Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004743

Physical Location & Seq

Genomic Coordinates Forward (+)

39554442 .. 39558780

Gene Structure 4339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3345 bp

ATGGGCGACGAGAAAGCGAAAACAGTGGTTGAAGAAGAGCCCAAAATCCCAGTGTTCACAGTCCTTAAGAACGGAGCGATTCTCAAGAACATCTTCATCGTCAACAAACCCCCACCACCGCCACACTCCGAACCAATCGCGTCCGTCCATCAAGAAACCGAAGAAATCTTGATCGTCGGACGACACCCCGACTGCAACATCGTGCTGACTCACCCCAGCGTCAGCAGATTCCACCTCCAAATCCTCTCTAATCCCTCCTCCCACAAGCTTTCCCTCACCGATTTATCATCAGTCCATGGGACTTGGATCTCGGAGAAGAGGATTGAGCCAGGGGTTCGAGTAGAGCTGAGGCAAGGGGACACGCTCCGGGTTGGTGCTTCTAGCAGGCTCTACAGGCTTCACTGGATTCCTTTGAGCCACGCCTATGAACAAGACGCACTCAGGGTGAGACCAATTGTCTTCTTTGGCTTCTCTGCTTTGAATTTCTTGATGCGGATTGAATTGGTTCTGAATTGTTTGCCAGTTGAAAACGCAGAACCTGATTGTTCTGATATGAATTTTGAGGGTATGGAGTCTTTATACTCTGATGAAAATATGGGATTAATTCAACCTCCGGTGCCTCGAGGAGGAGATCAAAGTGAACAAGGTGTTGACAACTCATCAGAAGATGATTGTGAAGAGAAAAAGATGTGTGAGATTCCAGAAATAGACCGGGTTGTGAATATTTTGCCAATTGAAAAAGCAGAATTTGAATCTACTGAATCAATTTCTGAGGTTATAGAATCTCTAGTCTGTGGTGGTAATTTGGGATTTATTGTGCAGAAGGAGATCCCATCAGCACCTCCAATGCCGGAAGAAGAAGACCGAAGTGAACATGGTGGTGAGAACTCGTCAAAAGTTGTTGTGCAAGAGAATGTGTTGTCAAGCTTCTGGGCCTTTGGAACTGAATCGGTGAACCTGTTTTTTCCTCTTGAAGACTCTACTTCTAATTCAAAGGAAAACCAGTACGTGCAACTAAATTGTGTCACAGGAGGTTCTGAATCAGAAAAAGAAGGAGAAGCTTCTCCTACTGTTCAGATATTGGAAAAAGACCAGGGACAGAGTGATATCTCTGGTCTTTCAGCTGGACCTTTTGTGATAGAGAATTCATCCTTGCTGATCCGAGAAGTCCATGCGGAGACGAAACATCAACAAGTTGAAGAAGTAAACCTCACCCCAGAAACAAAGTCAGACTTGCTGGTTAATCTGGATGGCAAAAGCTCTATAACGAAAGACCATAGACAGGCTGATCAATTGTGTCTATCTTCTGAACCTCTTGAATATTCCGATGACAAGGAAGAGGGTGCCTATCCTGCTGTTCATATACCTGGGAGAAATGCTGACCAAAGCTCTTTGAGCAAAGACCATGGACAGAACGATAATGTCTTGTGTCTTTCAGCTGGACCTTTTGTGACGGAGAACTCATCCTTGCTGGTTGGGGAAGTCCTTGGGGAGATCAACAATCAACAAGGTGAAGAAGAAAACCCATCACAAAAACCAACCTTGCTGGTTAACCTGGATTTTGAGATTTCTAATGAAATCAGATGTCTTGTTGATGAAAGACGTGGAGAAACTGAAAAGAGAAGTGTGTCACCCAAAAACCACCATGACAAGAGGGATACCAAAACCATCTCCTCTGTGCCTCTTGTCACAGATTCTGTAGACTCATTTTCACCAGACAGGGATCTCTCAGAGATAATAGATGACAAAGAGAACCAGACTCCACTATCTATCTGCACTGCAGGAGGACAGCCTGAATCAGAATTCTGTAAGAGCCCTCCCCTGAGATCCGAAGATAAGTCAATCTTTGGAGAAAGCATTTGGGAAAGAAGAGGTAAAACTGCTAGTGCTGTTAGGATTCAAACAGAGAGAAGCAGAGAAAGAACTACTGTGGAGGCAGGAATTGATAACGATAATGAACAGGAGGTCGAAAGCTTTACTCCAGACAAGGAGAATCTAACACCAAATACTCTTCGTCTGAGGTCCTTGAAAAAGAAGTTTGAGGTAGAAATTAAGCTGGATGATACTCAAGAGGAGCAGGAAATCTTTACTCCTGACAAGGAAAACTTCATACCAAATACTCTTCGACTGAGGTCCTTGAAGAAGAAGGGTAAGCTAGAATTAACCGATTCCAAATCCCACAGATCATCCTTGTCGAAGTTAAACTTAAATTCCAATATCCCTAGAGAAGATCTGCTTGTATCGCCAGGGAAAGAGAACCAGAAATTGAAGGATATCCAAGAAAGAAAATCAGTAGAAACTACTACTGGGAATCAAGCAAGGCTGGACAAAAAGTTGATGCTCACAAGCAGCACAAAAAGGATGCCATTCCAATCACTACTTAAAAGTTCTGCAGGCAAGAACAGCAGATCAGAAGCTTCAGTCCCCGATGTAGCTACTAAAAGCAGCACATTTCTTGCTTGTAGTCGAACGAAGGTGAAGGTCAAGAATCCACTCTCTAATAAATTTGTTGGAGAAGGAAAAAGGGGCTGGACTATGGTTGCAGACACTAATACTCTCCTTCACAAGGAATCAAGGAAGTCATTGCAACTTCTACAAGGTCTTAAGGGGACTCATTTGATCATTCCAAGAATGGTTATACGGGAACTGGATTGCTTGAAACAGCGTGGCAGCCTGTTCAGAAAGAAAACAGAGGCTTGTTTGGTTCTGGAATGGATTGAAGAGTGTATGGTAAAAACAAATTGGTGGATCCATGTCCAGAGTTCACTGGAAGATGGAAGACTGATCGCTCCAACCCCTCCTGCTTCTCCACAGTCTCTATTTAGTGAGGACAGTTGGGGACTTACTTCTGGAACAACAAGCTCGTTTCCCTTCTTAAGATGTAGGAGTTCTATGGAACTTGTATCGCCAGCAGCAGAAGATCATATACTTGATTGTGCTCTTTTACATAGGAAGATGAGCAATGAGGGACAACTTGTTCTTCTAAGTAGTGACATCACCCTGAAGATCAAAGCCATGGCAGAGGGTTTGATTTGTGAGACAGCTCAAGAATTCCATGAGAGTCTAGTGAACCCGTCTTCTGAGAGGTTTATGTGGGCTGGTAGCTGTCCCCGTGGGCGTACTTGGTCCTACTTAGCTGACGTAGTTTTGGCGGAGAAGTATAATCGCTGCCAACTGAAGAAGTCATCAAGGGGGAAGGCGCAAAAGGTCTCAAGCTCATTTTGCTCCACAATTCTCAGTATGGACAGATACATTAGATCAGCTAAAACTCTTTGCCTGTATTGCAATAGGTTGACTGCTTTTGCATCTATCAATCACTTCAAAATTCTTATTCTGTGCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004540 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008995 GO:0009056 GO:0009057 GO:0009555 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016070 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019439 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0034641 GO:0034655 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0046483 GO:0046700 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA PIN_4

Protein Analysis

1114

Amino Acids

124.46

Weight (kDa)

5.41

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yop-YscD_cpl	PF16697	54 - 126	1.6e-08	Inner membrane component of T3SS, cytoplasmic domain
FHA	PF00498	58 - 125	9.2e-17	FHA domain
PIN_4	PF13638	846 - 1015	7.4e-20	PIN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34355 AT1G34355 AT1G34355
fragaria_vesca	FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232
malus_domestica	MD05G1040500.v1.1 MD10G1046600.v1.1
prunus_persica	Prupe.8G054200_v2.0.a1
pyrus_communis	pycom05g03310 pycom10g03280 pycom10g03290
rosa_chinensis	RchiOBHm_Chr6g0272171
rosa_laevigata	RLG00000013694
rosa_multiflora	Rmu_sc0005748.1_g000012
rosa_roxburghii	Rroxscaffold_7G00196530
rosa_rugosa	Rorug06G0066700
rosa_samantha	Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600
rosa_wichuraiana	Rw6G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	621
AccB1I	GGYRCC	2 cut(s)	616, 1343
AccI	GTMKAC	1 cut(s)	1701
AccII	CGCG	1 cut(s)	140
AciI	CCGC	4 cut(s)	119, 493, 1175, 3152
AclWI	GGATC	7 cut(s)	314, 823, 1153, 1731, 1821, 2743, 2756
AcsI	RAATTY	9 cut(s)	481, 556, 746, 1144, 1802, 2209, 2504, 3050, 3324
AcuI	CTGAAG	3 cut(s)	2403, 3023, 3197
AfaI	GTAC	2 cut(s)	1007, 3121
AfiI	CCNNNNNNNGG	3 cut(s)	626, 1282, 2566
AflII	CTTAAG	3 cut(s)	65, 2603, 2875
AhdI	GACNNNNNGTC	1 cut(s)	455
AjiI	CACGTC	1 cut(s)	1604
AjnI	CCWGG	5 cut(s)	328, 1092, 1366, 1554, 2245
AloI	GAACNNNNNNTCC	2 cut(s)	2961, 2993
Alw21I	GWGCWC	1 cut(s)	2941
Alw26I	GTCTC	5 cut(s)	442, 1172, 2820, 3032, 3214
AlwI	GGATC	7 cut(s)	314, 823, 1153, 1731, 1821, 2743, 2756
AlwNI	CAGNNNCTG	2 cut(s)	539, 1697
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	1 cut(s)	933
ApeKI	GCWGC	5 cut(s)	2349, 2445, 2670, 2912, 3168
ApoI	RAATTY	9 cut(s)	481, 556, 746, 1144, 1802, 2209, 2504, 3050, 3324
AseI	ATTAAT	1 cut(s)	602
Asp700I	GAANNNNTTC	2 cut(s)	92, 504
AspLEI	GCGC	1 cut(s)	3202
AspS9I	GGNCC	6 cut(s)	933, 1127, 1442, 2022, 2133, 3126
AsuC2I	CCSGG	2 cut(s)	368, 713
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	5 cut(s)	1127, 1442, 2022, 2133, 3126
BamHI	GGATCC	1 cut(s)	2748
BanI	GGYRCC	2 cut(s)	616, 1343
BanII	GRGCYC	2 cut(s)	42, 1817
BarI	GAAGNNNNNNTAC	2 cut(s)	2910, 2942
BbsI	GAAGAC	5 cut(s)	451, 867, 981, 2785, 3069
Bbv12I	GWGCWC	1 cut(s)	2941
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	5 cut(s)	2361, 2457, 2682, 2924, 3155
BccI	CCATC	6 cut(s)	156, 841, 1244, 1534, 1676, 2768
BciT130I	CCWGG	5 cut(s)	330, 1094, 1368, 1556, 2247
BciVI	GTATCC	1 cut(s)	1651
BclI	TGATCA	2 cut(s)	1288, 2619
BcnI	CCSGG	2 cut(s)	368, 713
BcoDI	GTCTC	5 cut(s)	442, 1172, 2820, 3032, 3214
BfaI	CTAG	6 cut(s)	381, 788, 1884, 2156, 2223, 3065
BfmI	CTRYAG	4 cut(s)	391, 1698, 1779, 2391
BfrI	CTTAAG	3 cut(s)	65, 2603, 2875
BfuI	GTATCC	1 cut(s)	1651
BglII	AGATCT	1 cut(s)	2230
BisI	GCNGC	5 cut(s)	2350, 2446, 2671, 2913, 3169
BlsI	GCNGC	5 cut(s)	2351, 2447, 2672, 2914, 3170
Bme1390I	CCNGG	7 cut(s)	330, 368, 713, 1094, 1368, 1556, 2247
Bme18I	GGWCC	5 cut(s)	1127, 1442, 2022, 2133, 3126
BmeRI	GACNNNNNGTC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	621
BmgBI	CACGTC	1 cut(s)	1604
BmgT120I	GGNCC	6 cut(s)	933, 1127, 1442, 2022, 2133, 3126
BmiI	GGNNCC	3 cut(s)	618, 1345, 2750
BmrFI	CCNGG	7 cut(s)	330, 368, 713, 1094, 1368, 1556, 2247
BmrI	ACTGGG	2 cut(s)	44, 2316
BmsI	GCATC	4 cut(s)	480, 2328, 2352, 3314
BmuI	ACTGGG	2 cut(s)	44, 2316
BoxI	GACNNNNGTC	1 cut(s)	2131
BpiI	GAAGAC	5 cut(s)	451, 867, 981, 2785, 3069
BplI	GAGNNNNNCTC	2 cut(s)	66, 98
BpmI	CTGGAG	1 cut(s)	1965
Bpu10I	CCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	4 cut(s)	68, 2052, 3030, 3196
BpuMI	CCSGG	2 cut(s)	368, 713
BsaAI	YACGTR	1 cut(s)	1009
BsaI	GGTCTC	2 cut(s)	442, 3214
BsaJI	CCNNGG	9 cut(s)	295, 329, 1093, 1367, 1405, 1486, 2246, 3015, 3112
BsaWI	WCCGGW	1 cut(s)	613
Bsc4I	CCNNNNNNNGG	3 cut(s)	626, 1282, 2566
Bse1I	ACTGG	7 cut(s)	50, 407, 521, 1003, 2311, 2652, 2772
Bse3DI	GCAATG	2 cut(s)	2582, 2968
BseBI	CCWGG	5 cut(s)	330, 1094, 1368, 1556, 2247
BseDI	CCNNGG	9 cut(s)	295, 329, 1093, 1367, 1405, 1486, 2246, 3015, 3112
BseGI	GGATG	6 cut(s)	1148, 1255, 1463, 2065, 2186, 2367
BseLI	CCNNNNNNNGG	3 cut(s)	626, 1282, 2566
BseMI	GCAATG	2 cut(s)	2582, 2968
BseMII	CTCAG	9 cut(s)	338, 454, 762, 1743, 1814, 2009, 2120, 3072, 3250
BseNI	ACTGG	7 cut(s)	50, 407, 521, 1003, 2311, 2652, 2772
BseRI	GAGGAG	5 cut(s)	247, 639, 642, 1663, 2087
BseXI	GCAGC	5 cut(s)	2361, 2457, 2682, 2924, 3155
BseYI	CCCAGC	1 cut(s)	215
BsgI	GTGCAG	2 cut(s)	839, 1759
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	1 cut(s)	935
BshNI	GGYRCC	2 cut(s)	616, 1343
BsiHKAI	GWGCWC	1 cut(s)	2941
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	4 cut(s)	367, 614, 712, 851
BslFI	GGGAC	8 cut(s)	313, 371, 1110, 2408, 2623, 2853, 2982, 3093
BslI	CCNNNNNNNGG	3 cut(s)	626, 1282, 2566
BsmAI	GTCTC	5 cut(s)	442, 1172, 2820, 3032, 3214
BsmBI	CGTCTC	1 cut(s)	1172
BsmFI	GGGAC	8 cut(s)	313, 371, 1110, 2408, 2623, 2853, 2982, 3093
BsnI	GGCC	1 cut(s)	935
Bso31I	GGTCTC	2 cut(s)	442, 3214
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	3 cut(s)	42, 1817, 2941
Bsp19I	CCATGG	3 cut(s)	295, 1405, 3015
BspACI	CCGC	4 cut(s)	119, 493, 1175, 3152
BspANI	GGCC	1 cut(s)	935
BspCNI	CTCAG	9 cut(s)	339, 453, 763, 1742, 1815, 2010, 2121, 3073, 3249
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	3 cut(s)	618, 1345, 2750
BspMAI	CTGCAG	2 cut(s)	1783, 2395
BspPI	GGATC	7 cut(s)	314, 823, 1153, 1731, 1821, 2743, 2756
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	2 cut(s)	616, 1343
BspTI	CTTAAG	3 cut(s)	65, 2603, 2875
BspTNI	GGTCTC	2 cut(s)	442, 3214
BsrDI	GCAATG	2 cut(s)	2582, 2968
BsrI	ACTGG	7 cut(s)	50, 407, 521, 1003, 2311, 2652, 2772
BssECI	CCNNGG	9 cut(s)	295, 329, 1093, 1367, 1405, 1486, 2246, 3015, 3112
BssT1I	CCWWGG	4 cut(s)	295, 1405, 1486, 3015
Bst2UI	CCWGG	5 cut(s)	330, 1094, 1368, 1556, 2247
Bst4CI	ACNGT	6 cut(s)	25, 61, 1072, 1930, 2814, 2834
Bst6I	CTCTTC	8 cut(s)	30, 311, 672, 1332, 1864, 2016, 2127, 2715
BstAFI	CTTAAG	3 cut(s)	65, 2603, 2875
BstBAI	YACGTR	1 cut(s)	1009
BstC8I	GCNNGC	3 cut(s)	386, 2395, 2910
BstDSI	CCRYGG	4 cut(s)	295, 1405, 3015, 3112
BstENI	CCTNNNNNAGG	2 cut(s)	624, 2564
BstF5I	GGATG	6 cut(s)	1148, 1255, 1463, 2065, 2186, 2367
BstFNI	CGCG	1 cut(s)	140
BstHHI	GCGC	1 cut(s)	3202
BstMAI	GTCTC	5 cut(s)	442, 1172, 2820, 3032, 3214
BstMWI	GCNNNNNNNGC	7 cut(s)	394, 1352, 1395, 2242, 2403, 3222, 3282
BstNI	CCWGG	5 cut(s)	330, 1094, 1368, 1556, 2247
BstPAI	GACNNNNGTC	1 cut(s)	2131
BstSCI	CCNGG	7 cut(s)	328, 366, 711, 1092, 1366, 1554, 2245
BstSFI	CTRYAG	4 cut(s)	391, 1698, 1779, 2391
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	5 cut(s)	2361, 2457, 2682, 2924, 3155
BstV2I	GAAGAC	5 cut(s)	451, 867, 981, 2785, 3069
BstX2I	RGATCY	6 cut(s)	306, 828, 1723, 1826, 2230, 2748
BstYI	RGATCY	6 cut(s)	306, 828, 1723, 1826, 2230, 2748
BsuI	GTATCC	1 cut(s)	1651
BsuRI	GGCC	1 cut(s)	935
BtgI	CCRYGG	4 cut(s)	295, 1405, 3015, 3112
BtrI	CACGTC	1 cut(s)	1604
BtsCI	GGATG	6 cut(s)	1148, 1255, 1463, 2065, 2186, 2367
BtsI	GCAGTG	1 cut(s)	1776
BtsIMutI	CAGTG	5 cut(s)	30, 57, 400, 1776, 2765
Cac8I	GCNNGC	3 cut(s)	386, 2395, 2910
CaiI	CAGNNNCTG	2 cut(s)	539, 1697
CfoI	GCGC	1 cut(s)	3202
Cfr13I	GGNCC	6 cut(s)	933, 1127, 1442, 2022, 2133, 3126
CseI	GACGC	3 cut(s)	129, 208, 443
Csp6I	GTAC	2 cut(s)	1006, 3120
CviAII	CATG	8 cut(s)	296, 875, 1172, 1406, 1646, 2753, 3016, 3056
CviQI	GTAC	2 cut(s)	1006, 3120
DriI	GACNNNNNGTC	1 cut(s)	455
Eam1104I	CTCTTC	8 cut(s)	30, 311, 672, 1332, 1864, 2016, 2127, 2715
Eam1105I	GACNNNNNGTC	1 cut(s)	455
EarI	CTCTTC	8 cut(s)	30, 311, 672, 1332, 1864, 2016, 2127, 2715
EciI	GGCGGA	1 cut(s)	3167
Eco130I	CCWWGG	4 cut(s)	295, 1405, 1486, 3015
Eco24I	GRGCYC	2 cut(s)	42, 1817
Eco31I	GGTCTC	2 cut(s)	442, 3214
Eco32I	GATATC	2 cut(s)	1108, 2275
Eco47I	GGWCC	5 cut(s)	1127, 1442, 2022, 2133, 3126
Eco57I	CTGAAG	3 cut(s)	2403, 3023, 3197
Eco88I	CYCGRG	1 cut(s)	621
EcoNI	CCTNNNNNAGG	2 cut(s)	624, 2564
EcoO109I	RGGNCCY	2 cut(s)	2022, 2133
EcoRI	GAATTC	3 cut(s)	1144, 1802, 3050
EcoRII	CCWGG	5 cut(s)	328, 1092, 1366, 1554, 2245
EcoRV	GATATC	2 cut(s)	1108, 2275
EcoT14I	CCWWGG	4 cut(s)	295, 1405, 1486, 3015
EcoT38I	GRGCYC	2 cut(s)	42, 1817
ErhI	CCWWGG	4 cut(s)	295, 1405, 1486, 3015
Esp3I	CGTCTC	1 cut(s)	1172
FaeI	CATG	8 cut(s)	299, 878, 1175, 1409, 1649, 2756, 3019, 3059
FaqI	GGGAC	8 cut(s)	313, 371, 1110, 2408, 2623, 2853, 2982, 3093
FatI	CATG	8 cut(s)	295, 874, 1171, 1405, 1645, 2752, 3015, 3055
FbaI	TGATCA	2 cut(s)	1288, 2619
FblI	GTMKAC	1 cut(s)	1701
Fnu4HI	GCNGC	5 cut(s)	2350, 2446, 2671, 2913, 3169
FokI	GGATG	6 cut(s)	1135, 1262, 1450, 2072, 2173, 2374
FriOI	GRGCYC	2 cut(s)	42, 1817
Fsp4HI	GCNGC	5 cut(s)	2350, 2446, 2671, 2913, 3169
FspBI	CTAG	6 cut(s)	381, 788, 1884, 2156, 2223, 3065
GlaI	GCGC	1 cut(s)	3201
GluI	GCNGC	5 cut(s)	2350, 2446, 2671, 2913, 3169
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	1965
HaeIII	GGCC	1 cut(s)	935
HapII	CCGG	4 cut(s)	367, 614, 712, 851
HgaI	GACGC	3 cut(s)	129, 208, 443
HhaI	GCGC	1 cut(s)	3202
Hin1II	CATG	8 cut(s)	299, 878, 1175, 1409, 1649, 2756, 3019, 3059
Hin6I	GCGC	1 cut(s)	3200
HinP1I	GCGC	1 cut(s)	3200
HincII	GTYRAC	4 cut(s)	103, 652, 1552, 3294
HindII	GTYRAC	4 cut(s)	103, 652, 1552, 3294
HindIII	AAGCTT	5 cut(s)	266, 925, 1059, 1972, 2415
HpaI	GTTAAC	1 cut(s)	1552
HpaII	CCGG	4 cut(s)	367, 614, 712, 851
Hpy99I	CGWCG	2 cut(s)	11, 179
HpyCH4III	ACNGT	6 cut(s)	25, 61, 1072, 1930, 2814, 2834
HpyCH4IV	ACGT	3 cut(s)	1008, 1603, 3141
HpyF10VI	GCNNNNNNNGC	7 cut(s)	394, 1352, 1395, 2242, 2403, 3222, 3282
HpySE526I	ACGT	3 cut(s)	1008, 1603, 3141
Hsp92II	CATG	8 cut(s)	299, 878, 1175, 1409, 1649, 2756, 3019, 3059
HspAI	GCGC	1 cut(s)	3200
Ksp22I	TGATCA	2 cut(s)	1288, 2619
KspAI	GTTAAC	1 cut(s)	1552
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	5 cut(s)	74, 369, 2074, 2794, 3230
Lsp1109I	GCAGC	5 cut(s)	2361, 2457, 2682, 2924, 3155
LweI	GCATC	4 cut(s)	480, 2328, 2352, 3314
MaeI	CTAG	6 cut(s)	381, 788, 1884, 2156, 2223, 3065
MaeII	ACGT	3 cut(s)	1008, 1603, 3141
MaeIII	GTNAC	5 cut(s)	1024, 1450, 1629, 1687, 2990
MfeI	CAATTG	3 cut(s)	453, 732, 1292
MflI	RGATCY	6 cut(s)	306, 828, 1723, 1826, 2230, 2748
MhlI	GDGCHC	3 cut(s)	42, 1817, 2941
MlyI	GAGTC	7 cut(s)	202, 581, 971, 1697, 1753, 2605, 3070
MmeI	TCCRAC	3 cut(s)	157, 2491, 2816
MroXI	GAANNNNTTC	2 cut(s)	92, 504
MslI	CAYNNNNRTG	2 cut(s)	423, 879
MspA1I	CMGCKG	2 cut(s)	1124, 1439
MspCI	CTTAAG	3 cut(s)	65, 2603, 2875
MspI	CCGG	4 cut(s)	367, 614, 712, 851
MspR9I	CCNGG	7 cut(s)	330, 368, 713, 1094, 1368, 1556, 2247
MunI	CAATTG	3 cut(s)	453, 732, 1292
MvaI	CCWGG	5 cut(s)	330, 1094, 1368, 1556, 2247
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	7 cut(s)	394, 1352, 1395, 2242, 2403, 3222, 3282
NciI	CCSGG	2 cut(s)	368, 713
NcoI	CCATGG	3 cut(s)	295, 1405, 3015
NlaIII	CATG	8 cut(s)	299, 878, 1175, 1409, 1649, 2756, 3019, 3059
NlaIV	GGNNCC	3 cut(s)	618, 1345, 2750
NmuCI	GTSAC	5 cut(s)	1024, 1450, 1629, 1687, 2990
PaeR7I	CTCGAG	1 cut(s)	621
PciSI	GCTCTTC	1 cut(s)	30
PdmI	GAANNNNTTC	2 cut(s)	92, 504
PkrI	GCNGC	5 cut(s)	2351, 2447, 2672, 2914, 3170
PleI	GAGTC	7 cut(s)	202, 580, 971, 1697, 1753, 2605, 3069
PpsI	GAGTC	7 cut(s)	202, 580, 971, 1697, 1753, 2605, 3069
Ppu21I	YACGTR	1 cut(s)	1009
PpuMI	RGGWCCY	2 cut(s)	2022, 2133
PshAI	GACNNNNGTC	1 cut(s)	2131
PshBI	ATTAAT	1 cut(s)	602
Psp5II	RGGWCCY	2 cut(s)	2022, 2133
Psp6I	CCWGG	5 cut(s)	328, 1092, 1366, 1554, 2245
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	5 cut(s)	328, 1092, 1366, 1554, 2245
PspN4I	GGNNCC	3 cut(s)	618, 1345, 2750
PspPI	GGNCC	6 cut(s)	933, 1127, 1442, 2022, 2133, 3126
PspPPI	RGGWCCY	2 cut(s)	2022, 2133
PspXI	VCTCGAGB	1 cut(s)	621
PstI	CTGCAG	2 cut(s)	1783, 2395
PstNI	CAGNNNCTG	2 cut(s)	539, 1697
PsuI	RGATCY	6 cut(s)	306, 828, 1723, 1826, 2230, 2748
PvuII	CAGCTG	2 cut(s)	1124, 1439
RsaI	GTAC	2 cut(s)	1007, 3121
RsaNI	GTAC	2 cut(s)	1006, 3120
RseI	CAYNNNNRTG	2 cut(s)	423, 879
SapI	GCTCTTC	1 cut(s)	30
SatI	GCNGC	5 cut(s)	2350, 2446, 2671, 2913, 3169
Sau96I	GGNCC	6 cut(s)	933, 1127, 1442, 2022, 2133, 3126
SchI	GAGTC	7 cut(s)	202, 581, 971, 1697, 1753, 2605, 3070
ScrFI	CCNGG	7 cut(s)	330, 368, 713, 1094, 1368, 1556, 2247
SduI	GDGCHC	3 cut(s)	42, 1817, 2941
SfaNI	GCATC	4 cut(s)	480, 2328, 2352, 3314
SfcI	CTRYAG	4 cut(s)	391, 1698, 1779, 2391
Sfr274I	CTCGAG	1 cut(s)	621
SinI	GGWCC	5 cut(s)	1127, 1442, 2022, 2133, 3126
SlaI	CTCGAG	1 cut(s)	621
SmiMI	CAYNNNNRTG	2 cut(s)	423, 879
SmlI	CTYRAG	8 cut(s)	65, 83, 621, 2067, 2603, 2875, 3045, 3211
SmoI	CTYRAG	8 cut(s)	65, 83, 621, 2067, 2603, 2875, 3045, 3211
SsiI	CCGC	4 cut(s)	119, 493, 1175, 3152
SspI	AATATT	2 cut(s)	724, 1322
SspMI	CTAG	6 cut(s)	381, 788, 1884, 2156, 2223, 3065
StyD4I	CCNGG	7 cut(s)	328, 366, 711, 1092, 1366, 1554, 2245
StyI	CCWWGG	4 cut(s)	295, 1405, 1486, 3015
TaaI	ACNGT	6 cut(s)	25, 61, 1072, 1930, 2814, 2834
TaiI	ACGT	3 cut(s)	1011, 1606, 3144
TaqI	TCGA	6 cut(s)	337, 622, 1968, 2125, 2195, 2467
TaqII	GACCGA	1 cut(s)	879
TscAI	CASTG	5 cut(s)	30, 57, 407, 1783, 2772
TseFI	GTSAC	5 cut(s)	1024, 1450, 1629, 1687, 2990
TseI	GCWGC	5 cut(s)	2349, 2445, 2670, 2912, 3168
Tsp45I	GTSAC	5 cut(s)	1024, 1450, 1629, 1687, 2990
TspGWI	ACGGA	3 cut(s)	87, 133, 1469
TspRI	CASTG	5 cut(s)	30, 57, 407, 1783, 2772
Vha464I	CTTAAG	3 cut(s)	65, 2603, 2875
VpaK11BI	GGWCC	5 cut(s)	1127, 1442, 2022, 2133, 3126
VspI	ATTAAT	1 cut(s)	602
XagI	CCTNNNNNAGG	2 cut(s)	624, 2564
XapI	RAATTY	9 cut(s)	481, 556, 746, 1144, 1802, 2209, 2504, 3050, 3324
XhoI	CTCGAG	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	1701
XmnI	GAANNNNTTC	2 cut(s)	92, 504
XspI	CTAG	6 cut(s)	381, 788, 1884, 2156, 2223, 3065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.