2683, 2946, 2986
FbaI	TGATCA	2 cut(s)	1219, 2550
Fnu4HI	GCNGC	5 cut(s)	1287, 2281, 2602, 2844, 3100
FokI	GGATG	5 cut(s)	1066, 1381, 2003, 2104, 2305
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	5 cut(s)	1287, 2281, 2602, 2844, 3100
FspBI	CTAG	5 cut(s)	381, 728, 1815, 2087, 2154
GlaI	GCGC	1 cut(s)	3133
GluI	GCNGC	5 cut(s)	1287, 2281, 2602, 2844, 3100
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	2 cut(s)	1896, 2463
HaeIII	GGCC	1 cut(s)	875
HapII	CCGG	3 cut(s)	367, 554, 1283
HgaI	GACGC	3 cut(s)	189, 208, 443
HhaI	GCGC	1 cut(s)	3134
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	7 cut(s)	299, 818, 1340, 1580, 2687, 2950, 2990
Hin6I	GCGC	1 cut(s)	3132
HinP1I	GCGC	1 cut(s)	3132
HincII	GTYRAC	3 cut(s)	103, 592, 1483
HindII	GTYRAC	3 cut(s)	103, 592, 1483
HindIII	AAGCTT	4 cut(s)	266, 865, 990, 2346
HpaI	GTTAAC	1 cut(s)	1483
HpaII	CCGG	3 cut(s)	367, 554, 1283
HphI	GGTGA	9 cut(s)	203, 268, 749, 833, 904, 1454, 1554, 1635, 2920
Hpy99I	CGWCG	2 cut(s)	11, 179
HpyAV	CCTTC	9 cut(s)	757, 977, 1433, 2071, 2194, 2404, 2501, 2812, 3122
HpyCH4III	ACNGT	6 cut(s)	25, 61, 1003, 1861, 2745, 2765
HpyCH4IV	ACGT	2 cut(s)	939, 1534
HpyCH4V	TGCA	8 cut(s)	195, 943, 1289, 1707, 1712, 2324, 2474, 2518
HpyF10VI	GCNNNNNNNGC	6 cut(s)	394, 1283, 1326, 2173, 2334, 3154
HpySE526I	ACGT	2 cut(s)	939, 1534
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	7 cut(s)	299, 818, 1340, 1580, 2687, 2950, 2990
HspAI	GCGC	1 cut(s)	3132
Ksp22I	TGATCA	2 cut(s)	1219, 2550
KspAI	GTTAAC	1 cut(s)	1483
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	5 cut(s)	74, 369, 2005, 2725, 3162
Lsp1109I	GCAGC	5 cut(s)	1273, 2292, 2613, 2855, 3086
LweI	GCATC	1 cut(s)	2283
MabI	ACCWGGT	1 cut(s)	651
MaeI	CTAG	5 cut(s)	381, 728, 1815, 2087, 2154
MaeII	ACGT	2 cut(s)	939, 1534
MaeIII	GTNAC	5 cut(s)	955, 1381, 1560, 1618, 2921
MfeI	CAATTG	2 cut(s)	672, 1223
MflI	RGATCY	7 cut(s)	306, 768, 1654, 1757, 2161, 2679, 3180
MhlI	GDGCHC	2 cut(s)	42, 2872
MlyI	GAGTC	6 cut(s)	202, 521, 911, 1628, 1684, 2536
MmeI	TCCRAC	2 cut(s)	157, 2747
MroXI	GAANNNNTTC	1 cut(s)	92
MslI	CAYNNNNRTG	2 cut(s)	423, 819
MspA1I	CMGCKG	2 cut(s)	1055, 1370
MspCI	CTTAAG	3 cut(s)	65, 2534, 2806
MspI	CCGG	3 cut(s)	367, 554, 1283
MspR9I	CCNGG	6 cut(s)	330, 368, 653, 1025, 1299, 1487
MunI	CAATTG	2 cut(s)	672, 1223
MvaI	CCWGG	5 cut(s)	330, 653, 1025, 1299, 1487
MwoI	GCNNNNNNNGC	6 cut(s)	394, 1283, 1326, 2173, 2334, 3154
NciI	CCSGG	1 cut(s)	368
NcoI	CCATGG	3 cut(s)	295, 1336, 2946
NlaIII	CATG	7 cut(s)	299, 818, 1340, 1580, 2687, 2950, 2990
NlaIV	GGNNCC	3 cut(s)	558, 1276, 2681
NmuCI	GTSAC	5 cut(s)	955, 1381, 1560, 1618, 2921
PaeR7I	CTCGAG	1 cut(s)	561
PciSI	GCTCTTC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	1288, 2282, 2603, 2845, 3101
PleI	GAGTC	6 cut(s)	202, 520, 911, 1628, 1684, 2536
PpsI	GAGTC	6 cut(s)	202, 520, 911, 1628, 1684, 2536
Ppu21I	YACGTR	1 cut(s)	940
PpuMI	RGGWCCY	2 cut(s)	1953, 2064
PshAI	GACNNNNGTC	1 cut(s)	2062
PshBI	ATTAAT	1 cut(s)	542
Psp5II	RGGWCCY	2 cut(s)	1953, 2064
Psp6I	CCWGG	5 cut(s)	328, 651, 1023, 1297, 1485
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	5 cut(s)	328, 651, 1023, 1297, 1485
PspN4I	GGNNCC	3 cut(s)	558, 1276, 2681
PspPI	GGNCC	6 cut(s)	873, 1058, 1373, 1953, 2064, 3057
PspPPI	RGGWCCY	2 cut(s)	1953, 2064
PspXI	VCTCGAGB	1 cut(s)	561
PstI	CTGCAG	2 cut(s)	1714, 2326
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	7 cut(s)	306, 768, 1654, 1757, 2161, 2679, 3180
PvuII	CAGCTG	2 cut(s)	1055, 1370
RsaI	GTAC	2 cut(s)	938, 3052
RsaNI	GTAC	2 cut(s)	937, 3051
RseI	CAYNNNNRTG	2 cut(s)	423, 819
SapI	GCTCTTC	1 cut(s)	30
SatI	GCNGC	5 cut(s)	1287, 2281, 2602, 2844, 3100
Sau96I	GGNCC	6 cut(s)	873, 1058, 1373, 1953, 2064, 3057
SchI	GAGTC	6 cut(s)	202, 521, 911, 1628, 1684, 2536
ScrFI	CCNGG	6 cut(s)	330, 368, 653, 1025, 1299, 1487
SduI	GDGCHC	2 cut(s)	42, 2872
SexAI	ACCWGGT	1 cut(s)	651
SfaNI	GCATC	1 cut(s)	2283
SfcI	CTRYAG	4 cut(s)	391, 1629, 1710, 2322
Sfr274I	CTCGAG	1 cut(s)	561
SinI	GGWCC	5 cut(s)	1058, 1373, 1953, 2064, 3057
SlaI	CTCGAG	1 cut(s)	561
SmiMI	CAYNNNNRTG	2 cut(s)	423, 819
SmlI	CTYRAG	8 cut(s)	65, 83, 561, 1998, 2534, 2806, 2976, 3143
SmoI	CTYRAG	8 cut(s)	65, 83, 561, 1998, 2534, 2806, 2976, 3143
SsiI	CCGC	5 cut(s)	119, 471, 760, 1106, 3083
SspI	AATATT	2 cut(s)	664, 1253
SspMI	CTAG	5 cut(s)	381, 728, 1815, 2087, 2154
StyD4I	CCNGG	6 cut(s)	328, 366, 651, 1023, 1297, 1485
StyI	CCWWGG	5 cut(s)	295, 1207, 1336, 1417, 2946
TaaI	ACNGT	6 cut(s)	25, 61, 1003, 1861, 2745, 2765
TaiI	ACGT	2 cut(s)	942, 1537
TaqI	TCGA	5 cut(s)	337, 562, 2056, 2126, 2398
TaqII	GACCGA	1 cut(s)	819
TscAI	CASTG	5 cut(s)	30, 57, 407, 1714, 2703
TseFI	GTSAC	5 cut(s)	955, 1381, 1560, 1618, 2921
TseI	GCWGC	5 cut(s)	1286, 2280, 2601, 2843, 3099
Tsp45I	GTSAC	5 cut(s)	955, 1381, 1560, 1618, 2921
TspDTI	ATGAA	7 cut(s)	85, 441, 509, 1068, 1542, 1593, 1902
TspGWI	ACGGA	3 cut(s)	87, 133, 1400
TspRI	CASTG	5 cut(s)	30, 57, 407, 1714, 2703
Vha464I	CTTAAG	3 cut(s)	65, 2534, 2806
VpaK11BI	GGWCC	5 cut(s)	1058, 1373, 1953, 2064, 3057
VspI	ATTAAT	1 cut(s)	542
XagI	CCTNNNNNAGG	2 cut(s)	564, 2495
XapI	RAATTY	7 cut(s)	496, 686, 1075, 1733, 2140, 2435, 2981
XhoI	CTCGAG	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	5 cut(s)	381, 728, 1815, 2087, 2154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.