Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004743

Physical Location & Seq

Genomic Coordinates Forward (+)

33760670 .. 33761286

Gene Structure 617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG183600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGTAAAAACAAATTGGTGGATCCATGTCCAGAGTTCACTGGAAGATGGAAGACTGATCGCTCCAACCCCTCCTGCTTCTCCACAGTCTCTATTTAGTGAGGACAGTTGGGGACTTACTTCTGGAACAACAAGCTCGTTTCCCTTCTTAAGATGTAGGAGTTCTATGGAACTTGTATCGCCAGCAGCAGAAGATCATATATTTGATTGTGCTCTTTTACATAGGAAGATGAGCAATGAGGGACAACTTGTTCTTCTAAGTAGCGACATCACCCTGAAGATCAAAGCCATGGCAGAGGGTTTGATTTGTGAGACAGCTCAAGAATTCCATGAGAGTCTAGTGAACCCGTATTCTGAGAGGTTTATGTGGGCTGGTAGCTGTCCCCGTGGGCGTACTTGGTCCTACTTAGCTGACATAGTTTTGGCGGAGAAGTATAATCGCTGCCAACTGAAGAAGTCATCAAGGGGGGAAGGCGCAAAAGGTCTCAAGCTCATTTTGCTCCACAATTCTCAGTATGGACAGATCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004540 GO:0004857 GO:0004864 GO:0004865 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008995 GO:0009056 GO:0009057 GO:0009555 GO:0009892 GO:0009987 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0016070 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019439 GO:0019888 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032515 GO:0034641 GO:0034655 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043666 GO:0044092 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045936 GO:0046483 GO:0046700 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901363 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FHA PIN_4

Protein Analysis

176

Amino Acids

19.72

Weight (kDa)

7.0

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIN_4	PF13638	61 - 106	1.9e-07	PIN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34355 AT1G34355 AT1G34355
fragaria_vesca	FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232 FvH4_2g12232
malus_domestica	MD05G1040500.v1.1 MD10G1046600.v1.1
prunus_persica	Prupe.8G054200_v2.0.a1
pyrus_communis	pycom05g03310 pycom10g03280 pycom10g03290
rosa_chinensis	RchiOBHm_Chr6g0272171
rosa_laevigata	RLG00000013694
rosa_multiflora	Rmu_sc0005748.1_g000012
rosa_roxburghii	Rroxscaffold_7G00196530
rosa_rugosa	Rorug06G0066700
rosa_samantha	Rh6AG183500 Rh6BG183500 Rh6BG183600 Rh6CG184900 Rh6DG176600
rosa_wichuraiana	Rw6G015820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	425
AclWI	GGATC	3 cut(s)	16, 29, 517
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	296, 470
AfaI	GTAC	1 cut(s)	394
AflII	CTTAAG	1 cut(s)	148
AloI	GAACNNNNNNTCC	2 cut(s)	234, 266
AluBI	AGCT	5 cut(s)	135, 317, 378, 410, 490
AluI	AGCT	5 cut(s)	135, 317, 378, 410, 490
Alw21I	GWGCWC	1 cut(s)	214
Alw26I	GTCTC	3 cut(s)	93, 305, 488
AlwI	GGATC	3 cut(s)	16, 29, 517
ApeKI	GCWGC	2 cut(s)	185, 441
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	476
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	399
BamHI	GGATCC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	2 cut(s)	197, 428
BccI	CCATC	1 cut(s)	41
BcoDI	GTCTC	3 cut(s)	93, 305, 488
BfaI	CTAG	1 cut(s)	338
BfrI	CTTAAG	1 cut(s)	148
BisI	GCNGC	2 cut(s)	186, 442
BlsI	GCNGC	2 cut(s)	187, 443
Bme18I	GGWCC	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	58
BpuEI	CTTGAG	2 cut(s)	303, 470
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	2 cut(s)	288, 385
Bse1I	ACTGG	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	241
BseDI	CCNNGG	2 cut(s)	288, 385
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	345, 524
BseNI	ACTGG	1 cut(s)	45
BseXI	GCAGC	2 cut(s)	197, 428
BsiHKAI	GWGCWC	1 cut(s)	214
BslFI	GGGAC	3 cut(s)	126, 255, 366
BsmAI	GTCTC	3 cut(s)	93, 305, 488
BsmFI	GGGAC	3 cut(s)	126, 255, 366
Bso31I	GGTCTC	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	214
Bsp143I	GATC	5 cut(s)	21, 57, 193, 279, 522
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	1 cut(s)	425
BspCNI	CTCAG	2 cut(s)	346, 523
BspLI	GGNNCC	1 cut(s)	23
BspPI	GGATC	3 cut(s)	16, 29, 517
BspTI	CTTAAG	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	488
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	288, 385
BssMI	GATC	5 cut(s)	21, 57, 193, 279, 522
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	87, 107
BstAFI	CTTAAG	1 cut(s)	148
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	4 cut(s)	257, 354, 406, 510
BstDSI	CCRYGG	2 cut(s)	288, 385
BstHHI	GCGC	1 cut(s)	476
BstKTI	GATC	5 cut(s)	24, 60, 196, 282, 525
BstMAI	GTCTC	3 cut(s)	93, 305, 488
BstMBI	GATC	5 cut(s)	21, 57, 193, 279, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstV1I	GCAGC	2 cut(s)	197, 428
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	2 cut(s)	21, 522
BstYI	RGATCY	2 cut(s)	21, 522
BtgI	CCRYGG	2 cut(s)	288, 385
BtsIMutI	CAGTG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	183
CfoI	GCGC	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	3 cut(s)	26, 289, 329
CviJI	RGCY	7 cut(s)	135, 287, 317, 371, 378, 410, 490
CviKI_1	RGCY	7 cut(s)	135, 287, 317, 371, 378, 410, 490
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	4 cut(s)	257, 354, 406, 510
DpnI	GATC	5 cut(s)	23, 59, 195, 281, 524
DpnII	GATC	5 cut(s)	21, 57, 193, 279, 522
EciI	GGCGGA	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	399
Eco57I	CTGAAG	2 cut(s)	296, 470
EcoRI	GAATTC	1 cut(s)	323
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaeI	CATG	3 cut(s)	29, 292, 332
FaqI	GGGAC	3 cut(s)	126, 255, 366
FatI	CATG	3 cut(s)	25, 288, 328
Fnu4HI	GCNGC	2 cut(s)	186, 442
Fsp4HI	GCNGC	2 cut(s)	186, 442
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	475
GluI	GCNGC	2 cut(s)	186, 442
HhaI	GCGC	1 cut(s)	476
Hin1II	CATG	3 cut(s)	29, 292, 332
Hin6I	GCGC	1 cut(s)	474
HinP1I	GCGC	1 cut(s)	474
HinfI	GANTC	1 cut(s)	334
HphI	GGTGA	1 cut(s)	262
Hpy166II	GTNNAC	2 cut(s)	38, 343
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	3 cut(s)	31, 123, 320
Hpy8I	GTNNAC	2 cut(s)	38, 343
HpyAV	CCTTC	2 cut(s)	154, 464
HpyCH4III	ACNGT	2 cut(s)	87, 107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	4 cut(s)	257, 354, 406, 510
Hsp92II	CATG	3 cut(s)	29, 292, 332
HspAI	GCGC	1 cut(s)	474
Kzo9I	GATC	5 cut(s)	21, 57, 193, 279, 522
LmnI	GCTCC	2 cut(s)	67, 504
LpnPI	CCDG	7 cut(s)	26, 44, 87, 108, 195, 287, 357
Lsp1109I	GCAGC	2 cut(s)	197, 428
MaeI	CTAG	1 cut(s)	338
MalI	GATC	5 cut(s)	23, 59, 195, 281, 524
MboI	GATC	5 cut(s)	21, 57, 193, 279, 522
MboII	GAAGA	7 cut(s)	56, 63, 203, 238, 245, 289, 463
MflI	RGATCY	2 cut(s)	21, 522
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	3 cut(s)	13, 323, 505
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	81, 94, 232, 289, 351
MseI	TTAA	1 cut(s)	149
MspCI	CTTAAG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	496
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	5 cut(s)	21, 57, 193, 279, 522
NlaIII	CATG	3 cut(s)	29, 292, 332
NlaIV	GGNNCC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	187, 443
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	399
PsuI	RGATCY	2 cut(s)	21, 522
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	2 cut(s)	186, 442
Sau3AI	GATC	5 cut(s)	21, 57, 193, 279, 522
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	343
SduI	GDGCHC	1 cut(s)	214
SetI	ASST	7 cut(s)	137, 319, 362, 380, 412, 484, 492
SinI	GGWCC	1 cut(s)	399
SmlI	CTYRAG	3 cut(s)	148, 318, 485
SmoI	CTYRAG	3 cut(s)	148, 318, 485
Sse9I	AATT	3 cut(s)	13, 323, 505
SsiI	CCGC	1 cut(s)	425
SspMI	CTAG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	87, 107
TasI	AATT	3 cut(s)	13, 323, 505
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	1 cut(s)	45
TseI	GCWGC	2 cut(s)	185, 441
TspRI	CASTG	1 cut(s)	45
Vha464I	CTTAAG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	399
XapI	RAATTY	1 cut(s)	323
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.